POPTR_0006s23840 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0006s23840 T278313_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GRMZM2G005066
M11056_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$C1_Q2
0.733 0.742
MYB4
M02303_2.00
Arabidopsis thaliana
YACCWACY

RGTWGGTR
PBM
Weirauch et al.(2014)
pTH7075
0.729 0.763
MYB4
M07115_2.00
Arabidopsis thaliana
NYYACCWAMHWHNDD

HHNDWDKTWGGTRRN
Dap-seq
OMalley et al.(2016)
MYB4_col200_a
0.729 0.763
Q2TCH0_PETHY
M11072_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PH4_01
0.710 0.774
MYB111
M00882_2.00
Arabidopsis thaliana
NNNAMCDAMY

RKTHGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB111
0.709 0.774
MYB3
M02288_2.00
Arabidopsis thaliana
NNYACCTACCN

NGGTAGGTRNN
PBM
Weirauch et al.(2014)
pTH7125
0.695 0.720
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s23840.1 Myb 14 61
POPTR_0006s23840.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

746 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ZNF266 Callithrix jacchus ENSCJAG00000006176 N
ENSCSAG00000007688 Chlorocebus sabaeus ENSCSAG00000007688 N
ZNF266 Gorilla gorilla ENSGGOG00000014083 N
ENSP00000401750 Macaca fascicularis ENSP00000401750 N
ENSNLEG00000011980 Nomascus leucogenys ENSNLEG00000011980 N
ZNF266 Pan troglodytes ENSPTRG00000023219 N
ENSPPYG00000009527 Pongo abelii ENSPPYG00000009527 N