OBART06G07710 (Oryza barthii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 OBART06G07710 T275539_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB93
M07020_2.00 		Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD		 Dap-seq
OMalley et al.(2016)
MYB93_col_a 		0.809 0.860
AtMYB93
M07021_2.00 		Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN		 Dap-seq
OMalley et al.(2016)
MYB93_colamp_a 		0.809 0.860
MYB92
M07123_2.00 		Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN		 Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b 		0.808 0.839
MYB92
M07124_2.00 		Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN		 Dap-seq
OMalley et al.(2016)
MYB92_colamp_a 		0.808 0.839
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.789 0.806
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.789 0.806
MYB106
M11040_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G01140_01 		0.760 0.785
AtMYB17
M07099_2.00 		Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB17_colamp_a 		0.741 0.742
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.708 0.806
ATY53
M07078_2.00 		Arabidopsis thaliana
YBYACCWAMCDHHNNNNNNNN
NNNNNNNNDDHGKTWGGTRVR		 Dap-seq
OMalley et al.(2016)
MYB67_col_a 		0.689 0.699
AtMYB74
M07104_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB74_colamp_a 		0.678 0.774
AtMYB74
M07105_2.00 		Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV		 Dap-seq
OMalley et al.(2016)
MYB74_col 		0.678 0.774
AtMYB10
M07081_2.00 		Arabidopsis thaliana
YYYACCWAMCHHHHNH
DNDDDDGKTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB10_col_a 		0.677 0.699
AtMYB10
M07082_2.00 		Arabidopsis thaliana
NYYYACCWAMCHHH
DDDGKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB10_colamp_a 		0.677 0.699
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.677 0.699
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.677 0.699
MYB49
M07140_2.00 		Arabidopsis thaliana
HDBBYYACCWAMYWH
DWRKTWGGTRRVVHD		 Dap-seq
OMalley et al.(2016)
MYB49_col_a 		0.666 0.785
MYB49
M07141_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHN
NDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB49_colamp_a 		0.666 0.785
MYB39
M07106_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_col_a 		0.661 0.731
MYB39
M07107_2.00 		Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_colamp_a 		0.661 0.731
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART06G07710.1 Myb 14 61
OBART06G07710.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Oryza barthii TFs

900 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30045.m000471 Ricinus communis 30045.m000471 I
AMTR_s00022p00165560 Amborella trichopoda AMTR_s00022p00165560 I
ZFP5 Arabidopsis thaliana AT1G10480 D
GIS2 Arabidopsis thaliana AT5G06650 I
BGIOSGA029710 Oryza indica BGIOSGA029710 I
Bo2g007320 Brassica oleracea Bo2g007320 I
Bo2g155500 Brassica oleracea Bo2g155500 N
Bo8g109510 Brassica oleracea Bo8g109510 I
Bo9g011450 Brassica oleracea Bo9g011450 I
Bo9g166240 Brassica oleracea Bo9g166240 I
Bostr.13129s0308 Boechera stricta Bostr.13129s0308 I
Bostr.13671s0437 Boechera stricta Bostr.13671s0437 I
Bostr.2902s0137 Boechera stricta Bostr.2902s0137 I
Bostr.29827s0107 Boechera stricta Bostr.29827s0107 N
Bra008787 Brassica rapa Bra008787 I
Bra028724 Brassica rapa Bra028724 I
BRADI4G30920 Brachypodium distachyon BRADI4G30920 I
BRADI4G37760 Brachypodium distachyon BRADI4G37760 I
Cagra.1504s0017 Capsella grandiflora Cagra.1504s0017 I
Cagra.3166s0007 Capsella grandiflora Cagra.3166s0007 I
Carubv10002570m.g Capsella rubella Carubv10002570m.g I
Carubv10003685m.g Capsella rubella Carubv10003685m.g I
Carubv10003820m.g Capsella rubella Carubv10003820m.g I
Carubv10018785m.g Capsella rubella Carubv10018785m.g I
cassava44297.m1 Manihot esculenta cassava44297.m1 I
cassava45710.m1 Manihot esculenta cassava45710.m1 I
Ca_08116 Cicer arietinum Ca_08116 I
Ca_23376 Cicer arietinum Ca_23376 N
chr5.LjT04G07.90.nd Lotus japonicus chr5.LjT04G07.90.nd I
Ciclev10003844m.g Citrus clementina Ciclev10003844m.g I
evm.TU.supercontig_116.88 Carica papaya evm.TU.supercontig_116.88 I
evm.TU.supercontig_1307.1 Carica papaya evm.TU.supercontig_1307.1 I
evm.TU.supercontig_51.84 Carica papaya evm.TU.supercontig_51.84 I
F775_01070 Aegilops tauschii F775_01070 I
F775_05447 Aegilops tauschii F775_05447 N
F775_42450 Aegilops tauschii F775_42450 I
fgenesh2_kg.6__2677__AT5G27880.1 Arabidopsis lyrata fgenesh2_kg.6__2677__AT5G27880.1 N
GIS2 Arabidopsis lyrata fgenesh2_kg.6__609__AT5G06650.1 I
gene05169-v1.0-hybrid Fragaria vesca gene05169-v1.0-hybrid I
gene05263-v1.0-hybrid Fragaria vesca gene05263-v1.0-hybrid I
GLYMA03G37610 Glycine max GLYMA03G37610 I
GLYMA06G14783 Glycine max GLYMA06G14783 I
GLYMA19G40220 Glycine max GLYMA19G40220 I
GRMZM2G037574 Zea mays GRMZM2G037574 I
GRMZM2G108818 Zea mays GRMZM2G108818 I
GRMZM2G115388 Zea mays GRMZM2G115388 I
GRMZM2G161255 Zea mays GRMZM2G161255 I
GRMZM2G403590 Zea mays GRMZM2G403590 I
GRMZM2G703281 Zea mays GRMZM2G703281 I
LPERR08G07840 Leersia perrieri LPERR08G07840 I
LPERR09G07930 Leersia perrieri LPERR09G07930 I
Lus10017229.g Linum usitatissimum Lus10017229.g I
MDP0000121370 Malus domestica MDP0000121370 I
MDP0000165710 Malus domestica MDP0000165710 I
MLOC_38864 Hordeum vulgare MLOC_38864 N
MLOC_4507 Hordeum vulgare MLOC_4507 I
MTR_2g067740 Medicago truncatula MTR_2g067740 N
OB09G17800 Oryza brachyantha OB09G17800 I
OBART09G11250 Oryza barthii OBART09G11250 I
OGLUM09G11630 Oryza glumaepatula OGLUM09G11630 I
OLONG_006424 Oryza longistaminata OLONG_006424 I
OMERI09G08780 Oryza meridionalis OMERI09G08780 I
ONIVA09G10990 Oryza nivara ONIVA09G10990 I
orange1.1g046965m.g Citrus sinensis orange1.1g046965m.g I
ORGLA09G0084000 Oryza glaberrima ORGLA09G0084000 I
ORUFI09G12050 Oryza rufipogon ORUFI09G12050 I
OS09G0431900 Oryza sativa OS09G0431900 I
Pavir.Bb02239 Panicum virgatum Pavir.Bb02239 I
Pavir.Ha01090 Panicum virgatum Pavir.Ha01090 I
Pavir.Ia03096 Panicum virgatum Pavir.Ia03096 I
Pavir.Ia03263 Panicum virgatum Pavir.Ia03263 I
Pavir.Ib01788 Panicum virgatum Pavir.Ib01788 I
Pavir.Ib01803 Panicum virgatum Pavir.Ib01803 I
Pavir.Ib01877 Panicum virgatum Pavir.Ib01877 I
Pavir.J36164 Panicum virgatum Pavir.J36164 I
PGSC0003DMG400011450 Solanum tuberosum PGSC0003DMG400011450 I
PK10012.1 Cannabis sativa PK10012.1 I
Pm008291 Prunus mume Pm008291 I
Sb01g034110 Sorghum bicolor Sb01g034110 I
Sb02g025390 Sorghum bicolor Sb02g025390 I
SELMODRAFT_405785 Selaginella moellendorffii SELMODRAFT_405785 I
SELMODRAFT_450813 Selaginella moellendorffii SELMODRAFT_450813 I
SELMODRAFT_450832 Selaginella moellendorffii SELMODRAFT_450832 I
SELMODRAFT_450839 Selaginella moellendorffii SELMODRAFT_450839 I
Si028367m.g Setaria italica Si028367m.g I
Si031489m.g Setaria italica Si031489m.g I
Si037914m.g Setaria italica Si037914m.g I
Solyc10g078970.1 Solanum lycopersicum Solyc10g078970.1 I
Solyc10g078990.1 Solanum lycopersicum Solyc10g078990.1 I
TCM_044725 Theobroma cacao TCM_044725 I
Thhalv10008773m.g Eutrema salsugineum Thhalv10008773m.g I
Thhalv10015891m.g Eutrema salsugineum Thhalv10015891m.g I
Traes_5AL_81EFE5211 Triticum aestivum Traes_5AL_81EFE5211 I
Traes_5BL_3E6B0CD61 Triticum aestivum Traes_5BL_3E6B0CD61 I
Traes_5DL_B97546DA11 Triticum aestivum Traes_5DL_B97546DA11 I
Traes_5DL_DD8A0F6BE Triticum aestivum Traes_5DL_DD8A0F6BE I
TRIUR3_22340 Triticum urartu TRIUR3_22340 I
TRIUR3_30765 Triticum urartu TRIUR3_30765 N
TRIUR3_34498 Triticum urartu TRIUR3_34498 I
VIT_08s0040g00750 Vitis vinifera VIT_08s0040g00750 I