CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
POPTR_0017s10780
(
Populus trichocarpa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
POPTR_0017s10780
T278506_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0017s10780.1
Myb
1
24
WSKIAKHLPGRTDNEIKNYWRTRI
Links
Other
Myb/SANT
family TFs
Other
Populus trichocarpa
TFs
94 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LjSGA_014958.1
Lotus japonicus
LjSGA_014958.1
N
0.867
Cagra.5789s0001
Capsella grandiflora
Cagra.5789s0001
N
0.853
PDK_20s1922781g001
Phoenix dactylifera
PDK_20s1922781g001
N
0.853
Cagra.0876s0043
Capsella grandiflora
Cagra.0876s0043
N
0.849
cassava15703.m1
Manihot esculenta
cassava15703.m1
N
0.847
Traes_7AS_FD974A17F
Triticum aestivum
Traes_7AS_FD974A17F
N
0.843
Pavir.Db00878
Panicum virgatum
Pavir.Db00878
N
0.843
LjSGA_057664.1
Lotus japonicus
LjSGA_057664.1
N
0.836
Traes_7DS_76515C538
Triticum aestivum
Traes_7DS_76515C538
N
0.832
Pavir.J25377
Panicum virgatum
Pavir.J25377
N
0.832
PGSC0003DMG401010883
Solanum tuberosum
PGSC0003DMG401010883
N
0.831
mgf023771m
Mimulus guttatus
mgf023771m
N
0.829
mgf018056m
Mimulus guttatus
mgf018056m
N
0.828
chr1.CM0600.120.nd
Lotus japonicus
chr1.CM0600.120.nd
N
0.828
OB06G28240
Oryza brachyantha
OB06G28240
N
0.825
TCM_041010
Theobroma cacao
TCM_041010
I
0.825
cassava45648.m1
Manihot esculenta
cassava45648.m1
N
0.825
Eucgr.B03766
Eucalyptus grandis
Eucgr.B03766
N
0.825
Pavir.Eb02286
Panicum virgatum
Pavir.Eb02286
N
0.825
Pavir.J14839
Panicum virgatum
Pavir.J14839
N
0.825
CM0385.220.nd
Lotus japonicus
CM0385.220.nd
N
0.825
LjSGA_034303.1
Lotus japonicus
LjSGA_034303.1
N
0.819
MLOC_39554
Hordeum vulgare
MLOC_39554
I
0.818
LjSGA_057038.1
Lotus japonicus
LjSGA_057038.1
N
0.816
MTR_1g087540
Medicago truncatula
MTR_1g087540
N
0.807
ORGLA02G0219000
Oryza glaberrima
ORGLA02G0219000
N
0.804
POPTR_0013s05310
Populus trichocarpa
POPTR_0013s05310
I
0.798
Traes_7AS_ADDEF000C
Triticum aestivum
Traes_7AS_ADDEF000C
N
0.798
Pm000007
Prunus mume
Pm000007
N
0.798
Bostr.13129s0196
Boechera stricta
Bostr.13129s0196
I
0.794
Ca_10215
Cicer arietinum
Ca_10215
N
0.789
chr5.CM0071.390.nd
Lotus japonicus
chr5.CM0071.390.nd
N
0.788
F775_42755
Aegilops tauschii
F775_42755
N
0.787
PK21717.1
Cannabis sativa
PK21717.1
N
0.786
Gorai.008G086400
Gossypium raimondii
Gorai.008G086400
I
0.778
PGSC0003DMG400014550
Solanum tuberosum
PGSC0003DMG400014550
I
0.776
MDP0000879675
Malus domestica
MDP0000879675
N
0.758
e_gw1.1.4.1
Physcomitrella patens
e_gw1.1.4.1
N
0.744
mgf020736m
Mimulus guttatus
mgf020736m
N
0.744
MYB3
Arabidopsis thaliana
AT1G22640
D
0.742
MLOC_71332
Hordeum vulgare
MLOC_71332
N
0.740
Traes_3AL_F09C7CA19
Triticum aestivum
Traes_3AL_F09C7CA19
N
0.740
Traes_3DL_D9A29948B
Triticum aestivum
Traes_3DL_D9A29948B
N
0.740
Pavir.Eb03517
Panicum virgatum
Pavir.Eb03517
I
0.740
ATMYB16
Arabidopsis thaliana
AT5G15310
I
0.735
Gorai.012G186500
Gossypium raimondii
Gorai.012G186500
I
0.735
GLYMA09G04370
Glycine max
GLYMA09G04370
I
0.729
GRMZM2G001223
Zea mays
GRMZM2G001223
I
0.728
MDP0000911051
Malus domestica
MDP0000911051
N
0.728
Bo8g104180
Brassica oleracea
Bo8g104180
N
0.727
cassava2662.m1
Manihot esculenta
cassava2662.m1
N
0.726
Bo4g198650
Brassica oleracea
Bo4g198650
N
0.720
Bra024685
Brassica rapa
Bra024685
N
0.719
Solyc03g098270.1
Solanum lycopersicum
Solyc03g098270.1
N
0.719
mgf017705m
Mimulus guttatus
mgf017705m
N
0.719
AMTR_s00009p00257950
Amborella trichopoda
AMTR_s00009p00257950
N
0.718
OS04G0517100
Oryza sativa
OS04G0517100
N
0.718
evm.TU.supercontig_34.3
Carica papaya
evm.TU.supercontig_34.3
N
0.718
Pavir.Eb00654
Panicum virgatum
Pavir.Eb00654
I
0.716
evm.TU.supercontig_1.55
Carica papaya
evm.TU.supercontig_1.55
N
0.713
Traes_5AS_D238844BB
Triticum aestivum
Traes_5AS_D238844BB
N
0.712
GRMZM2G051528
Zea mays
GRMZM2G051528
I
0.710
MDP0000119369
Malus domestica
MDP0000119369
N
0.709
MLOC_12474
Hordeum vulgare
MLOC_12474
N
0.707
AMTR_s00057p00069720
Amborella trichopoda
AMTR_s00057p00069720
N
0.702
PK00358.1
Cannabis sativa
PK00358.1
N
0.702
30128.m008990
Ricinus communis
30128.m008990
N
0.699
OS05G0132700
Oryza sativa
OS05G0132700
N
0.698
BGIOSGA010548
Oryza indica
BGIOSGA010548
N
0.696
Ciclev10023519m.g
Citrus clementina
Ciclev10023519m.g
N
0.696
Pm015551
Prunus mume
Pm015551
N
0.694
GLYMA0041S00310
Glycine max
GLYMA0041S00310
I
0.689
AMTR_s00087p00039380
Amborella trichopoda
AMTR_s00087p00039380
N
0.687
MDP0000413041
Malus domestica
MDP0000413041
N
0.685
PGSC0003DMG400004610
Solanum tuberosum
PGSC0003DMG400004610
N
0.680
LjSGA_064890.1.1
Lotus japonicus
LjSGA_064890.1.1
N
0.678
OS05G0350900
Oryza sativa
OS05G0350900
N
0.675
mg021480m
Mimulus guttatus
mg021480m
N
0.675
OPUNC01G25350
Oryza punctata
OPUNC01G25350
N
0.670
Cucsa.051050
Cucumis sativus
Cucsa.051050
I
0.670
GLYMA14G10483
Glycine max
GLYMA14G10483
I
0.668
Gorai.001G024300
Gossypium raimondii
Gorai.001G024300
I
0.668
SapurV1A.0890s0050
Salix purpurea
SapurV1A.0890s0050
I
0.668
SapurV1A.3377s0010
Salix purpurea
SapurV1A.3377s0010
I
0.668
MDP0000158409
Malus domestica
MDP0000158409
N
0.667
PK15577.1
Cannabis sativa
PK15577.1
N
0.667
MYB60
Arabidopsis thaliana
AT1G08810
D
0.664
OLONG_025203
Oryza longistaminata
OLONG_025203
N
0.664
Traes_6AL_C0A2B4F041
Triticum aestivum
Traes_6AL_C0A2B4F041
N
0.664
orange1.1g019307m.g
Citrus sinensis
orange1.1g019307m.g
I
0.664
SapurV1A.0006s0790
Salix purpurea
SapurV1A.0006s0790
I
0.664
SapurV1A.0021s0930
Salix purpurea
SapurV1A.0021s0930
I
0.664
gene24516-v1.0-hybrid
Fragaria vesca
gene24516-v1.0-hybrid
N
0.662
SapurV1A.1328s0010
Salix purpurea
SapurV1A.1328s0010
N
0.578