POPTR_0004s15220 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0004s15220 T278271_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HHO6
M07024_2.00
Arabidopsis thaliana
GAATCTNNDAT

ATHNNAGATTC
Dap-seq
OMalley et al.(2016)
AT1G49560_col_a
0.827 0.894
HHO6
M07025_2.00
Arabidopsis thaliana
DGAATCTHNGATHCN

NGDATCNDAGATTCH
Dap-seq
OMalley et al.(2016)
AT1G49560_colamp_a
0.827 0.894
NIGT1
M02328_2.00
Oryza sativa
NNKATHCNNN

NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH8646
0.799 0.872
HHO3
M02289_2.00
Arabidopsis thaliana
NWGATWCBNN

NNVGWATCWN
PBM
Weirauch et al.(2014)
pTH7278
0.791 0.872
HHO3
M07016_2.00
Arabidopsis thaliana
NNDHNNAAKATTCY

RGAATMTTNNDHNN
Dap-seq
OMalley et al.(2016)
At1g25550_colamp_a
0.791 0.872
HHO3
M07017_2.00
Arabidopsis thaliana
HNNAAKATTCY

RGAATMTTNND
Dap-seq
OMalley et al.(2016)
At1g25550_col
0.791 0.872
HHO2
M02290_2.00
Arabidopsis thaliana
NNKATHCNNN

NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH7115
0.773 0.872
HHO2
M07029_2.00
Arabidopsis thaliana
AKATTCY

RGAATMT
Dap-seq
OMalley et al.(2016)
At1g68670_colamp_a
0.773 0.872
HHO2
M07030_2.00
Arabidopsis thaliana
RDATYNNAGATTC

GAATCTNNRATHY
Dap-seq
OMalley et al.(2016)
At1g68670_col
0.773 0.872
PK19779.1
M02354_2.00
Cannabis sativa
NNKATNCNNN

NNNGNATMNN
PBM
Weirauch et al.(2014)
pTH9610
0.750 0.872
PK14402.1
M02352_2.00
Cannabis sativa
NDWGATTCSNN

NNSGAATCWHN
PBM
Weirauch et al.(2014)
pTH9491
0.750 0.851
EFM
M07044_2.00
Arabidopsis thaliana
NNGAATATTCY

RGAATATTCNN
Dap-seq
OMalley et al.(2016)
At2g03500_col_a
0.745 0.872
EFM
M07045_2.00
Arabidopsis thaliana
RGAATCHWAGATTC

GAATCTWDGATTCY
Dap-seq
OMalley et al.(2016)
At2g03500_colamp_a
0.745 0.872
HRS1
M02284_2.00
Arabidopsis thaliana
AGATTCYN

NRGAATCT
PBM
Weirauch et al.(2014)
pTH7118
0.687 0.830
HRS1
M01068_2.00
Arabidopsis thaliana
NAGATTCBNN

NNVGAATCTN
PBM
Sullivan et al.(2014)
pTH7648
0.687 0.830
HRS1
M07004_2.00
Arabidopsis thaliana
NDDWWVNAAKATTCY

RGAATMTTNBWWHHN
Dap-seq
OMalley et al.(2016)
At1g13300_col_a
0.687 0.830
HHO5
M07112_2.00
Arabidopsis thaliana
HNDAAGATTCH

DGAATCTTHND
Dap-seq
OMalley et al.(2016)
AT4G37180_col_a
0.672 0.809
HHO5
M07113_2.00
Arabidopsis thaliana
NNDAAGATTCY

RGAATCTTHNN
Dap-seq
OMalley et al.(2016)
AT4G37180_colamp_a
0.672 0.809
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s15220.1 Myb 278 329

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

357 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL014322 Aedes aegypti AAEL014322 I
AALB008334 Anopheles albimanus AALB008334 I
AARA002094 Anopheles arabiensis AARA002094 I
AATE018889 Anopheles atroparvus AATE018889 I
ACHR010174 Anopheles christyi ACHR010174 I
ACOM034431 Anopheles coluzzii ACOM034431 I
ACUA006973 Anopheles culicifacies ACUA006973 I
ADAC002492 Anopheles darlingi ADAC002492 I
ADIR010448 Anopheles dirus ADIR010448 I
AEPI006062 Anopheles epiroticus AEPI006062 I
AFAF001067 Anopheles farauti AFAF001067 I
AFUN011634 Anopheles funestus AFUN011634 I
AMAM006832 Anopheles maculatus AMAM006832 I
AMEM001613 Anopheles merus AMEM001613 I
AMIN003460 Anopheles minimus AMIN003460 I
AQUA000514 Anopheles quadriannulatus AQUA000514 I
ASTEI05690 Anopheles stephensi ASTEI05690 I
A_07871 Schistosoma haematobium A_07871 I
CapteG36721 Capitella teleta CapteG36721 I
Cflo_03885--XP_001120527.1_APIME Camponotus floridanus Cflo_03885--XP_001120527.1_APIME I
CGI_10007380 Crassostrea gigas CGI_10007380 I
CLEC002330 Cimex lectularius CLEC002330 I
CPIJ005345 Culex quinquefasciatus CPIJ005345 I
CpipJ_CPIJ005345 Culex pipiens CpipJ_CPIJ005345 I
csin100742 Clonorchis sinensis csin100742 I
D915_09890 Fasciola hepatica D915_09890 I
D917_06339 Trichinella nativa D917_06339 I
D918_04086 Trichuris suis D918_04086 I
ECANG7_02004 Echinococcus canadensis ECANG7_02004 I
ECPE_0001678601 Echinostoma caproni ECPE_0001678601 I
EFV52759 Trichinella spiralis EFV52759 I
EmuJ_001053100 Echinococcus multilocularis EmuJ_001053100 I
ENSAMEG00000018197 Ailuropoda melanoleuca ENSAMEG00000018197 I
ENSBTAP00000002868-D1 Bos grunniens ENSBTAP00000002868-D1 I
ENSCSAG00000004934 Chlorocebus sabaeus ENSCSAG00000004934 I
ENSGMOG00000016963 Gadus morhua ENSGMOG00000016963 I
ENSMEUG00000014270 Macropus eugenii ENSMEUG00000014270 I
ENSMPUG00000013563 Mustela putorius furo ENSMPUG00000013563 I
ENSOARG00000025174 Ovis aries ENSOARG00000025174 I
ENSONIG00000007897 Oreochromis niloticus ENSONIG00000007897 I
ENSPANG00000011946 Papio anubis ENSPANG00000011946 I
ENSPFOG00000009843 Poecilia formosa ENSPFOG00000009843 I
ENSPPYG00000003449 Pongo abelii ENSPPYG00000003449 I
ENSSARG00000002401 Sorex araneus ENSSARG00000002401 I
ENSSHAG00000017220 Sarcophilus harrisii ENSSHAG00000017220 I
ENSSTOG00000011556 Ictidomys tridecemlineatus ENSSTOG00000011556 I
ENSXMAG00000009780 Xiphophorus maculatus ENSXMAG00000009780 I
fgenesh2_pg.scaffold_226000031 Branchiostoma floridae fgenesh2_pg.scaffold_226000031 I
fgenesh2_pg.scaffold_226000032 Branchiostoma floridae fgenesh2_pg.scaffold_226000032 I
fgenesh2_pg.scaffold_29000123 Branchiostoma floridae fgenesh2_pg.scaffold_29000123 I
GA10192 Drosophila pseudoobscura FBgn0070251 I
GB55306 Apis mellifera GB55306 I
GD18361 Drosophila simulans FBgn0189889 I
GE23932 Drosophila yakuba FBgn0241076 I
GF18746 Drosophila ananassae FBgn0095763 I
GG12413 Drosophila erecta FBgn0104701 I
GH13904 Drosophila grimshawi FBgn0121380 I
GI24830 Drosophila mojavensis FBgn0147551 I
GJ24474 Drosophila virilis FBgn0211554 I
GK22777 Drosophila willistoni FBgn0224749 I
GL13832 Drosophila persimilis FBgn0151437 I
GM23547 Drosophila sechellia FBgn0178413 I
HmN_000553800 Hymenolepis microstoma HmN_000553800 I
HNAJ_0001324201 Hymenolepis nana HNAJ_0001324201 I
Hsal_05065--XP_001120527.1_APIME Harpegnathos saltator Hsal_05065--XP_001120527.1_APIME I
LCUP007809 Lucilia cuprina LCUP007809 I
LDEC009949 Leptinotarsa decemlineata LDEC009949 I
LLOJ004446 Lutzomyia longipalpis LLOJ004446 I
MCOS_0000168001 Mesocestoides corti MCOS_0000168001 I
MYF6 Ochotona princeps ENSOPRG00000008999 I
MYOD1 Anolis carolinensis ENSACAG00000000054 I
MYOD1 Bos taurus ENSBTAG00000002216 I
MYOD1 Canis familiaris ENSCAFG00000009066 I
MYOD1 Callithrix jacchus ENSCJAG00000009258 I
MYOD1 Cavia porcellus ENSCPOG00000021351 I
MYOD1 Dasypus novemcinctus ENSDNOG00000017164 I
MYOD1 Equus caballus ENSECAG00000002132 I
MYOD1 Echinops telfairi ENSETEG00000003979 I
MYOD1 Felis catus ENSFCAG00000004973 I
MYOD1 Homo sapiens ENSG00000129152 D
MYOD1 Gorilla gorilla ENSGGOG00000008222 I
MYOD1 Loxodonta africana ENSLAFG00000018353 I
MYOD1 Microcebus murinus ENSMICG00000005566 I
MYOD1 Myotis lucifugus ENSMLUG00000007940 I
MYOD1 Macaca mulatta ENSMMUG00000006400 I
MYOD1 Monodelphis domestica ENSMODG00000006749 I
Myod1 Mus musculus ENSMUSG00000009471 D
MYOD1 Otolemur garnettii ENSOGAG00000029784 I
MYOD1 Ochotona princeps ENSOPRG00000002390 I
MYOD1 Procavia capensis ENSPCAG00000001317 I
MYOD1 Pan troglodytes ENSPTRG00000003406 I
MYOD1 Pteropus vampyrus ENSPVAG00000012829 I
Myod1 Rattus norvegicus ENSRNOG00000011306 I
MYOD1 Sus scrofa ENSSSCG00000013375 I
MYOD1 Tupaia belangeri ENSTBEG00000003438 I
MYOD1 Tursiops truncatus ENSTTRG00000013869 I
nau Drosophila melanogaster FBgn0002922 D
nRc.2.0.1.g24248 Romanomermis culicivorax nRc.2.0.1.g24248 I
NV10294 Nasonia vitripennis NV10294 I
Ocbimv22002759m.g Octopus bimaculoides Ocbimv22002759m.g I
RPRC009735 Rhodnius prolixus RPRC009735 I
SBAD_0001285401 Soboliphyme baturini SBAD_0001285401 I
Sjc_0011830 Schistosoma japonicum Sjc_0011830 I
Smp_167400 Schistosoma mansoni Smp_167400 I
SMU15001149 Schmidtea mediterranea SMU15001149 I
SPER_0001779001 Spirometra erinaceieuropaei SPER_0001779001 I
SPER_0002215301 Spirometra erinaceieuropaei SPER_0002215301 I
SPU_021119 Strongylocentrotus purpuratus SPU_021119 I
SSLN_0000613901 Schistocephalus solidus SSLN_0000613901 I
T265_10140 Opisthorchis viverrini T265_10140 I
TASK_0000583801 Taenia asiatica TASK_0000583801 I
TC015855 Tribolium castaneum TC015855 I
TMUE_s0045001800 Trichuris muris TMUE_s0045001800 I
TRE_0000306101 Trichobilharzia regenti TRE_0000306101 I
TsM_000079400 Taenia solium TsM_000079400 I
TTRE_0000002701 Trichuris trichiura TTRE_0000002701 I
YQE_11476 Dendroctonus ponderosae YQE_11476 I