POPTR_0002s13030 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0002s13030 T278217_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.722 0.774
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.682 0.763
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.678 0.763
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.678 0.753
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.678 0.753
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.676 0.753
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.676 0.753
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.676 0.753
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.668 0.763
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.668 0.763
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.668 0.763
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.668 0.763
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.668 0.763
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s13030.1 Myb 37 83
POPTR_0002s13030.1 Myb 89 134

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

253 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.123440 Cucumis sativus Cucsa.123440 I 0.858
evm.TU.supercontig_376.4 Carica papaya evm.TU.supercontig_376.4 I 0.851
30170.m013927 Ricinus communis 30170.m013927 I 0.842
cassava16103.m1 Manihot esculenta cassava16103.m1 I 0.842
Ciclev10002239m.g Citrus clementina Ciclev10002239m.g I 0.842
orange1.1g025351m.g Citrus sinensis orange1.1g025351m.g I 0.842
Cla021015 Citrullus lanatus Cla021015 I 0.834
gene09039-v1.0-hybrid Fragaria vesca gene09039-v1.0-hybrid I 0.834
Gorai.009G208900 Gossypium raimondii Gorai.009G208900 I 0.825
SapurV1A.0017s0390 Salix purpurea SapurV1A.0017s0390 I 0.822
POPTR_0014s03440 Populus trichocarpa POPTR_0014s03440 I 0.821
cassava46434.m1 Manihot esculenta cassava46434.m1 I 0.820
PRUPE_ppa010735mg Prunus persica PRUPE_ppa010735mg I 0.809
Pm005220 Prunus mume Pm005220 I 0.809
MDP0000894463 Malus domestica MDP0000894463 I 0.809
Cla022889 Citrullus lanatus Cla022889 I 0.806
Cucsa.232630 Cucumis sativus Cucsa.232630 I 0.806
TCM_033907 Theobroma cacao TCM_033907 I 0.802
GLYMA04G03910 Glycine max GLYMA04G03910 I 0.801
PGSC0003DMG400007994 Solanum tuberosum PGSC0003DMG400007994 I 0.797
Solyc04g079360.1 Solanum lycopersicum Solyc04g079360.1 I 0.797
Eucgr.F00031 Eucalyptus grandis Eucgr.F00031 I 0.796
GLYMA06G04010 Glycine max GLYMA06G04010 I 0.792
Ca_01522 Cicer arietinum Ca_01522 I 0.788
Lus10021762.g Linum usitatissimum Lus10021762.g I 0.784
MDP0000477900 Malus domestica MDP0000477900 I 0.783
MDP0000480596 Malus domestica MDP0000480596 I 0.783
MDP0000641708 Malus domestica MDP0000641708 I 0.783
MDP0000784297 Malus domestica MDP0000784297 I 0.783
MDP0000823270 Malus domestica MDP0000823270 I 0.783
Lus10032764.g Linum usitatissimum Lus10032764.g I 0.780
PK29071.1 Cannabis sativa PK29071.1 I 0.776
mgf006151m Mimulus guttatus mgf006151m I 0.770
GSMUA_Achr1G26140_001 Musa acuminata GSMUA_Achr1G26140_001 I 0.768
mgf003084m Mimulus guttatus mgf003084m I 0.768
Eucgr.F02372 Eucalyptus grandis Eucgr.F02372 I 0.766
mgf023922m Mimulus guttatus mgf023922m I 0.763
Gorai.009G275100 Gossypium raimondii Gorai.009G275100 I 0.763
GSMUA_Achr3G13070_001 Musa acuminata GSMUA_Achr3G13070_001 I 0.760
GSMUA_Achr4G20150_001 Musa acuminata GSMUA_Achr4G20150_001 I 0.760
GLYMA17G36370 Glycine max GLYMA17G36370 I 0.758
Eucgr.F00002 Eucalyptus grandis Eucgr.F00002 I 0.755
SapurV1A.0525s0230 Salix purpurea SapurV1A.0525s0230 I 0.752
GLYMA17G35620 Glycine max GLYMA17G35620 I 0.750
GSMUA_Achr9G22600_001 Musa acuminata GSMUA_Achr9G22600_001 I 0.747
TCM_007138 Theobroma cacao TCM_007138 I 0.745
chr5.CM0096.100.nc Lotus japonicus chr5.CM0096.100.nc I 0.741
VIT_18s0001g11170 Vitis vinifera VIT_18s0001g11170 I 0.740
GRMZM2G145444 Zea mays GRMZM2G145444 I 0.739
GSMUA_Achr4G12950_001 Musa acuminata GSMUA_Achr4G12950_001 I 0.739
LPERR02G05810 Leersia perrieri LPERR02G05810 I 0.739
Sb04g005940 Sorghum bicolor Sb04g005940 I 0.739
Si017917m.g Setaria italica Si017917m.g I 0.739
Pavir.Ab00649 Panicum virgatum Pavir.Ab00649 I 0.739
Pavir.J23512 Panicum virgatum Pavir.J23512 I 0.739
GLYMA05G21220 Glycine max GLYMA05G21220 I 0.738
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I 0.733
GSMUA_AchrUn_randomG01280_001 Musa acuminata GSMUA_AchrUn_randomG01280_001 I 0.733
Gorai.010G016800 Gossypium raimondii Gorai.010G016800 I 0.731
GSMUA_Achr1G09750_001 Musa acuminata GSMUA_Achr1G09750_001 I 0.728
GSMUA_Achr3G28230_001 Musa acuminata GSMUA_Achr3G28230_001 I 0.727
MTR_3g101290 Medicago truncatula MTR_3g101290 I 0.726
POPTR_0005s18620 Populus trichocarpa POPTR_0005s18620 I 0.725
CM0528.210.nd Lotus japonicus CM0528.210.nd I 0.725
GRMZM2G087955 Zea mays GRMZM2G087955 I 0.723
Ciclev10001979m.g Citrus clementina Ciclev10001979m.g I 0.723
orange1.1g022144m.g Citrus sinensis orange1.1g022144m.g I 0.723
MLOC_7426 Hordeum vulgare MLOC_7426 I 0.722
OGLUM02G06640 Oryza glumaepatula OGLUM02G06640 I 0.722
OMERI02G07700 Oryza meridionalis OMERI02G07700 I 0.722
ONIVA02G08210 Oryza nivara ONIVA02G08210 I 0.722
OPUNC02G05820 Oryza punctata OPUNC02G05820 I 0.722
ORGLA02G0061500 Oryza glaberrima ORGLA02G0061500 I 0.722
ORUFI02G06760 Oryza rufipogon ORUFI02G06760 I 0.722
OS02G0187700 Oryza sativa OS02G0187700 D 0.722
30170.m013698 Ricinus communis 30170.m013698 I 0.720
cassava47374.m1 Manihot esculenta cassava47374.m1 I 0.720
SapurV1A.0597s0060 Salix purpurea SapurV1A.0597s0060 I 0.720
PK17282.1 Cannabis sativa PK17282.1 I 0.720
POPTR_0002s12410 Populus trichocarpa POPTR_0002s12410 I 0.718
SapurV1A.0167s0310 Salix purpurea SapurV1A.0167s0310 I 0.718
BRADI4G08220 Brachypodium distachyon BRADI4G08220 I 0.716
GLYMA04G04490 Glycine max GLYMA04G04490 I 0.711
PRUPE_ppa008979mg Prunus persica PRUPE_ppa008979mg I 0.711
Cla020946 Citrullus lanatus Cla020946 I 0.711
Pm005332 Prunus mume Pm005332 I 0.711
MDP0000463846 Malus domestica MDP0000463846 I 0.711
gene21001-v1.0-hybrid Fragaria vesca gene21001-v1.0-hybrid I 0.710
Cla014191 Citrullus lanatus Cla014191 I 0.708
Cucsa.102710 Cucumis sativus Cucsa.102710 I 0.708
Bo4g151410 Brassica oleracea Bo4g151410 I 0.707
Bo7g118450 Brassica oleracea Bo7g118450 I 0.707
Bra032176 Brassica rapa Bra032176 I 0.707
GLYMA14G09540 Glycine max GLYMA14G09540 I 0.707
GSMUA_Achr8G25220_001 Musa acuminata GSMUA_Achr8G25220_001 I 0.707
MDP0000275800 Malus domestica MDP0000275800 I 0.707
gene00185-v1.0-hybrid Fragaria vesca gene00185-v1.0-hybrid I 0.706
PGSC0003DMG400024983 Solanum tuberosum PGSC0003DMG400024983 I 0.704
Solyc02g092930.1 Solanum lycopersicum Solyc02g092930.1 I 0.704
TCM_000696 Theobroma cacao TCM_000696 I 0.704
29970.m000987 Ricinus communis 29970.m000987 I 0.704
cassava43120.valid.m1 Manihot esculenta cassava43120.valid.m1 I 0.704
Ciclev10026107m.g Citrus clementina Ciclev10026107m.g I 0.704
Gorai.007G055600 Gossypium raimondii Gorai.007G055600 I 0.704
Gorai.007G218100 Gossypium raimondii Gorai.007G218100 I 0.704
Gorai.010G023500 Gossypium raimondii Gorai.010G023500 I 0.704
orange1.1g021071m.g Citrus sinensis orange1.1g021071m.g I 0.704
Sb02g013010 Sorghum bicolor Sb02g013010 I 0.703
Sb10g024950 Sorghum bicolor Sb10g024950 I 0.703
Si032789m.g Setaria italica Si032789m.g I 0.703
Carubv10023692m.g Capsella rubella Carubv10023692m.g I 0.703
evm.TU.supercontig_21.145 Carica papaya evm.TU.supercontig_21.145 I 0.703
Pavir.Ba03084 Panicum virgatum Pavir.Ba03084 I 0.703
MTR_4g094982 Medicago truncatula MTR_4g094982 I 0.702
cassava8939.m1 Manihot esculenta cassava8939.m1 I 0.700
BGIOSGA030245 Oryza indica BGIOSGA030245 I 0.699
Bo3g153550 Brassica oleracea Bo3g153550 I 0.699
LPERR09G00910 Leersia perrieri LPERR09G00910 I 0.699
MLOC_64817 Hordeum vulgare MLOC_64817 I 0.699
OB09G10200 Oryza brachyantha OB09G10200 I 0.699
OBART09G00310 Oryza barthii OBART09G00310 I 0.699
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I 0.699
OMERI08G05160 Oryza meridionalis OMERI08G05160 I 0.699
ONIVA09G00250 Oryza nivara ONIVA09G00250 I 0.699
OPUNC12G06260 Oryza punctata OPUNC12G06260 I 0.699
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I 0.699
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I 0.699
OS09G0106700 Oryza sativa OS09G0106700 I 0.699
Traes_5BL_486D0D865 Triticum aestivum Traes_5BL_486D0D865 I 0.699
Traes_5DL_92CBBE968 Triticum aestivum Traes_5DL_92CBBE968 I 0.699
29801.m003096 Ricinus communis 29801.m003096 I 0.699
Aquca_007_00580 Aquilegia coerulea Aquca_007_00580 I 0.699
Thhalv10025742m.g Eutrema salsugineum Thhalv10025742m.g I 0.699
BRADI3G06470 Brachypodium distachyon BRADI3G06470 I 0.698
mgf002573m Mimulus guttatus mgf002573m I 0.696
Eucgr.K03010 Eucalyptus grandis Eucgr.K03010 I 0.696
AMTR_s00007p00169630 Amborella trichopoda AMTR_s00007p00169630 I 0.695
MTR_5g016510 Medicago truncatula MTR_5g016510 I 0.695
PRUPE_ppa008450mg Prunus persica PRUPE_ppa008450mg I 0.695
VIT_18s0001g09850 Vitis vinifera VIT_18s0001g09850 I 0.695
Ca_02182 Cicer arietinum Ca_02182 I 0.695
cassava2215.valid.m1 Manihot esculenta cassava2215.valid.m1 I 0.695
Eucgr.H02226 Eucalyptus grandis Eucgr.H02226 I 0.695
gene24027-v1.0-hybrid Fragaria vesca gene24027-v1.0-hybrid I 0.695
MDP0000196986 Malus domestica MDP0000196986 I 0.695
MDP0000232454 Malus domestica MDP0000232454 I 0.695
POPTR_0014s02260 Populus trichocarpa POPTR_0014s02260 I 0.694
Cucsa.352560 Cucumis sativus Cucsa.352560 I 0.694
SapurV1A.0919s0160 Salix purpurea SapurV1A.0919s0160 I 0.694
SapurV1A.1934s0020 Salix purpurea SapurV1A.1934s0020 I 0.694
Aquca_083_00054 Aquilegia coerulea Aquca_083_00054 I 0.690
Ciclev10029124m.g Citrus clementina Ciclev10029124m.g I 0.690
orange1.1g040502m.g Citrus sinensis orange1.1g040502m.g I 0.690
SapurV1A.0339s0020 Salix purpurea SapurV1A.0339s0020 I 0.690
Bra010593 Brassica rapa Bra010593 I 0.689
Cla022947 Citrullus lanatus Cla022947 I 0.688
Cucsa.073130 Cucumis sativus Cucsa.073130 I 0.688
Cucsa.395890 Cucumis sativus Cucsa.395890 I 0.688
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I 0.688
Gorai.009G215900 Gossypium raimondii Gorai.009G215900 I 0.688
e_gw1.9.342.1 Physcomitrella patens e_gw1.9.342.1 I 0.687
Bostr.27895s0157 Boechera stricta Bostr.27895s0157 I 0.687
evm.TU.supercontig_6.98 Carica papaya evm.TU.supercontig_6.98 I 0.687
Gorai.005G234900 Gossypium raimondii Gorai.005G234900 I 0.687
GRMZM2G050550 Zea mays GRMZM2G050550 I 0.686
GRMZM5G803308 Zea mays GRMZM5G803308 I 0.686
Si006938m.g Setaria italica Si006938m.g I 0.686
TCM_042474 Theobroma cacao TCM_042474 I 0.686
Pavir.Da00404 Panicum virgatum Pavir.Da00404 I 0.686
Pavir.Db00693 Panicum virgatum Pavir.Db00693 I 0.686
POPTR_0008s07100 Populus trichocarpa POPTR_0008s07100 I 0.685
VIT_13s0019g03200 Vitis vinifera VIT_13s0019g03200 I 0.685
29814.m000736 Ricinus communis 29814.m000736 I 0.685
cassava41257.m1 Manihot esculenta cassava41257.m1 I 0.685
PK01153.1 Cannabis sativa PK01153.1 I 0.685
Lus10010238.g Linum usitatissimum Lus10010238.g I 0.684
MYB73 Arabidopsis thaliana AT4G37260 D 0.682
Bo1g004900 Brassica oleracea Bo1g004900 I 0.682
Bra011749 Brassica rapa Bra011749 I 0.682
cassava7558.valid.m1 Manihot esculenta cassava7558.valid.m1 I 0.682
Bostr.7867s1585 Boechera stricta Bostr.7867s1585 I 0.682
Cagra.1232s0025 Capsella grandiflora Cagra.1232s0025 I 0.682
Carubv10007638m.g Capsella rubella Carubv10007638m.g I 0.682
GRMZM2G078820 Zea mays GRMZM2G078820 I 0.681
evm.TU.supercontig_56.79 Carica papaya evm.TU.supercontig_56.79 I 0.681
Thhalv10000438m.g Eutrema salsugineum Thhalv10000438m.g I 0.681
Ca_12468 Cicer arietinum Ca_12468 I 0.680
Lus10007503.g Linum usitatissimum Lus10007503.g I 0.680
Lus10028979.g Linum usitatissimum Lus10028979.g I 0.680
chr2.CM0002.110.nc Lotus japonicus chr2.CM0002.110.nc I 0.680
mgf020432m Mimulus guttatus mgf020432m I 0.679
AtMYB70 Arabidopsis thaliana AT2G23290 D 0.678
AtMYB70 Arabidopsis lyrata fgenesh2_kg.4__260__AT2G23290.1 I 0.678
GLYMA01G39740 Glycine max GLYMA01G39740 I 0.678
GLYMA11G05550 Glycine max GLYMA11G05550 I 0.678
VIT_07s0129g01050 Vitis vinifera VIT_07s0129g01050 I 0.678
Lus10010260.g Linum usitatissimum Lus10010260.g I 0.678
Lus10030336.g Linum usitatissimum Lus10030336.g I 0.678
PK28565.1 Cannabis sativa PK28565.1 D 0.678
chr2.CM0250.240.nd Lotus japonicus chr2.CM0250.240.nd I 0.678
Lus10040940.g Linum usitatissimum Lus10040940.g I 0.677
MYB44 Arabidopsis thaliana AT5G67300 D 0.676
Bo7g063830 Brassica oleracea Bo7g063830 I 0.676
Bra012149 Brassica rapa Bra012149 I 0.676
GLYMA09G12164 Glycine max GLYMA09G12164 N 0.676
MTR_6g015455 Medicago truncatula MTR_6g015455 I 0.676
ATMYBR1 Arabidopsis lyrata scaffold_803378.1 I 0.676
VIT_13s0067g01360 Vitis vinifera VIT_13s0067g01360 I 0.676
Bostr.0568s0154 Boechera stricta Bostr.0568s0154 I 0.676
Cagra.0342s0017 Capsella grandiflora Cagra.0342s0017 I 0.676
Carubv10027659m.g Capsella rubella Carubv10027659m.g I 0.676
Ciclev10032317m.g Citrus clementina Ciclev10032317m.g I 0.676
orange1.1g046570m.g Citrus sinensis orange1.1g046570m.g I 0.676
Thhalv10004676m.g Eutrema salsugineum Thhalv10004676m.g I 0.676
Aquca_007_00776 Aquilegia coerulea Aquca_007_00776 I 0.674
MDP0000298689 Malus domestica MDP0000298689 I 0.674
Cucsa.368410 Cucumis sativus Cucsa.368410 I 0.672
Aquca_009_00809 Aquilegia coerulea Aquca_009_00809 I 0.672
Bra007186 Brassica rapa Bra007186 I 0.671
Bostr.6864s0236 Boechera stricta Bostr.6864s0236 I 0.671
Gorai.002G009300 Gossypium raimondii Gorai.002G009300 I 0.671
SapurV1A.0708s0130 Salix purpurea SapurV1A.0708s0130 I 0.671
PRUPE_ppa017892mg Prunus persica PRUPE_ppa017892mg I 0.670
F3A4.140 Arabidopsis thaliana AT3G50060 D 0.668
Bo8g079430 Brassica oleracea Bo8g079430 I 0.668
MYB77 Arabidopsis lyrata fgenesh2_kg.5__1356__AT3G50060.1 I 0.668
Cla004431 Citrullus lanatus Cla004431 I 0.668
Bostr.22252s0145 Boechera stricta Bostr.22252s0145 I 0.668
Cagra.1549s0005 Capsella grandiflora Cagra.1549s0005 I 0.668
Carubv10019440m.g Capsella rubella Carubv10019440m.g I 0.668
Gorai.012G078200 Gossypium raimondii Gorai.012G078200 I 0.668
Thhalv10010581m.g Eutrema salsugineum Thhalv10010581m.g I 0.668
Bo2g167960 Brassica oleracea Bo2g167960 I 0.667
Bo7g117880 Brassica oleracea Bo7g117880 I 0.666
Bra034057 Brassica rapa Bra034057 I 0.666
POPTR_0007s10490 Populus trichocarpa POPTR_0007s10490 I 0.666
mgf014089m Mimulus guttatus mgf014089m I 0.665
SapurV1A.0650s0070 Salix purpurea SapurV1A.0650s0070 I 0.665
Cla006872 Citrullus lanatus Cla006872 I 0.664
Bostr.23794s0078 Boechera stricta Bostr.23794s0078 I 0.663
Cagra.10445s0001 Capsella grandiflora Cagra.10445s0001 I 0.663
Carubv10023414m.g Capsella rubella Carubv10023414m.g I 0.663
Gorai.012G149000 Gossypium raimondii Gorai.012G149000 I 0.663
Bo7g099180 Brassica oleracea Bo7g099180 I 0.662
Bo8g090160 Brassica oleracea Bo8g090160 I 0.662
Bra012910 Brassica rapa Bra012910 I 0.662
Bostr.20505s0177 Boechera stricta Bostr.20505s0177 I 0.662
Thhalv10010431m.g Eutrema salsugineum Thhalv10010431m.g I 0.662
LPERR06G18380 Leersia perrieri LPERR06G18380 I 0.661
MLOC_63964 Hordeum vulgare MLOC_63964 I 0.661
TRIUR3_25447 Triticum urartu TRIUR3_25447 I 0.661
VIT_03s0180g00210 Vitis vinifera VIT_03s0180g00210 I 0.661
Eucgr.E02958 Eucalyptus grandis Eucgr.E02958 I 0.661