POPTR_0003s16150 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0003s16150 T278250_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASR3
M07053_2.00 		Arabidopsis thaliana
DNNNNHHWNDRCCCTWAW
WTWAGGGYHNWDDNNNNH		 Dap-seq
OMalley et al.(2016)
AT2G33550_col_a 		0.901 0.978
ASR3
M07054_2.00 		Arabidopsis thaliana
NHWDDTRCCCTWMW
WKWAGGGYAHHWDN		 Dap-seq
OMalley et al.(2016)
AT2G33550_colamp_a 		0.901 0.978
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s16150.1 Myb 42 109
POPTR_0003s16150.2 Myb 42 109

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0499s0110 Salix purpurea SapurV1A.0499s0110 I 0.909
ASR3 Arabidopsis thaliana AT2G33550 D 0.901
POPTR_0001s13060 Populus trichocarpa POPTR_0001s13060 I 0.901
Solyc04g045430.2 Solanum lycopersicum Solyc04g045430.2 I 0.901
30128.m008552 Ricinus communis 30128.m008552 I 0.901
cassava12909.valid.m1 Manihot esculenta cassava12909.valid.m1 I 0.901
cassava13649.valid.m1 Manihot esculenta cassava13649.valid.m1 I 0.901
mgf009760m Mimulus guttatus mgf009760m I 0.901
Ciclev10005329m.g Citrus clementina Ciclev10005329m.g I 0.901
evm.TU.supercontig_2461.1 Carica papaya evm.TU.supercontig_2461.1 I 0.901
Gorai.002G021600 Gossypium raimondii Gorai.002G021600 I 0.901
orange1.1g019057m.g Citrus sinensis orange1.1g019057m.g I 0.901
SapurV1A.2674s0010 Salix purpurea SapurV1A.2674s0010 I 0.901
Aquca_043_00021 Aquilegia coerulea Aquca_043_00021 I 0.881
Bo4g043600 Brassica oleracea Bo4g043600 I 0.861
Bo4g182020 Brassica oleracea Bo4g182020 I 0.861
Bra005486 Brassica rapa Bra005486 I 0.861
Bra021860 Brassica rapa Bra021860 I 0.861
scaffold_401930.1 Arabidopsis lyrata scaffold_401930.1 I 0.861
Bostr.23794s0746 Boechera stricta Bostr.23794s0746 I 0.861
Carubv10023675m.g Capsella rubella Carubv10023675m.g I 0.861
Thhalv10016974m.g Eutrema salsugineum Thhalv10016974m.g I 0.861
VIT_01s0150g00050 Vitis vinifera VIT_01s0150g00050 I 0.812
Cucsa.349220 Cucumis sativus Cucsa.349220 I 0.812
Eucgr.B03553 Eucalyptus grandis Eucgr.B03553 I 0.812
Pm024597 Prunus mume Pm024597 I 0.799
cassava40545.m1 Manihot esculenta cassava40545.m1 I 0.791
Cla001502 Citrullus lanatus Cla001502 I 0.772
PK25885.1 Cannabis sativa PK25885.1 I 0.757
GLYMA08G28880 Glycine max GLYMA08G28880 I 0.749
GLYMA18G51790 Glycine max GLYMA18G51790 I 0.749
MDP0000232058 Malus domestica MDP0000232058 I 0.749
chr1.LjT14I13.140.nd Lotus japonicus chr1.LjT14I13.140.nd I 0.749
AMTR_s00025p00072580 Amborella trichopoda AMTR_s00025p00072580 I 0.732
VIT_17s0000g00270 Vitis vinifera VIT_17s0000g00270 I 0.728
Ciclev10033491m.g Citrus clementina Ciclev10033491m.g I 0.712
orange1.1g038571m.g Citrus sinensis orange1.1g038571m.g I 0.703
Si017674m.g Setaria italica Si017674m.g I 0.691