POPTR_0009s04730 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0009s04730 T278368_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK27213.1
M01284_2.00 		Cannabis sativa
NHWATCNNNN
NNNNGATWDN		 PBM
Lambert et al.(2019)
pTH10196 		0.827 0.904
PK27213.1
M02356_2.00 		Cannabis sativa
NHHATCNNNN
NNNNGATDDN		 PBM
Weirauch et al.(2014)
pTH9600 		0.827 0.904
AT2G38090
M07055_2.00 		Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN
NVNRDWNWRGATAARNWTVDD		 Dap-seq
OMalley et al.(2016)
At2g38090_col_a 		0.732 0.840
PK27693.1
M01285_2.00 		Cannabis sativa
NNYTATCBNN
NNVGATARNN		 PBM
Lambert et al.(2019)
pTH11302 		0.716 0.830
AT5G58900
M07146_2.00 		Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD		 Dap-seq
OMalley et al.(2016)
At5g58900_col_a 		0.706 0.851
AT5G58900
M07147_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a 		0.706 0.851
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s04730.1 Myb 135 182

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK27213.1 Cannabis sativa PK27213.1 D 0.827
29681.m001296 Ricinus communis 29681.m001296 I 0.792
POPTR_0001s25590 Populus trichocarpa POPTR_0001s25590 I 0.789
Cucsa.164580 Cucumis sativus Cucsa.164580 I 0.784
SapurV1A.0041s0720 Salix purpurea SapurV1A.0041s0720 I 0.780
SapurV1A.0164s0380 Salix purpurea SapurV1A.0164s0380 I 0.780
GLYMA02G39000 Glycine max GLYMA02G39000 I 0.778
GLYMA14G37050 Glycine max GLYMA14G37050 I 0.778
cassava23356.valid.m1 Manihot esculenta cassava23356.valid.m1 I 0.777
Ciclev10028910m.g Citrus clementina Ciclev10028910m.g I 0.776
orange1.1g021816m.g Citrus sinensis orange1.1g021816m.g I 0.776
Lus10040696.g Linum usitatissimum Lus10040696.g I 0.774
evm.TU.supercontig_112.58 Carica papaya evm.TU.supercontig_112.58 I 0.771
Gorai.009G093700 Gossypium raimondii Gorai.009G093700 I 0.771
Aquca_009_00736 Aquilegia coerulea Aquca_009_00736 I 0.770
Cla004397 Citrullus lanatus Cla004397 I 0.766
PGSC0003DMG400030348 Solanum tuberosum PGSC0003DMG400030348 I 0.765
Solyc06g076770.2 Solanum lycopersicum Solyc06g076770.2 I 0.765
GLYMA11G22960 Glycine max GLYMA11G22960 I 0.764
Lus10018209.g Linum usitatissimum Lus10018209.g I 0.763
TCM_021750 Theobroma cacao TCM_021750 I 0.762
TCM_041672 Theobroma cacao TCM_041672 I 0.762
Aquca_004_00289 Aquilegia coerulea Aquca_004_00289 I 0.761
MTR_3g462790 Medicago truncatula MTR_3g462790 I 0.760
VIT_08s0007g01920 Vitis vinifera VIT_08s0007g01920 I 0.760
Ca_15603 Cicer arietinum Ca_15603 I 0.757
Ciclev10012285m.g Citrus clementina Ciclev10012285m.g I 0.753
orange1.1g021756m.g Citrus sinensis orange1.1g021756m.g I 0.753
mgf022442m Mimulus guttatus mgf022442m I 0.752
Ca_14247 Cicer arietinum Ca_14247 I 0.747
gene07984-v1.0-hybrid Fragaria vesca gene07984-v1.0-hybrid I 0.747
MTR_5g069710 Medicago truncatula MTR_5g069710 I 0.741
Cla013553 Citrullus lanatus Cla013553 I 0.741
cassava43688.valid.m1 Manihot esculenta cassava43688.valid.m1 I 0.741
Cucsa.139090 Cucumis sativus Cucsa.139090 I 0.741
Gorai.002G261600 Gossypium raimondii Gorai.002G261600 I 0.741
Bo9g135730 Brassica oleracea Bo9g135730 I 0.739
MTR_7g067080 Medicago truncatula MTR_7g067080 I 0.737
POPTR_0016s11980 Populus trichocarpa POPTR_0016s11980 I 0.737
Ca_19327 Cicer arietinum Ca_19327 I 0.737
Gorai.012G112000 Gossypium raimondii Gorai.012G112000 I 0.737
MDP0000142580 Malus domestica MDP0000142580 I 0.737
MDP0000221993 Malus domestica MDP0000221993 I 0.737
Lus10009884.g Linum usitatissimum Lus10009884.g I 0.736
AT2G38090 Arabidopsis thaliana AT2G38090 D 0.732
Bo3g032160 Brassica oleracea Bo3g032160 I 0.732
Bo4g029810 Brassica oleracea Bo4g029810 I 0.732
Bo4g187390 Brassica oleracea Bo4g187390 I 0.732
Bra000038 Brassica rapa Bra000038 I 0.732
Bra005139 Brassica rapa Bra005139 I 0.732
Bra017138 Brassica rapa Bra017138 I 0.732
28288.m000014 Ricinus communis 28288.m000014 I 0.732
cassava23290.valid.m1 Manihot esculenta cassava23290.valid.m1 I 0.732
cassava30173.valid.m1 Manihot esculenta cassava30173.valid.m1 I 0.732
Bostr.23794s0264 Boechera stricta Bostr.23794s0264 I 0.732
Cagra.0090s0025 Capsella grandiflora Cagra.0090s0025 I 0.732
Carubv10023736m.g Capsella rubella Carubv10023736m.g I 0.732
GLYMA02G42140 Glycine max GLYMA02G42140 I 0.731
Thhalv10014270m.g Eutrema salsugineum Thhalv10014270m.g I 0.730
GLYMA11G34930 Glycine max GLYMA11G34930 I 0.729
GLYMA18G03430 Glycine max GLYMA18G03430 I 0.729
PGSC0003DMG400019129 Solanum tuberosum PGSC0003DMG400019129 I 0.728
POPTR_0006s09860 Populus trichocarpa POPTR_0006s09860 I 0.728
PRUPE_ppa009103mg Prunus persica PRUPE_ppa009103mg I 0.728
Pm002536 Prunus mume Pm002536 I 0.728
Ca_12513 Cicer arietinum Ca_12513 I 0.727
GLYMA07G17660 Glycine max GLYMA07G17660 I 0.726
GLYMA18G42530 Glycine max GLYMA18G42530 I 0.726
evm.TU.supercontig_1130.1 Carica papaya evm.TU.supercontig_1130.1 I 0.726
Lus10014837.g Linum usitatissimum Lus10014837.g I 0.725
SapurV1A.0778s0020 Salix purpurea SapurV1A.0778s0020 I 0.721
SapurV1A.3589s0010 Salix purpurea SapurV1A.3589s0010 I 0.721
Ciclev10032309m.g Citrus clementina Ciclev10032309m.g I 0.720
orange1.1g023196m.g Citrus sinensis orange1.1g023196m.g I 0.720
Bra002610 Brassica rapa Bra002610 I 0.719
GLYMA18G07250 Glycine max GLYMA18G07250 I 0.719
Bo3g018460 Brassica oleracea Bo3g018460 I 0.717
Bra006741 Brassica rapa Bra006741 I 0.717
MTR_5g081860 Medicago truncatula MTR_5g081860 I 0.717
SapurV1A.0001s0790 Salix purpurea SapurV1A.0001s0790 I 0.717
POPTR_0010s20040 Populus trichocarpa POPTR_0010s20040 I 0.716
cassava26873.m1 Manihot esculenta cassava26873.m1 I 0.716
SapurV1A.0262s0080 Salix purpurea SapurV1A.0262s0080 I 0.716
PK27693.1 Cannabis sativa PK27693.1 D 0.716
gene18815-v1.0-hybrid Fragaria vesca gene18815-v1.0-hybrid I 0.714
Solyc10g076820.1 Solanum lycopersicum Solyc10g076820.1 I 0.713
Gorai.007G378300 Gossypium raimondii Gorai.007G378300 I 0.712
Eucgr.J01940 Eucalyptus grandis Eucgr.J01940 I 0.711
Gorai.012G075600 Gossypium raimondii Gorai.012G075600 I 0.711
fgenesh2_kg.4__1876__AT2G38090.1 Arabidopsis lyrata fgenesh2_kg.4__1876__AT2G38090.1 I 0.708
Thhalv10017008m.g Eutrema salsugineum Thhalv10017008m.g I 0.708
AT5G58900 Arabidopsis thaliana AT5G58900 D 0.706
fgenesh2_kg.8__1829__AT5G58900.1 Arabidopsis lyrata fgenesh2_kg.8__1829__AT5G58900.1 I 0.706
Bostr.26833s0356 Boechera stricta Bostr.26833s0356 I 0.706
Cagra.0891s0087 Capsella grandiflora Cagra.0891s0087 I 0.706
Carubv10026903m.g Capsella rubella Carubv10026903m.g I 0.706
Pm000529 Prunus mume Pm000529 I 0.705
29610.m000410 Ricinus communis 29610.m000410 I 0.705
POPTR_0008s06450 Populus trichocarpa POPTR_0008s06450 I 0.703
cassava1257.valid.m1 Manihot esculenta cassava1257.valid.m1 I 0.703
GLYMA01G27720 Glycine max GLYMA01G27720 I 0.700
GLYMA03G14440 Glycine max GLYMA03G14440 I 0.700
Gorai.006G180900 Gossypium raimondii Gorai.006G180900 I 0.697
PRUPE_ppa009072mg Prunus persica PRUPE_ppa009072mg I 0.696
VIT_06s0004g06100 Vitis vinifera VIT_06s0004g06100 I 0.695
SapurV1A.0709s0190 Salix purpurea SapurV1A.0709s0190 I 0.692
MDP0000243328 Malus domestica MDP0000243328 I 0.690
MDP0000255630 Malus domestica MDP0000255630 I 0.690
MDP0000292581 Malus domestica MDP0000292581 I 0.690
Lus10028264.g Linum usitatissimum Lus10028264.g I 0.689
Eucgr.B02800 Eucalyptus grandis Eucgr.B02800 I 0.687
GLYMA14G06750 Glycine max GLYMA14G06750 I 0.686
PGSC0003DMG400027126 Solanum tuberosum PGSC0003DMG400027126 I 0.681
Solyc05g052610.2 Solanum lycopersicum Solyc05g052610.2 I 0.681
PGSC0003DMG400020344 Solanum tuberosum PGSC0003DMG400020344 I 0.677
Solyc09g014250.2 Solanum lycopersicum Solyc09g014250.2 I 0.677
evm.TU.supercontig_19.216 Carica papaya evm.TU.supercontig_19.216 I 0.675
VIT_13s0019g03370 Vitis vinifera VIT_13s0019g03370 I 0.674
TCM_042604 Theobroma cacao TCM_042604 I 0.673
PK15104.1 Cannabis sativa PK15104.1 I 0.669
Cla018243 Citrullus lanatus Cla018243 I 0.666