CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OGLUM05G06460
(
Oryza glumaepatula
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
OGLUM05G06460
T275730_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
KUA1
M02312_2.00
Arabidopsis thaliana
NNTTATCCDN
NHGGATAANN
PBM
Weirauch et al.(2014)
pTH7647
0.881
0.894
KUA1
M07136_2.00
Arabidopsis thaliana
WWHHTTATCCAHWW
WWDTGGATAADDWW
Dap-seq
OMalley et al.(2016)
At5g47390_colamp_a
0.881
0.894
KUA1
M07137_2.00
Arabidopsis thaliana
HHWDYHTTATCCAHW
WDTGGATAADRHWDD
Dap-seq
OMalley et al.(2016)
At5g47390_col_b
0.881
0.894
PK00738.1
M02346_2.00
Cannabis sativa
NYWATCYDNN
NNHRGATWRN
PBM
Weirauch et al.(2014)
pTH9487
0.860
0.872
fgenesh1_pg.scaffold_70000111
M02342_2.00
Physcomitrella patens
NNHNATCBN
NVGATNDNN
PBM
Weirauch et al.(2014)
pTH8492
0.842
0.915
PK17526.1
M02353_2.00
Cannabis sativa
NNTTATCCAN
NTGGATAANN
PBM
Weirauch et al.(2014)
pTH9588
0.824
0.851
AT5G61620
M07149_2.00
Arabidopsis thaliana
WWHHTTATCCAHWWN
NWWDTGGATAADDWW
Dap-seq
OMalley et al.(2016)
AT5G61620_col_a
0.824
0.851
AT5G61620
M07150_2.00
Arabidopsis thaliana
YHTTATCCAHW
WDTGGATAADR
Dap-seq
OMalley et al.(2016)
AT5G61620_colamp_a
0.824
0.851
AT3G16350
M01078_2.00
Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN
PBM
Sullivan et al.(2014)
pTH7149
0.821
0.872
PK23829.1
M02355_2.00
Cannabis sativa
VTTATCCD
HGGATAAB
PBM
Weirauch et al.(2014)
pTH9592
0.813
0.851
PK29550.1
M02358_2.00
Cannabis sativa
NNHDATCYNN
NNRGATHDNN
PBM
Weirauch et al.(2014)
pTH9595
0.811
0.851
0600010132
M02360_2.00
Ostreococcus tauri
NNVTTATCCDNNN
NNNHGGATAABNN
PBM
Weirauch et al.(2014)
pTH9441
0.811
0.894
AT1G19000
M02287_2.00
Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN
PBM
Weirauch et al.(2014)
pTH7120
0.799
0.809
AT1G19000
M07012_2.00
Arabidopsis thaliana
HDYHTTATCCAHWW
WWDTGGATAADRHD
Dap-seq
OMalley et al.(2016)
At1g19000_col_a
0.799
0.809
AT1G19000
M07013_2.00
Arabidopsis thaliana
WDYNTTATCCAHWW
WWDTGGATAANRHW
Dap-seq
OMalley et al.(2016)
At1g19000_colamp_a
0.799
0.809
AT5G56840
M07144_2.00
Arabidopsis thaliana
WWYMTTATCCAWWWN
NWWWTGGATAAKRWW
Dap-seq
OMalley et al.(2016)
AT5G56840_col_a
0.781
0.851
AT5G56840
M07145_2.00
Arabidopsis thaliana
HHHWWYHTTATCCWHW
WDWGGATAADRWWDDD
Dap-seq
OMalley et al.(2016)
AT5G56840_colamp_a
0.781
0.851
AT3G10580
M07072_2.00
Arabidopsis thaliana
AWBCTTATCYWHWHH
DDWDWRGATAAGVWT
Dap-seq
OMalley et al.(2016)
AT3G10580_col_a
0.709
0.681
AT3G10580
M07073_2.00
Arabidopsis thaliana
CCGAWAAWNTCGGDD
HHCCGANWTTWTCGG
Dap-seq
OMalley et al.(2016)
AT3G10580_colamp_a
0.709
0.681
AT1G74840
M02291_2.00
Arabidopsis thaliana
NGWTATCCRNN
NNYGGATAWCN
PBM
Weirauch et al.(2014)
pTH7074
0.704
0.809
AT1G74840
M07037_2.00
Arabidopsis thaliana
HHTTATCCAHW
WDTGGATAADD
Dap-seq
OMalley et al.(2016)
At1g74840_col100_a
0.704
0.809
AT1G74840
M07038_2.00
Arabidopsis thaliana
HWNHTTATCCAHWW
WWDTGGATAADNWD
Dap-seq
OMalley et al.(2016)
At1g74840_colamp_a
0.704
0.809
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OGLUM05G06460.1
Myb
122
169
GVPWTEEEHRMFLAGLDKLGKGDWRGISRHFVTTRTPTQVASHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Oryza glumaepatula
TFs
596 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy