CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Si022959m.g
(
Setaria italica
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Si022959m.g
T279834_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK28565.1
M02357_2.00
Cannabis sativa
TAACBGTY
RACVGTTA
PBM
Weirauch et al.(2014)
pTH9653
0.679
0.796
AtMYB70
M01071_2.00
Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH8588
0.663
0.774
AtMYB70
M07048_2.00
Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR
Dap-seq
OMalley et al.(2016)
MYB70_col_a
0.663
0.774
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Si022959m
Myb
19
65
KGSWSPEEDAQLTRLVEQHGPHRWSLISAAIPGRSGKSCRLRWCNQL
Si022959m
Myb
71
116
HRAFTAHEDAIILGAHARYGNKWATIARLLPGRTDNSIKNHWNSNL
Links
Other
Myb/SANT
family TFs
Other
Setaria italica
TFs
90 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GRMZM2G369799
Zea mays
GRMZM2G369799
I
0.818
Pavir.Ca02945
Panicum virgatum
Pavir.Ca02945
I
0.818
Pavir.Cb00156
Panicum virgatum
Pavir.Cb00156
I
0.818
OPUNC01G44800
Oryza punctata
OPUNC01G44800
N
0.793
BGIOSGA000003
Oryza indica
BGIOSGA000003
N
0.789
OBART01G45880
Oryza barthii
OBART01G45880
N
0.789
OGLUM01G50230
Oryza glumaepatula
OGLUM01G50230
N
0.789
ONIVA01G52120
Oryza nivara
ONIVA01G52120
N
0.789
ORGLA01G0396300
Oryza glaberrima
ORGLA01G0396300
N
0.789
ORUFI01G49370
Oryza rufipogon
ORUFI01G49370
N
0.789
OS01G0977300
Oryza sativa
OS01G0977300
N
0.789
Sb0088s002210
Sorghum bicolor
Sb0088s002210
N
0.783
OB01G55080
Oryza brachyantha
OB01G55080
N
0.782
OLONG_011153
Oryza longistaminata
OLONG_011153
N
0.766
Traes_4BL_545A5716E
Triticum aestivum
Traes_4BL_545A5716E
I
0.740
Traes_4DL_D41CB81EA
Triticum aestivum
Traes_4DL_D41CB81EA
I
0.740
Traes_4AS_A79A68739
Triticum aestivum
Traes_4AS_A79A68739
N
0.723
Gorai.012G078200
Gossypium raimondii
Gorai.012G078200
I
0.717
PRUPE_ppa017892mg
Prunus persica
PRUPE_ppa017892mg
I
0.706
Pm018951
Prunus mume
Pm018951
I
0.706
Ciclev10032317m.g
Citrus clementina
Ciclev10032317m.g
I
0.706
orange1.1g046570m.g
Citrus sinensis
orange1.1g046570m.g
I
0.706
chr2.CM0002.110.nc
Lotus japonicus
chr2.CM0002.110.nc
I
0.705
MDP0000298689
Malus domestica
MDP0000298689
I
0.704
LPERR01G40230
Leersia perrieri
LPERR01G40230
I
0.703
POPTR_0008s07100
Populus trichocarpa
POPTR_0008s07100
I
0.699
29814.m000736
Ricinus communis
29814.m000736
I
0.699
cassava41257.m1
Manihot esculenta
cassava41257.m1
I
0.699
SapurV1A.0650s0070
Salix purpurea
SapurV1A.0650s0070
I
0.699
GSMUA_AchrUn_randomG01280_001
Musa acuminata
GSMUA_AchrUn_randomG01280_001
I
0.697
Aquca_045_00169
Aquilegia coerulea
Aquca_045_00169
I
0.697
Lus10040940.g
Linum usitatissimum
Lus10040940.g
I
0.695
Lus10028979.g
Linum usitatissimum
Lus10028979.g
I
0.694
Cucsa.368410
Cucumis sativus
Cucsa.368410
I
0.687
Eucgr.H02226
Eucalyptus grandis
Eucgr.H02226
I
0.686
Lus10007503.g
Linum usitatissimum
Lus10007503.g
I
0.685
Lus10010055.g
Linum usitatissimum
Lus10010055.g
I
0.684
Lus10010238.g
Linum usitatissimum
Lus10010238.g
I
0.684
Cla004431
Citrullus lanatus
Cla004431
I
0.682
mgf020432m
Mimulus guttatus
mgf020432m
I
0.682
Thhalv10000438m.g
Eutrema salsugineum
Thhalv10000438m.g
I
0.682
TCM_042474
Theobroma cacao
TCM_042474
I
0.680
Ca_12468
Cicer arietinum
Ca_12468
I
0.680
GLYMA11G05550
Glycine max
GLYMA11G05550
I
0.679
GSMUA_Achr1G09750_001
Musa acuminata
GSMUA_Achr1G09750_001
I
0.679
evm.TU.supercontig_6.98
Carica papaya
evm.TU.supercontig_6.98
I
0.679
Lus10010260.g
Linum usitatissimum
Lus10010260.g
I
0.679
PK28565.1
Cannabis sativa
PK28565.1
D
0.679
chr2.CM0250.240.nd
Lotus japonicus
chr2.CM0250.240.nd
I
0.679
SapurV1A.0708s0130
Salix purpurea
SapurV1A.0708s0130
I
0.675
Bo1g004900
Brassica oleracea
Bo1g004900
I
0.674
Bra011749
Brassica rapa
Bra011749
I
0.674
AMTR_s00006p00225600
Amborella trichopoda
AMTR_s00006p00225600
I
0.673
GSMUA_Achr4G09450_001
Musa acuminata
GSMUA_Achr4G09450_001
I
0.671
VIT_18s0001g09850
Vitis vinifera
VIT_18s0001g09850
I
0.671
gene24027-v1.0-hybrid
Fragaria vesca
gene24027-v1.0-hybrid
I
0.671
gene21001-v1.0-hybrid
Fragaria vesca
gene21001-v1.0-hybrid
I
0.669
MTR_4g094982
Medicago truncatula
MTR_4g094982
I
0.668
VIT_13s0067g01360
Vitis vinifera
VIT_13s0067g01360
I
0.664
AtMYB70
Arabidopsis thaliana
AT2G23290
D
0.663
AtMYB70
Arabidopsis lyrata
fgenesh2_kg.4__260__AT2G23290.1
I
0.663
POPTR_0002s12410
Populus trichocarpa
POPTR_0002s12410
I
0.663
POPTR_0014s02260
Populus trichocarpa
POPTR_0014s02260
I
0.663
Bostr.27895s0157
Boechera stricta
Bostr.27895s0157
I
0.663
Carubv10023692m.g
Capsella rubella
Carubv10023692m.g
I
0.663
SapurV1A.0167s0310
Salix purpurea
SapurV1A.0167s0310
I
0.663
SapurV1A.0919s0160
Salix purpurea
SapurV1A.0919s0160
I
0.663
SapurV1A.1934s0020
Salix purpurea
SapurV1A.1934s0020
I
0.663
GLYMA01G39740
Glycine max
GLYMA01G39740
I
0.662
GLYMA05G21220
Glycine max
GLYMA05G21220
I
0.662
MTR_5g016510
Medicago truncatula
MTR_5g016510
I
0.662
PGSC0003DMG400024983
Solanum tuberosum
PGSC0003DMG400024983
I
0.662
POPTR_0005s18620
Populus trichocarpa
POPTR_0005s18620
I
0.662
PRUPE_ppa008450mg
Prunus persica
PRUPE_ppa008450mg
I
0.662
Solyc02g092930.1
Solanum lycopersicum
Solyc02g092930.1
I
0.662
TCM_000696
Theobroma cacao
TCM_000696
I
0.662
VIT_07s0129g01050
Vitis vinifera
VIT_07s0129g01050
I
0.662
Ca_02182
Cicer arietinum
Ca_02182
I
0.662
29970.m000987
Ricinus communis
29970.m000987
I
0.662
cassava2215.valid.m1
Manihot esculenta
cassava2215.valid.m1
I
0.662
cassava43120.valid.m1
Manihot esculenta
cassava43120.valid.m1
I
0.662
Ciclev10026107m.g
Citrus clementina
Ciclev10026107m.g
I
0.662
Gorai.007G055600
Gossypium raimondii
Gorai.007G055600
I
0.662
Gorai.007G218100
Gossypium raimondii
Gorai.007G218100
I
0.662
Lus10030336.g
Linum usitatissimum
Lus10030336.g
I
0.662
MDP0000196986
Malus domestica
MDP0000196986
I
0.662
MDP0000232454
Malus domestica
MDP0000232454
I
0.662
orange1.1g021071m.g
Citrus sinensis
orange1.1g021071m.g
I
0.662
PK01153.1
Cannabis sativa
PK01153.1
I
0.662
CM0528.210.nd
Lotus japonicus
CM0528.210.nd
I
0.662