CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0012s13900
(
Populus trichocarpa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
POPTR_0012s13900
T278429_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0012s13900.1
Myb
144
194
KVVWTNSLHNRFLLALNHIGLDKAVPKRILECMSVRGLSRENIASHLQKYR
POPTR_0012s13900.2
Myb
144
194
KVVWTNSLHNRFLLALNHIGLDKAVPKRILECMSVRGLSRENIASHLQKYR
Links
Other
Myb/SANT
family TFs
Other
Populus trichocarpa
TFs
37 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
POPTR_0015s13860
Populus trichocarpa
POPTR_0015s13860
I
0.831
SapurV1A.0400s0190
Salix purpurea
SapurV1A.0400s0190
N
0.815
30147.m014309
Ricinus communis
30147.m014309
N
0.807
cassava35050.m1
Manihot esculenta
cassava35050.m1
N
0.792
Ciclev10006586m.g
Citrus clementina
Ciclev10006586m.g
N
0.792
orange1.1g040406m.g
Citrus sinensis
orange1.1g040406m.g
N
0.792
PRUPE_ppa023185mg
Prunus persica
PRUPE_ppa023185mg
N
0.758
gene13325-v1.0-hybrid
Fragaria vesca
gene13325-v1.0-hybrid
N
0.758
Ciclev10006834m.g
Citrus clementina
Ciclev10006834m.g
N
0.727
orange1.1g043479m.g
Citrus sinensis
orange1.1g043479m.g
N
0.727
TCM_015085
Theobroma cacao
TCM_015085
I
0.720
IGS.gm_5_00099
Chlorella NC64A
IGS.gm_5_00099
N
0.719
evm.TU.supercontig_107.3
Carica papaya
evm.TU.supercontig_107.3
N
0.714
mgf019327m
Mimulus guttatus
mgf019327m
N
0.713
Gorai.008G280500
Gossypium raimondii
Gorai.008G280500
I
0.705
Cla006313
Citrullus lanatus
Cla006313
N
0.701
Cucsa.251000
Cucumis sativus
Cucsa.251000
N
0.701
mgf018042m
Mimulus guttatus
mgf018042m
N
0.698
ARR21
Arabidopsis thaliana
AT5G07210
N
0.695
cassava21270.m1
Manihot esculenta
cassava21270.m1
N
0.694
VIT_16s0100g00420
Vitis vinifera
VIT_16s0100g00420
I
0.680
Cla007104
Citrullus lanatus
Cla007104
N
0.680
GLYMA16G32311
Glycine max
GLYMA16G32311
I
0.678
Carubv10006317m.g
Capsella rubella
Carubv10006317m.g
N
0.676
MTR_0450s0040
Medicago truncatula
MTR_0450s0040
I
0.674
cassava37074.valid.m1
Manihot esculenta
cassava37074.valid.m1
I
0.671
cassava37075.valid.m1
Manihot esculenta
cassava37075.valid.m1
I
0.671
Gorai.001G030600
Gossypium raimondii
Gorai.001G030600
I
0.671
GLYMA09G27151
Glycine max
GLYMA09G27151
N
0.668
VIT_16s0100g00430
Vitis vinifera
VIT_16s0100g00430
N
0.667
Bo2g007540
Brassica oleracea
Bo2g007540
N
0.664
Bo9g175250
Brassica oleracea
Bo9g175250
N
0.664
Bra009284
Brassica rapa
Bra009284
N
0.664
Bra028705
Brassica rapa
Bra028705
N
0.664
MDP0000228719
Malus domestica
MDP0000228719
N
0.664
Thhalv10016040m.g
Eutrema salsugineum
Thhalv10016040m.g
N
0.664