POPTR_0010s20040 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0010s20040 T278400_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G11280
M01075_2.00 		Arabidopsis thaliana
NNTTATCNNN
NNNGATAANN		 PBM
Sullivan et al.(2014)
pTH7245 		0.747 0.798
AT3G11280
M07074_2.00 		Arabidopsis thaliana
DWDWDGATAAKRWW
WWYMTTATCHWHWH		 Dap-seq
OMalley et al.(2016)
At3g11280_col_a 		0.747 0.798
AT3G11280
M07075_2.00 		Arabidopsis thaliana
NNWNNDGATAAGRWHDNN
NNHDWYCTTATCHNNWNN		 Dap-seq
OMalley et al.(2016)
At3g11280_colamp_a 		0.747 0.798
PK27213.1
M01284_2.00 		Cannabis sativa
NHWATCNNNN
NNNNGATWDN		 PBM
Lambert et al.(2019)
pTH10196 		0.677 0.777
PK27213.1
M02356_2.00 		Cannabis sativa
NHHATCNNNN
NNNNGATDDN		 PBM
Weirauch et al.(2014)
pTH9600 		0.677 0.777
AT2G38090
M07055_2.00 		Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN
NVNRDWNWRGATAARNWTVDD		 Dap-seq
OMalley et al.(2016)
At2g38090_col_a 		0.668 0.777
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s20040.1 Myb 119 166

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

104 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0262s0080 Salix purpurea SapurV1A.0262s0080 I 0.909
29610.m000410 Ricinus communis 29610.m000410 I 0.856
cassava26873.m1 Manihot esculenta cassava26873.m1 I 0.850
POPTR_0008s06450 Populus trichocarpa POPTR_0008s06450 I 0.834
cassava1257.valid.m1 Manihot esculenta cassava1257.valid.m1 I 0.834
PK15104.1 Cannabis sativa PK15104.1 I 0.811
Ciclev10032309m.g Citrus clementina Ciclev10032309m.g I 0.810
orange1.1g023196m.g Citrus sinensis orange1.1g023196m.g I 0.793
GLYMA11G34930 Glycine max GLYMA11G34930 I 0.790
GLYMA18G03430 Glycine max GLYMA18G03430 I 0.790
Gorai.012G075600 Gossypium raimondii Gorai.012G075600 I 0.790
evm.TU.supercontig_19.216 Carica papaya evm.TU.supercontig_19.216 I 0.789
SapurV1A.0709s0190 Salix purpurea SapurV1A.0709s0190 I 0.788
Lus10028264.g Linum usitatissimum Lus10028264.g I 0.784
PGSC0003DMG400027126 Solanum tuberosum PGSC0003DMG400027126 I 0.777
Solyc05g052610.2 Solanum lycopersicum Solyc05g052610.2 I 0.777
PRUPE_ppa018139mg Prunus persica PRUPE_ppa018139mg I 0.772
VIT_13s0019g03370 Vitis vinifera VIT_13s0019g03370 I 0.772
Pm018878 Prunus mume Pm018878 I 0.772
GLYMA02G42140 Glycine max GLYMA02G42140 I 0.765
GLYMA14G06750 Glycine max GLYMA14G06750 I 0.765
MTR_5g081860 Medicago truncatula MTR_5g081860 I 0.757
Lus10014837.g Linum usitatissimum Lus10014837.g I 0.756
evm.TU.supercontig_19.217 Carica papaya evm.TU.supercontig_19.217 I 0.754
Lus10009884.g Linum usitatissimum Lus10009884.g I 0.749
AT3G11280 Arabidopsis thaliana AT3G11280 D 0.747
Bo5g136680 Brassica oleracea Bo5g136680 I 0.747
Bra034173 Brassica rapa Bra034173 I 0.747
fgenesh2_kg.3__1170__AT3G11280.1 Arabidopsis lyrata fgenesh2_kg.3__1170__AT3G11280.1 I 0.747
Thhalv10021322m.g Eutrema salsugineum Thhalv10021322m.g I 0.747
Ca_12513 Cicer arietinum Ca_12513 I 0.744
MDP0000277813 Malus domestica MDP0000277813 I 0.744
Solyc03g096350.2 Solanum lycopersicum Solyc03g096350.2 I 0.740
Bra034853 Brassica rapa Bra034853 I 0.736
Bostr.19424s1061 Boechera stricta Bostr.19424s1061 I 0.736
Cagra.1655s0043 Capsella grandiflora Cagra.1655s0043 I 0.736
Carubv10014411m.g Capsella rubella Carubv10014411m.g I 0.736
Cla004397 Citrullus lanatus Cla004397 I 0.732
POPTR_0001s25590 Populus trichocarpa POPTR_0001s25590 I 0.731
Bo1g141120 Brassica oleracea Bo1g141120 I 0.730
mgf010347m Mimulus guttatus mgf010347m I 0.730
gene20912-v1.0-hybrid Fragaria vesca gene20912-v1.0-hybrid I 0.721
TCM_042604 Theobroma cacao TCM_042604 I 0.719
Cucsa.164580 Cucumis sativus Cucsa.164580 I 0.719
POPTR_0009s04730 Populus trichocarpa POPTR_0009s04730 I 0.716
MDP0000221993 Malus domestica MDP0000221993 I 0.712
mgf022442m Mimulus guttatus mgf022442m I 0.711
PGSC0003DMG400020730 Solanum tuberosum PGSC0003DMG400020730 I 0.706
MDP0000809640 Malus domestica MDP0000809640 I 0.702
PRUPE_ppa009103mg Prunus persica PRUPE_ppa009103mg I 0.696
Pm002536 Prunus mume Pm002536 I 0.696
MDP0000142580 Malus domestica MDP0000142580 I 0.696
Cla013553 Citrullus lanatus Cla013553 I 0.695
Cla018399 Citrullus lanatus Cla018399 I 0.695
Cucsa.139090 Cucumis sativus Cucsa.139090 I 0.695
Ciclev10012285m.g Citrus clementina Ciclev10012285m.g I 0.689
orange1.1g021756m.g Citrus sinensis orange1.1g021756m.g I 0.689
SapurV1A.0778s0020 Salix purpurea SapurV1A.0778s0020 I 0.689
SapurV1A.3589s0010 Salix purpurea SapurV1A.3589s0010 I 0.689
Cucsa.067080 Cucumis sativus Cucsa.067080 I 0.688
Lus10040696.g Linum usitatissimum Lus10040696.g I 0.688
Ciclev10028910m.g Citrus clementina Ciclev10028910m.g I 0.686
orange1.1g021816m.g Citrus sinensis orange1.1g021816m.g I 0.686
Bo9g176900 Brassica oleracea Bo9g176900 I 0.683
Bra009134 Brassica rapa Bra009134 I 0.683
VIT_08s0007g01920 Vitis vinifera VIT_08s0007g01920 I 0.683
gene18815-v1.0-hybrid Fragaria vesca gene18815-v1.0-hybrid I 0.682
POPTR_0016s11980 Populus trichocarpa POPTR_0016s11980 I 0.680
GLYMA07G17660 Glycine max GLYMA07G17660 I 0.678
GLYMA18G42530 Glycine max GLYMA18G42530 I 0.678
TCM_021750 Theobroma cacao TCM_021750 I 0.678
cassava43688.valid.m1 Manihot esculenta cassava43688.valid.m1 I 0.678
evm.TU.supercontig_1130.1 Carica papaya evm.TU.supercontig_1130.1 I 0.678
Gorai.002G261600 Gossypium raimondii Gorai.002G261600 I 0.678
Gorai.006G180900 Gossypium raimondii Gorai.006G180900 I 0.678
Lus10018209.g Linum usitatissimum Lus10018209.g I 0.677
SapurV1A.0041s0720 Salix purpurea SapurV1A.0041s0720 I 0.677
SapurV1A.0164s0380 Salix purpurea SapurV1A.0164s0380 I 0.677
PK27213.1 Cannabis sativa PK27213.1 D 0.677
Aquca_009_00736 Aquilegia coerulea Aquca_009_00736 I 0.675
MTR_7g067080 Medicago truncatula MTR_7g067080 I 0.674
Ca_19327 Cicer arietinum Ca_19327 I 0.674
Gorai.012G112000 Gossypium raimondii Gorai.012G112000 I 0.674
Gorai.007G378300 Gossypium raimondii Gorai.007G378300 I 0.673
POPTR_0006s09860 Populus trichocarpa POPTR_0006s09860 I 0.671
Bo9g135730 Brassica oleracea Bo9g135730 I 0.669
28288.m000014 Ricinus communis 28288.m000014 I 0.669
29681.m001296 Ricinus communis 29681.m001296 I 0.669
cassava30173.valid.m1 Manihot esculenta cassava30173.valid.m1 I 0.669
AT2G38090 Arabidopsis thaliana AT2G38090 D 0.668
Bo3g032160 Brassica oleracea Bo3g032160 I 0.668
Bo4g029810 Brassica oleracea Bo4g029810 I 0.668
Bo4g187390 Brassica oleracea Bo4g187390 I 0.668
Bra000038 Brassica rapa Bra000038 I 0.668
Bra005139 Brassica rapa Bra005139 I 0.668
Bra017138 Brassica rapa Bra017138 I 0.668
Bostr.23794s0264 Boechera stricta Bostr.23794s0264 I 0.668
Cagra.0090s0025 Capsella grandiflora Cagra.0090s0025 I 0.668
Carubv10023736m.g Capsella rubella Carubv10023736m.g I 0.668
GLYMA02G39000 Glycine max GLYMA02G39000 I 0.665
GLYMA14G37050 Glycine max GLYMA14G37050 I 0.665
Gorai.009G093700 Gossypium raimondii Gorai.009G093700 I 0.665
cassava23356.valid.m1 Manihot esculenta cassava23356.valid.m1 I 0.664
SapurV1A.0001s0790 Salix purpurea SapurV1A.0001s0790 I 0.661