POPTR_0015s08700 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0015s08700 T278476_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WER
M11047_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WEREWOLF_Q2_01 		0.713 0.789
WER
M11048_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WEREWOLF_Q2 		0.713 0.789
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0015s08700.1 Myb 12 61
POPTR_0015s08700.1 Myb 67 122

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.J02212 Eucalyptus grandis Eucgr.J02212 I 0.761
TCM_012057 Theobroma cacao TCM_012057 I 0.757
Gorai.007G001800 Gossypium raimondii Gorai.007G001800 I 0.748
Pm024725 Prunus mume Pm024725 I 0.745
MDP0000578193 Malus domestica MDP0000578193 I 0.735
Eucgr.B00373 Eucalyptus grandis Eucgr.B00373 I 0.731
PRUPE_ppa010908mg Prunus persica PRUPE_ppa010908mg I 0.729
cassava26193.m1 Manihot esculenta cassava26193.m1 I 0.726
POPTR_0012s08190 Populus trichocarpa POPTR_0012s08190 I 0.721
SapurV1A.1404s0020 Salix purpurea SapurV1A.1404s0020 I 0.721
evm.TU.supercontig_124.57 Carica papaya evm.TU.supercontig_124.57 I 0.719
Thhalv10005428m.g Eutrema salsugineum Thhalv10005428m.g I 0.719
VIT_17s0000g08480 Vitis vinifera VIT_17s0000g08480 I 0.718
MDP0000650225 Malus domestica MDP0000650225 I 0.718
SapurV1A.1178s0050 Salix purpurea SapurV1A.1178s0050 I 0.718
WER Arabidopsis thaliana AT5G14750 D 0.713
Bo2g012170 Brassica oleracea Bo2g012170 I 0.713
WER Arabidopsis lyrata fgenesh2_kg.6__1454__AT5G14750.1 I 0.713
Bostr.2902s0211 Boechera stricta Bostr.2902s0211 I 0.713
Cagra.3166s0078 Capsella grandiflora Cagra.3166s0078 I 0.713
Carubv10001990m.g Capsella rubella Carubv10001990m.g I 0.713
Thhalv10014715m.g Eutrema salsugineum Thhalv10014715m.g I 0.713
Bra023486 Brassica rapa Bra023486 I 0.707
Bo9g165670 Brassica oleracea Bo9g165670 I 0.696
Bra008740 Brassica rapa Bra008740 I 0.696
POPTR_0015s08680 Populus trichocarpa POPTR_0015s08680 I 0.692
SapurV1A.1178s0040 Salix purpurea SapurV1A.1178s0040 N 0.691
Bostr.1460s0063 Boechera stricta Bostr.1460s0063 I 0.690
Bra025311 Brassica rapa Bra025311 I 0.689
Aquca_002_00170 Aquilegia coerulea Aquca_002_00170 I 0.689
cassava28702.m1 Manihot esculenta cassava28702.m1 I 0.685
TCM_016886 Theobroma cacao TCM_016886 I 0.682
gene32181-v1.0-hybrid Fragaria vesca gene32181-v1.0-hybrid I 0.679
LjT16O05.150.nd Lotus japonicus LjT16O05.150.nd I 0.679
Bo7g090950 Brassica oleracea Bo7g090950 I 0.678
VIT_14s0066g01220 Vitis vinifera VIT_14s0066g01220 I 0.676
Bra039065 Brassica rapa Bra039065 I 0.672
Aquca_025_00333 Aquilegia coerulea Aquca_025_00333 I 0.667
TCM_004509 Theobroma cacao TCM_004509 I 0.665
TCM_037376 Theobroma cacao TCM_037376 I 0.665
VIT_04s0008g01800 Vitis vinifera VIT_04s0008g01800 I 0.665
Eucgr.C00724 Eucalyptus grandis Eucgr.C00724 I 0.665
Eucgr.C03555 Eucalyptus grandis Eucgr.C03555 I 0.663
POPTR_0006s23840 Populus trichocarpa POPTR_0006s23840 I 0.662
PRUPE_ppa022205mg Prunus persica PRUPE_ppa022205mg I 0.662
Pm005570 Prunus mume Pm005570 I 0.662
MDP0000031172 Malus domestica MDP0000031172 I 0.662
MDP0000210851 Malus domestica MDP0000210851 I 0.662
SapurV1A.0710s0070 Salix purpurea SapurV1A.0710s0070 I 0.662