POPTR_0011s17060 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0011s17060 T278414_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB80
M07142_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHNN
NNDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MS188_col_a 		0.841 0.935
MYB80
M07143_2.00 		Arabidopsis thaliana
YYYACCTAMYTWNNN
NNNWARKTAGGTRRR		 Dap-seq
OMalley et al.(2016)
MS188_colamp_a 		0.841 0.935
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0011s17060.1 Myb 14 61
POPTR_0011s17060.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WRKY70 Arabidopsis thaliana AT3G56400 D
Al_scaffold_0004_2305 Arabidopsis lyrata Al_scaffold_0004_2305 I
AMTR_s00077p00103580 Amborella trichopoda AMTR_s00077p00103580 I
AMTR_s00077p00103880 Amborella trichopoda AMTR_s00077p00103880 I
WRKY54 Arabidopsis thaliana AT2G40750 I
BGIOSGA019621 Oryza indica BGIOSGA019621 I
BGIOSGA030535 Oryza indica BGIOSGA030535 I
Bo00913s010 Brassica oleracea Bo00913s010 I
Bo3g035140 Brassica oleracea Bo3g035140 I
Bo3g039240 Brassica oleracea Bo3g039240 I
Bo4g009270 Brassica oleracea Bo4g009270 I
Bo4g012750 Brassica oleracea Bo4g012750 I
Bo4g190390 Brassica oleracea Bo4g190390 I
Bo6g071110 Brassica oleracea Bo6g071110 I
Bo8g090820 Brassica oleracea Bo8g090820 I
Bra000203 Brassica rapa Bra000203 I
Bra003239 Brassica rapa Bra003239 I
Bra004540 Brassica rapa Bra004540 I
Bra004586 Brassica rapa Bra004586 I
Bra007243 Brassica rapa Bra007243 I
Bra014692 Brassica rapa Bra014692 I
Bra016974 Brassica rapa Bra016974 I
BRADI1G63220 Brachypodium distachyon BRADI1G63220 I
BRADI2G30695 Brachypodium distachyon BRADI2G30695 I
BRADI2G44270 Brachypodium distachyon BRADI2G44270 I
F775_32858 Aegilops tauschii F775_32858 I
fgenesh1_pm.C_scaffold_4001818 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001818 I
WRKY70 Arabidopsis lyrata fgenesh2_kg.5__2072__AT3G56400.1 I
GLYMA03G00460 Glycine max GLYMA03G00460 I
GLYMA04G40130 Glycine max GLYMA04G40130 I
GLYMA06G14720 Glycine max GLYMA06G14720 I
GLYMA14G36430 Glycine max GLYMA14G36430 I
GLYMA14G36446 Glycine max GLYMA14G36446 I
GLYMA16G34590 Glycine max GLYMA16G34590 I
GRMZM2G004060 Zea mays GRMZM2G004060 I
GRMZM2G025895 Zea mays GRMZM2G025895 I
GRMZM2G061408 Zea mays GRMZM2G061408 I
GRMZM2G163418 Zea mays GRMZM2G163418 I
GSMUA_Achr1G27980_001 Musa acuminata GSMUA_Achr1G27980_001 I
GSMUA_Achr5G07490_001 Musa acuminata GSMUA_Achr5G07490_001 I
GSMUA_Achr8G01730_001 Musa acuminata GSMUA_Achr8G01730_001 I
GSMUA_Achr9G04830_001 Musa acuminata GSMUA_Achr9G04830_001 I
GSMUA_AchrUn_randomG24820_001 Musa acuminata GSMUA_AchrUn_randomG24820_001 I
LPERR05G09130 Leersia perrieri LPERR05G09130 I
MLOC_17779 Hordeum vulgare MLOC_17779 I
MLOC_5971 Hordeum vulgare MLOC_5971 I
MLOC_65699 Hordeum vulgare MLOC_65699 I
MLOC_66134 Hordeum vulgare MLOC_66134 I
MLOC_74974 Hordeum vulgare MLOC_74974 I
MTR_3g090860 Medicago truncatula MTR_3g090860 I
MTR_3g093830 Medicago truncatula MTR_3g093830 I
MTR_5g067700 Medicago truncatula MTR_5g067700 I
MTR_7g073380 Medicago truncatula MTR_7g073380 I
OBART05G11710 Oryza barthii OBART05G11710 I
OGLUM05G12430 Oryza glumaepatula OGLUM05G12430 I
OMERI05G10380 Oryza meridionalis OMERI05G10380 I
ONIVA05G12100 Oryza nivara ONIVA05G12100 I
ONIVA09G05410 Oryza nivara ONIVA09G05410 I
OPUNC05G10020 Oryza punctata OPUNC05G10020 I
ORGLA05G0099400 Oryza glaberrima ORGLA05G0099400 I
ORUFI05G12710 Oryza rufipogon ORUFI05G12710 I
OS05G0322900 Oryza sativa OS05G0322900 I
PGSC0003DMG400008391 Solanum tuberosum PGSC0003DMG400008391 I
PGSC0003DMG400020608 Solanum tuberosum PGSC0003DMG400020608 I
PGSC0003DMG400029207 Solanum tuberosum PGSC0003DMG400029207 I
POPTR_0013s09470 Populus trichocarpa POPTR_0013s09470 I
POPTR_0016s14490 Populus trichocarpa POPTR_0016s14490 I
PRUPE_ppa020736mg Prunus persica PRUPE_ppa020736mg I
PRUPE_ppa025912mg Prunus persica PRUPE_ppa025912mg I
PRUPE_ppa026125mg Prunus persica PRUPE_ppa026125mg I
PRUPE_ppa026704mg Prunus persica PRUPE_ppa026704mg I
Sb02g022280 Sorghum bicolor Sb02g022280 I
Sb06g013835 Sorghum bicolor Sb06g013835 I
Sb08g005080 Sorghum bicolor Sb08g005080 I
Si022702m.g Setaria italica Si022702m.g I
Si030531m.g Setaria italica Si030531m.g I
Solyc03g095770.2 Solanum lycopersicum Solyc03g095770.2 I
Solyc09g015770.2 Solanum lycopersicum Solyc09g015770.2 I
TCM_019689 Theobroma cacao TCM_019689 I
TCM_045556 Theobroma cacao TCM_045556 I
Traes_5AL_B4E8A3115 Triticum aestivum Traes_5AL_B4E8A3115 I
Traes_7DL_A9EF00572 Triticum aestivum Traes_7DL_A9EF00572 I
TRIUR3_04352 Triticum urartu TRIUR3_04352 I
VIT_13s0067g03140 Vitis vinifera VIT_13s0067g03140 I
Ca_03952 Cicer arietinum Ca_03952 I
Ca_04100 Cicer arietinum Ca_04100 I
Ca_09495 Cicer arietinum Ca_09495 I
Cla007424 Citrullus lanatus Cla007424 I
Pm003013 Prunus mume Pm003013 I
Pm003014 Prunus mume Pm003014 I
Pm003015 Prunus mume Pm003015 I
Pm019286 Prunus mume Pm019286 I
29729.m002369 Ricinus communis 29729.m002369 I
29915.m000479 Ricinus communis 29915.m000479 I
cassava23183.valid.m1 Manihot esculenta cassava23183.valid.m1 I
cassava36286.valid.m1 Manihot esculenta cassava36286.valid.m1 I
cassava43790.valid.m1 Manihot esculenta cassava43790.valid.m1 I
cassava7524.valid.m1 Manihot esculenta cassava7524.valid.m1 I
cassava7525.valid.m1 Manihot esculenta cassava7525.valid.m1 I
Cucsa.177060 Cucumis sativus Cucsa.177060 I
mgf002542m Mimulus guttatus mgf002542m I
mgf009193m Mimulus guttatus mgf009193m I
Aquca_027_00037 Aquilegia coerulea Aquca_027_00037 I
Bostr.20505s0112 Boechera stricta Bostr.20505s0112 I
Bostr.9345s0060 Boechera stricta Bostr.9345s0060 I
Cagra.0925s0056 Capsella grandiflora Cagra.0925s0056 I
Cagra.1642s0039 Capsella grandiflora Cagra.1642s0039 I
Carubv10017349m.g Capsella rubella Carubv10017349m.g I
Carubv10024972m.g Capsella rubella Carubv10024972m.g I
Ciclev10032192m.g Citrus clementina Ciclev10032192m.g I
Ciclev10033384m.g Citrus clementina Ciclev10033384m.g I
Eucgr.G03145 Eucalyptus grandis Eucgr.G03145 I
Eucgr.J00106 Eucalyptus grandis Eucgr.J00106 I
evm.TU.supercontig_19.44 Carica papaya evm.TU.supercontig_19.44 I
gene13546-v1.0-hybrid Fragaria vesca gene13546-v1.0-hybrid I
gene13547-v1.0-hybrid Fragaria vesca gene13547-v1.0-hybrid I
gene13549-v1.0-hybrid Fragaria vesca gene13549-v1.0-hybrid I
gene13554-v1.0-hybrid Fragaria vesca gene13554-v1.0-hybrid I
gene21365-v1.0-hybrid Fragaria vesca gene21365-v1.0-hybrid I
Gorai.001G155800 Gossypium raimondii Gorai.001G155800 I
Gorai.005G003900 Gossypium raimondii Gorai.005G003900 I
Gorai.009G292600 Gossypium raimondii Gorai.009G292600 I
Gorai.010G219200 Gossypium raimondii Gorai.010G219200 I
Gorai.012G014000 Gossypium raimondii Gorai.012G014000 I
Gorai.013G008300 Gossypium raimondii Gorai.013G008300 I
Lus10029021.g Linum usitatissimum Lus10029021.g I
Lus10034244.g Linum usitatissimum Lus10034244.g I
MDP0000175240 Malus domestica MDP0000175240 I
MDP0000754989 Malus domestica MDP0000754989 I
MDP0000828055 Malus domestica MDP0000828055 I
orange1.1g018407m.g Citrus sinensis orange1.1g018407m.g I
orange1.1g021598m.g Citrus sinensis orange1.1g021598m.g I
Pavir.Ba02544 Panicum virgatum Pavir.Ba02544 I
Pavir.Ba02545 Panicum virgatum Pavir.Ba02545 I
Pavir.Ba02750 Panicum virgatum Pavir.Ba02750 I
Pavir.Bb01218 Panicum virgatum Pavir.Bb01218 I
Pavir.Bb02088 Panicum virgatum Pavir.Bb02088 I
Pavir.Ca02012 Panicum virgatum Pavir.Ca02012 I
Pavir.Cb01173 Panicum virgatum Pavir.Cb01173 I
Pavir.J03334 Panicum virgatum Pavir.J03334 I
SapurV1A.0065s0580 Salix purpurea SapurV1A.0065s0580 I
SapurV1A.0356s0010 Salix purpurea SapurV1A.0356s0010 I
SapurV1A.0914s0120 Salix purpurea SapurV1A.0914s0120 I
Thhalv10006146m.g Eutrema salsugineum Thhalv10006146m.g I
PK03324.1 Cannabis sativa PK03324.1 I
PK21378.1 Cannabis sativa PK21378.1 I
chr1.CM0320.400.nd Lotus japonicus chr1.CM0320.400.nd I
PDK_20s1519811g002 Phoenix dactylifera PDK_20s1519811g002 I
PDK_20s1535141g002 Phoenix dactylifera PDK_20s1535141g002 I
PDK_20s1571901g001 Phoenix dactylifera PDK_20s1571901g001 I
OLONG_021882 Oryza longistaminata OLONG_021882 N