POPTR_0006s09860 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0006s09860 T278298_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G38090
M07055_2.00 		Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN
NVNRDWNWRGATAARNWTVDD		 Dap-seq
OMalley et al.(2016)
At2g38090_col_a 		0.787 0.872
PK27693.1
M01285_2.00 		Cannabis sativa
NNYTATCBNN
NNVGATARNN		 PBM
Lambert et al.(2019)
pTH11302 		0.778 0.883
PK27213.1
M01284_2.00 		Cannabis sativa
NHWATCNNNN
NNNNGATWDN		 PBM
Lambert et al.(2019)
pTH10196 		0.715 0.787
PK27213.1
M02356_2.00 		Cannabis sativa
NHHATCNNNN
NNNNGATDDN		 PBM
Weirauch et al.(2014)
pTH9600 		0.715 0.787
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s09860.1 Myb 133 180

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

106 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0016s11980 Populus trichocarpa POPTR_0016s11980 I 0.879
cassava43688.valid.m1 Manihot esculenta cassava43688.valid.m1 I 0.868
SapurV1A.0001s0790 Salix purpurea SapurV1A.0001s0790 I 0.868
SapurV1A.0778s0020 Salix purpurea SapurV1A.0778s0020 I 0.857
SapurV1A.3589s0010 Salix purpurea SapurV1A.3589s0010 I 0.857
28288.m000014 Ricinus communis 28288.m000014 I 0.853
TCM_021750 Theobroma cacao TCM_021750 I 0.844
Gorai.002G261600 Gossypium raimondii Gorai.002G261600 I 0.844
cassava30173.valid.m1 Manihot esculenta cassava30173.valid.m1 I 0.842
Gorai.012G112000 Gossypium raimondii Gorai.012G112000 I 0.840
Ciclev10012285m.g Citrus clementina Ciclev10012285m.g I 0.827
orange1.1g021756m.g Citrus sinensis orange1.1g021756m.g I 0.827
PRUPE_ppa009103mg Prunus persica PRUPE_ppa009103mg I 0.824
Pm002536 Prunus mume Pm002536 I 0.824
VIT_08s0007g01920 Vitis vinifera VIT_08s0007g01920 I 0.809
PGSC0003DMG400019129 Solanum tuberosum PGSC0003DMG400019129 I 0.798
GLYMA01G27720 Glycine max GLYMA01G27720 I 0.797
GLYMA03G14440 Glycine max GLYMA03G14440 I 0.797
MDP0000142580 Malus domestica MDP0000142580 I 0.796
MDP0000221993 Malus domestica MDP0000221993 I 0.796
MTR_7g067080 Medicago truncatula MTR_7g067080 I 0.792
AT2G38090 Arabidopsis thaliana AT2G38090 D 0.787
Bo3g032160 Brassica oleracea Bo3g032160 I 0.787
Bo4g029810 Brassica oleracea Bo4g029810 I 0.787
Bra000038 Brassica rapa Bra000038 I 0.787
Cagra.0090s0025 Capsella grandiflora Cagra.0090s0025 I 0.787
Carubv10023736m.g Capsella rubella Carubv10023736m.g I 0.787
evm.TU.supercontig_1130.1 Carica papaya evm.TU.supercontig_1130.1 I 0.787
gene18815-v1.0-hybrid Fragaria vesca gene18815-v1.0-hybrid I 0.784
Solyc10g076820.1 Solanum lycopersicum Solyc10g076820.1 I 0.782
Ca_19327 Cicer arietinum Ca_19327 I 0.782
PK27693.1 Cannabis sativa PK27693.1 D 0.778
Gorai.007G378300 Gossypium raimondii Gorai.007G378300 I 0.777
Bo4g187390 Brassica oleracea Bo4g187390 I 0.776
Bra005139 Brassica rapa Bra005139 I 0.776
Bra017138 Brassica rapa Bra017138 I 0.776
Bostr.23794s0264 Boechera stricta Bostr.23794s0264 I 0.776
Lus10018209.g Linum usitatissimum Lus10018209.g I 0.773
GLYMA07G17660 Glycine max GLYMA07G17660 I 0.770
GLYMA18G42530 Glycine max GLYMA18G42530 I 0.770
29681.m001296 Ricinus communis 29681.m001296 I 0.769
cassava23356.valid.m1 Manihot esculenta cassava23356.valid.m1 I 0.765
Gorai.006G180900 Gossypium raimondii Gorai.006G180900 I 0.764
fgenesh2_kg.4__1876__AT2G38090.1 Arabidopsis lyrata fgenesh2_kg.4__1876__AT2G38090.1 I 0.763
Thhalv10017008m.g Eutrema salsugineum Thhalv10017008m.g I 0.763
PGSC0003DMG400020344 Solanum tuberosum PGSC0003DMG400020344 I 0.761
Solyc09g014250.2 Solanum lycopersicum Solyc09g014250.2 I 0.761
Lus10040696.g Linum usitatissimum Lus10040696.g I 0.761
evm.TU.supercontig_112.58 Carica papaya evm.TU.supercontig_112.58 I 0.758
TCM_041672 Theobroma cacao TCM_041672 I 0.756
Eucgr.B02800 Eucalyptus grandis Eucgr.B02800 I 0.756
Cla018243 Citrullus lanatus Cla018243 I 0.752
Cucsa.164580 Cucumis sativus Cucsa.164580 I 0.749
Cucsa.176140 Cucumis sativus Cucsa.176140 I 0.748
Gorai.009G093700 Gossypium raimondii Gorai.009G093700 I 0.748
Cla018399 Citrullus lanatus Cla018399 I 0.745
GLYMA14G37050 Glycine max GLYMA14G37050 I 0.743
gene07984-v1.0-hybrid Fragaria vesca gene07984-v1.0-hybrid I 0.742
Cucsa.067080 Cucumis sativus Cucsa.067080 I 0.738
Cla004397 Citrullus lanatus Cla004397 I 0.736
PGSC0003DMG400030348 Solanum tuberosum PGSC0003DMG400030348 I 0.735
Solyc06g076770.2 Solanum lycopersicum Solyc06g076770.2 I 0.735
Lus10035518.g Linum usitatissimum Lus10035518.g I 0.732
POPTR_0009s04730 Populus trichocarpa POPTR_0009s04730 I 0.728
GLYMA11G22960 Glycine max GLYMA11G22960 I 0.727
GLYMA02G39000 Glycine max GLYMA02G39000 I 0.726
GLYMA11G34930 Glycine max GLYMA11G34930 I 0.725
GLYMA18G03430 Glycine max GLYMA18G03430 I 0.725
MTR_3g462790 Medicago truncatula MTR_3g462790 I 0.725
GLYMA02G42140 Glycine max GLYMA02G42140 I 0.721
cassava23290.valid.m1 Manihot esculenta cassava23290.valid.m1 I 0.720
Ciclev10028910m.g Citrus clementina Ciclev10028910m.g I 0.720
orange1.1g021816m.g Citrus sinensis orange1.1g021816m.g I 0.720
Ca_12513 Cicer arietinum Ca_12513 I 0.717
PK27213.1 Cannabis sativa PK27213.1 D 0.715
MTR_5g081860 Medicago truncatula MTR_5g081860 I 0.713
POPTR_0001s25590 Populus trichocarpa POPTR_0001s25590 I 0.708
SapurV1A.0041s0720 Salix purpurea SapurV1A.0041s0720 I 0.708
SapurV1A.0164s0380 Salix purpurea SapurV1A.0164s0380 I 0.708
MTR_5g069710 Medicago truncatula MTR_5g069710 I 0.706
Ca_15603 Cicer arietinum Ca_15603 I 0.705
PRUPE_ppa009072mg Prunus persica PRUPE_ppa009072mg I 0.704
29610.m000410 Ricinus communis 29610.m000410 I 0.700
Ca_14247 Cicer arietinum Ca_14247 I 0.695
Pm000529 Prunus mume Pm000529 I 0.695
Aquca_009_00736 Aquilegia coerulea Aquca_009_00736 I 0.695
Aquca_004_00289 Aquilegia coerulea Aquca_004_00289 I 0.686
Lus10028264.g Linum usitatissimum Lus10028264.g I 0.686
GSMUA_Achr8G02380_001 Musa acuminata GSMUA_Achr8G02380_001 I 0.684
GLYMA18G07250 Glycine max GLYMA18G07250 I 0.683
Gorai.012G075600 Gossypium raimondii Gorai.012G075600 I 0.683
mgf022442m Mimulus guttatus mgf022442m I 0.680
GSMUA_Achr10G00660_001 Musa acuminata GSMUA_Achr10G00660_001 I 0.679
GLYMA14G06750 Glycine max GLYMA14G06750 I 0.676
Lus10009884.g Linum usitatissimum Lus10009884.g I 0.674
Eucgr.J01940 Eucalyptus grandis Eucgr.J01940 I 0.673
Thhalv10014270m.g Eutrema salsugineum Thhalv10014270m.g I 0.673
POPTR_0010s20040 Populus trichocarpa POPTR_0010s20040 I 0.671
SapurV1A.0262s0080 Salix purpurea SapurV1A.0262s0080 I 0.671
SapurV1A.0709s0190 Salix purpurea SapurV1A.0709s0190 I 0.671
VIT_06s0004g06100 Vitis vinifera VIT_06s0004g06100 I 0.667
Cla013553 Citrullus lanatus Cla013553 I 0.666
Cucsa.139090 Cucumis sativus Cucsa.139090 I 0.666
cassava26873.m1 Manihot esculenta cassava26873.m1 I 0.664
Bra002610 Brassica rapa Bra002610 I 0.662
GSMUA_Achr5G28940_001 Musa acuminata GSMUA_Achr5G28940_001 I 0.661