POPTR_0006s06530 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0006s06530 T278294_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s06530.1 Myb 13 60
POPTR_0006s06530.1 Myb 66 111

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0018s12780 Populus trichocarpa POPTR_0018s12780 N 0.879
SapurV1A.0197s0090 Salix purpurea SapurV1A.0197s0090 N 0.876
SapurV1A.2191s0020 Salix purpurea SapurV1A.2191s0020 N 0.876
SapurV1A.0034s0330 Salix purpurea SapurV1A.0034s0330 N 0.855
Pm027586 Prunus mume Pm027586 I 0.837
PK01088.1 Cannabis sativa PK01088.1 I 0.837
MDP0000264051 Malus domestica MDP0000264051 I 0.833
Gorai.001G044000 Gossypium raimondii Gorai.001G044000 I 0.829
cassava32672.m1 Manihot esculenta cassava32672.m1 I 0.828
PRUPE_ppa016532mg Prunus persica PRUPE_ppa016532mg I 0.827
Cla016951 Citrullus lanatus Cla016951 I 0.824
Eucgr.C01374 Eucalyptus grandis Eucgr.C01374 I 0.821
gene31098-v1.0-hybrid Fragaria vesca gene31098-v1.0-hybrid I 0.819
TCM_038131 Theobroma cacao TCM_038131 I 0.818
evm.TU.supercontig_46.32 Carica papaya evm.TU.supercontig_46.32 I 0.816
MDP0000167314 Malus domestica MDP0000167314 I 0.811
Bo2g047590 Brassica oleracea Bo2g047590 I 0.807
Cucsa.132300 Cucumis sativus Cucsa.132300 N 0.800
Thhalv10014754m.g Eutrema salsugineum Thhalv10014754m.g I 0.800
Bra022602 Brassica rapa Bra022602 I 0.796
MYB82 Arabidopsis thaliana AT5G52600 I 0.795
Cagra.0084s0008 Capsella grandiflora Cagra.0084s0008 I 0.795
Carubv10028642m.g Capsella rubella Carubv10028642m.g I 0.795
Bostr.7305s0011 Boechera stricta Bostr.7305s0011 I 0.790
Gorai.004G276500 Gossypium raimondii Gorai.004G276500 N 0.777
AtMYB82 Arabidopsis lyrata Al_scaffold_0008_1642 I 0.774
Bo3g023140 Brassica oleracea Bo3g023140 I 0.756
Bra029113 Brassica rapa Bra029113 I 0.756
mgf023205m Mimulus guttatus mgf023205m I 0.756
VIT_11s0016g05690 Vitis vinifera VIT_11s0016g05690 N 0.748
PGSC0003DMG400030913 Solanum tuberosum PGSC0003DMG400030913 I 0.741
Solyc07g008010.2 Solanum lycopersicum Solyc07g008010.2 I 0.741
VIT_11s0016g05660 Vitis vinifera VIT_11s0016g05660 N 0.712
GLYMA10G35050 Glycine max GLYMA10G35050 I 0.682
cassava29820.valid.m1 Manihot esculenta cassava29820.valid.m1 I 0.676
GSMUA_Achr3G07940_001 Musa acuminata GSMUA_Achr3G07940_001 I 0.666
AMTR_s00024p00224850 Amborella trichopoda AMTR_s00024p00224850 I 0.665
GLYMA19G44660 Glycine max GLYMA19G44660 I 0.664
GLYMA20G32510 Glycine max GLYMA20G32510 I 0.662
PGSC0003DMG400027418 Solanum tuberosum PGSC0003DMG400027418 I 0.662