POPTR_0002s14180 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0002s14180 T278219_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s14180.1 Myb 17 64
POPTR_0002s14180.1 Myb 71 115

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

87 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0033s0200 Salix purpurea SapurV1A.0033s0200 N 0.906
SapurV1A.0490s0170 Salix purpurea SapurV1A.0490s0170 N 0.886
POPTR_0014s05370 Populus trichocarpa POPTR_0014s05370 N 0.879
POPTR_0014s05420 Populus trichocarpa POPTR_0014s05420 N 0.879
TCM_005653 Theobroma cacao TCM_005653 N 0.879
Cagra.3527s0008 Capsella grandiflora Cagra.3527s0008 N 0.879
Carubv10019483m.g Capsella rubella Carubv10019483m.g N 0.879
evm.TU.supercontig_37.96 Carica papaya evm.TU.supercontig_37.96 N 0.879
30174.m008784 Ricinus communis 30174.m008784 N 0.862
Pm017596 Prunus mume Pm017596 N 0.859
MDP0000237596 Malus domestica MDP0000237596 N 0.859
MDP0000319634 Malus domestica MDP0000319634 N 0.859
DUO1 Arabidopsis thaliana AT3G60460 N 0.854
Bra003413 Brassica rapa Bra003413 N 0.854
DUO1 Arabidopsis lyrata fgenesh2_kg.5__2511__AT3G60460.1 N 0.854
Bostr.13158s0042 Boechera stricta Bostr.13158s0042 N 0.854
Eucgr.E01581 Eucalyptus grandis Eucgr.E01581 N 0.850
Bo6g077030 Brassica oleracea Bo6g077030 N 0.845
Thhalv10006475m.g Eutrema salsugineum Thhalv10006475m.g N 0.839
DUO1 Vitis vinifera VIT_15s0021g02040 N 0.837
mgf019330m Mimulus guttatus mgf019330m N 0.837
Ciclev10021345m.g Citrus clementina Ciclev10021345m.g N 0.837
orange1.1g038795m.g Citrus sinensis orange1.1g038795m.g N 0.837
PRUPE_ppa020326mg Prunus persica PRUPE_ppa020326mg N 0.834
GLYMA03G26830 Glycine max GLYMA03G26830 N 0.832
Gorai.004G165400 Gossypium raimondii Gorai.004G165400 N 0.831
gene04800-v1.0-hybrid Fragaria vesca gene04800-v1.0-hybrid N 0.830
PRUPE_ppa016603mg Prunus persica PRUPE_ppa016603mg N 0.826
Pm019530 Prunus mume Pm019530 N 0.826
Pm031387 Prunus mume Pm031387 N 0.826
LjT36B17.50.nd Lotus japonicus LjT36B17.50.nd N 0.825
Solyc01g090530.1 Solanum lycopersicum Solyc01g090530.1 N 0.824
GLYMA07G14480 Glycine max GLYMA07G14480 N 0.823
Ca_18954 Cicer arietinum Ca_18954 N 0.821
PGSC0003DMG400025720 Solanum tuberosum PGSC0003DMG400025720 N 0.820
Si012032m.g Setaria italica Si012032m.g N 0.815
Pavir.Gb01130 Panicum virgatum Pavir.Gb01130 N 0.815
cassava17368.m1 Manihot esculenta cassava17368.m1 N 0.814
MTR_8g006470 Medicago truncatula MTR_8g006470 N 0.813
gene12261-v1.0-hybrid Fragaria vesca gene12261-v1.0-hybrid N 0.813
Pavir.Fb01900 Panicum virgatum Pavir.Fb01900 N 0.810
Cla006831 Citrullus lanatus Cla006831 N 0.809
Aquca_081_00025 Aquilegia coerulea Aquca_081_00025 N 0.808
Pavir.J30013 Panicum virgatum Pavir.J30013 N 0.808
Pavir.J35399 Panicum virgatum Pavir.J35399 N 0.808
MTR_4g029540 Medicago truncatula MTR_4g029540 N 0.806
Bo8g095200 Brassica oleracea Bo8g095200 N 0.805
Bra007536 Brassica rapa Bra007536 N 0.805
Traes_2AL_0A21FB42C Triticum aestivum Traes_2AL_0A21FB42C N 0.804
Traes_2BL_855A1170C Triticum aestivum Traes_2BL_855A1170C N 0.804
BGIOSGA016880 Oryza indica BGIOSGA016880 N 0.800
GRMZM2G105137 Zea mays GRMZM2G105137 N 0.800
OB04G27810 Oryza brachyantha OB04G27810 N 0.800
OBART04G20790 Oryza barthii OBART04G20790 N 0.800
OGLUM04G20730 Oryza glumaepatula OGLUM04G20730 N 0.800
OMERI04G17240 Oryza meridionalis OMERI04G17240 N 0.800
ONIVA04G19030 Oryza nivara ONIVA04G19030 N 0.800
OPUNC04G18480 Oryza punctata OPUNC04G18480 N 0.800
ORGLA04G0178400 Oryza glaberrima ORGLA04G0178400 N 0.800
ORUFI04G22380 Oryza rufipogon ORUFI04G22380 N 0.800
Cucsa.121070 Cucumis sativus Cucsa.121070 N 0.795
Aquca_002_00029 Aquilegia coerulea Aquca_002_00029 N 0.792
cassava19913.m1 Manihot esculenta cassava19913.m1 N 0.787
Bostr.13158s0046 Boechera stricta Bostr.13158s0046 N 0.786
Solyc10g019260.1 Solanum lycopersicum Solyc10g019260.1 N 0.785
Pavir.Fa00479 Panicum virgatum Pavir.Fa00479 N 0.779
Traes_2DL_912473A86 Triticum aestivum Traes_2DL_912473A86 N 0.778
BRADI5G17600 Brachypodium distachyon BRADI5G17600 N 0.776
Si015815m.g Setaria italica Si015815m.g N 0.776
Sb06g024510 Sorghum bicolor Sb06g024510 N 0.772
TCM_014872 Theobroma cacao TCM_014872 N 0.772
Cla010897 Citrullus lanatus Cla010897 N 0.763
GRMZM2G311059 Zea mays GRMZM2G311059 N 0.762
Lus10009780.g Linum usitatissimum Lus10009780.g N 0.761
Sb07g027160 Sorghum bicolor Sb07g027160 N 0.760
Ca_19557 Cicer arietinum Ca_19557 N 0.757
GSMUA_Achr1G01660_001 Musa acuminata GSMUA_Achr1G01660_001 N 0.752
GLYMA09G00371 Glycine max GLYMA09G00371 N 0.751
GLYMA12G37026 Glycine max GLYMA12G37026 N 0.748
GRMZM2G046443 Zea mays GRMZM2G046443 N 0.743
Gorai.003G112700 Gossypium raimondii Gorai.003G112700 N 0.743
Cucsa.094180 Cucumis sativus Cucsa.094180 N 0.739
AMTR_s00111p00072510 Amborella trichopoda AMTR_s00111p00072510 N 0.723
mgf004314m Mimulus guttatus mgf004314m N 0.705
SELMODRAFT_116971 Selaginella moellendorffii SELMODRAFT_116971 N 0.677
SELMODRAFT_118852 Selaginella moellendorffii SELMODRAFT_118852 N 0.677
LPERR04G16870 Leersia perrieri LPERR04G16870 N 0.674