CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0011s17060
(
Populus trichocarpa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
POPTR_0011s17060
T278414_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB80
M07142_2.00
Arabidopsis thaliana
NYYYACCTAMYWHNN
NNDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MS188_col_a
0.841
0.935
MYB80
M07143_2.00
Arabidopsis thaliana
YYYACCTAMYTWNNN
NNNWARKTAGGTRRR
Dap-seq
OMalley et al.(2016)
MS188_colamp_a
0.841
0.935
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0011s17060.1
Myb
14
61
RGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL
POPTR_0011s17060.1
Myb
67
112
HGQFSDAEEHTIVKLHSVVGNRWSLIAAQLPGRTDNDVKNHWNTKL
Links
Other
Myb/SANT
family TFs
Other
Populus trichocarpa
TFs
83 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_22620
Aegilops tauschii
F775_22620
I
0.878
Aquca_001_00247
Aquilegia coerulea
Aquca_001_00247
I
0.664
Aquca_005_00315
Aquilegia coerulea
Aquca_005_00315
I
0.867
Al_scaffold_0008_2049
Arabidopsis lyrata
Al_scaffold_0008_2049
I
0.841
AtMYB103
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8001268
I
0.837
MYB80
Arabidopsis thaliana
AT5G56110
D
0.841
Bostr.26833s0652
Boechera stricta
Bostr.26833s0652
I
0.832
BRADI5G13041
Brachypodium distachyon
BRADI5G13041
I
0.857
Bo1g051220
Brassica oleracea
Bo1g051220
I
0.673
Bo2g036530
Brassica oleracea
Bo2g036530
I
0.839
Bo9g123440
Brassica oleracea
Bo9g123440
I
0.830
Bra035604
Brassica rapa
Bra035604
I
0.858
Bra026281
Brassica rapa
Bra026281
I
0.673
Bra002847
Brassica rapa
Bra002847
I
0.841
Cagra.3745s0008
Capsella grandiflora
Cagra.3745s0008
I
0.841
Carubv10027619m.g
Capsella rubella
Carubv10027619m.g
I
0.841
evm.TU.supercontig_12.83
Carica papaya
evm.TU.supercontig_12.83
I
0.875
Ca_17657
Cicer arietinum
Ca_17657
I
0.900
Cla019747
Citrullus lanatus
Cla019747
I
0.667
Cla007838
Citrullus lanatus
Cla007838
I
0.671
Cla004524
Citrullus lanatus
Cla004524
I
0.889
Ciclev10008921m.g
Citrus clementina
Ciclev10008921m.g
I
0.886
Cucsa.148040
Cucumis sativus
Cucsa.148040
I
0.671
Cucsa.126220
Cucumis sativus
Cucsa.126220
I
0.667
Cucsa.041880
Cucumis sativus
Cucsa.041880
I
0.900
Eucgr.F03656
Eucalyptus grandis
Eucgr.F03656
I
0.859
Thhalv10015622m.g
Eutrema salsugineum
Thhalv10015622m.g
I
0.841
Thhalv10027463m.g
Eutrema salsugineum
Thhalv10027463m.g
I
0.673
gene01457-v1.0-hybrid
Fragaria vesca
gene01457-v1.0-hybrid
I
0.893
GLYMA18G07960
Glycine max
GLYMA18G07960
I
0.900
GLYMA19G36830
Glycine max
GLYMA19G36830
I
0.666
Gorai.009G454000
Gossypium raimondii
Gorai.009G454000
I
0.900
Gorai.006G162800
Gossypium raimondii
Gorai.006G162800
I
0.673
LPERR04G12420
Leersia perrieri
LPERR04G12420
I
0.887
Lus10026543.g
Linum usitatissimum
Lus10026543.g
I
0.677
Lus10013830.g
Linum usitatissimum
Lus10013830.g
I
0.677
Lus10011606.g
Linum usitatissimum
Lus10011606.g
I
0.677
MDP0000786507
Malus domestica
MDP0000786507
I
0.662
MDP0000262514
Malus domestica
MDP0000262514
I
0.662
MDP0000124992
Malus domestica
MDP0000124992
I
0.662
cassava33918.m1
Manihot esculenta
cassava33918.m1
I
0.900
MTR_3g461490
Medicago truncatula
MTR_3g461490
I
0.884
MTR_4g097570
Medicago truncatula
MTR_4g097570
I
0.670
GSMUA_Achr5G01930_001
Musa acuminata
GSMUA_Achr5G01930_001
I
0.661
GSMUA_Achr6G31740_001
Musa acuminata
GSMUA_Achr6G31740_001
I
0.665
OB04G23000
Oryza brachyantha
OB04G23000
I
0.878
ORGLA04G0126700
Oryza glaberrima
ORGLA04G0126700
I
0.878
OGLUM04G15520
Oryza glumaepatula
OGLUM04G15520
I
0.878
BGIOSGA030830
Oryza indica
BGIOSGA030830
I
0.859
BGIOSGA014912
Oryza indica
BGIOSGA014912
I
0.878
OMERI04G13500
Oryza meridionalis
OMERI04G13500
I
0.878
ONIVA04G13800
Oryza nivara
ONIVA04G13800
I
0.878
OPUNC04G13560
Oryza punctata
OPUNC04G13560
I
0.878
ORUFI04G17000
Oryza rufipogon
ORUFI04G17000
I
0.878
Pavir.Ga01401
Panicum virgatum
Pavir.Ga01401
I
0.878
Pavir.J28142
Panicum virgatum
Pavir.J28142
I
0.763
estExt_Genewise1.C_360117
Physcomitrella patens
estExt_Genewise1.C_360117
N
0.667
gw1.65.181.1
Physcomitrella patens
gw1.65.181.1
N
0.667
POPTR_0001s47430
Populus trichocarpa
POPTR_0001s47430
I
0.880
POPTR_0011s04000
Populus trichocarpa
POPTR_0011s04000
N
0.668
PRUPE_ppa021719mg
Prunus persica
PRUPE_ppa021719mg
I
0.900
PRUPE_ppa024417mg
Prunus persica
PRUPE_ppa024417mg
I
0.662
SapurV1A.0395s0050
Salix purpurea
SapurV1A.0395s0050
I
0.863
SapurV1A.0338s0180
Salix purpurea
SapurV1A.0338s0180
I
0.858
Si012130m.g
Setaria italica
Si012130m.g
I
0.878
Solyc02g091980.1
Solanum lycopersicum
Solyc02g091980.1
I
0.679
Solyc04g077260.2
Solanum lycopersicum
Solyc04g077260.2
I
0.666
Solyc07g054840.2
Solanum lycopersicum
Solyc07g054840.2
I
0.680
Solyc10g005760.1
Solanum lycopersicum
Solyc10g005760.1
I
0.865
Solyc10g008700.1
Solanum lycopersicum
Solyc10g008700.1
I
0.671
PGSC0003DMG400026628
Solanum tuberosum
PGSC0003DMG400026628
I
0.671
PGSC0003DMG400021401
Solanum tuberosum
PGSC0003DMG400021401
I
0.679
PGSC0003DMG400018331
Solanum tuberosum
PGSC0003DMG400018331
I
0.680
PGSC0003DMG400008687
Solanum tuberosum
PGSC0003DMG400008687
I
0.865
PGSC0003DMG400004948
Solanum tuberosum
PGSC0003DMG400004948
I
0.666
Sb06g019650
Sorghum bicolor
Sb06g019650
I
0.878
TCM_030529
Theobroma cacao
TCM_030529
I
0.883
Traes_2DL_A03AB7608
Triticum aestivum
Traes_2DL_A03AB7608
I
0.834
Traes_2BL_361925B62
Triticum aestivum
Traes_2BL_361925B62
I
0.878
TRIUR3_35325
Triticum urartu
TRIUR3_35325
I
0.878
AtMYB103
Vitis vinifera
VIT_19s0015g01280
I
0.900
GRMZM2G104789
Zea mays
GRMZM2G104789
I
0.668
GRMZM2G173633
Zea mays
GRMZM2G173633
I
0.878