Solyc12g017370.1 (Solanum lycopersicum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Solyc12g017370.1 T280303_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G24120
M00729_2.00 		Arabidopsis thaliana
NNKATDCBNN
NNVGHATMNN		 PBM
Chang et al.(2013)
pTH7086 		0.857 0.957
UNE16
M01270_2.00 		Arabidopsis thaliana
NWKATTCBNN
NNVGAATMWN		 PBM
Lambert et al.(2019)
pTH9967 		0.857 0.957
AT3G24120
M07085_2.00 		Arabidopsis thaliana
HAKATTCB
VGAATMTD		 Dap-seq
OMalley et al.(2016)
At3g24120_col_a 		0.857 0.957
AT3G24120
M07086_2.00 		Arabidopsis thaliana
NDRAAKATTCBHHN
NDDVGAATMTTYHN		 Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a 		0.857 0.957
PHL12
M01077_2.00 		Arabidopsis thaliana
NWKATTCBNN
NNVGAATMWN		 PBM
Sullivan et al.(2014)
pTH7098 		0.815 0.957
PHL12
M07079_2.00 		Arabidopsis thaliana
RGAATATTCYYTWN
NWARRGAATATTCY		 Dap-seq
OMalley et al.(2016)
At3g12730_col_a 		0.815 0.957
PHL12
M07080_2.00 		Arabidopsis thaliana
NNRAAKATTCBHHN
NDDVGAATMTTYNN		 Dap-seq
OMalley et al.(2016)
At3g12730_colamp_a 		0.815 0.957
MYR1
M02309_2.00 		Arabidopsis thaliana
NKATNCBNNN
NNNVGNATMN		 PBM
Weirauch et al.(2014)
pTH8859 		0.813 0.830
MYR2
M02294_2.00 		Arabidopsis thaliana
NKATDCBNN
NNVGHATMN		 PBM
Weirauch et al.(2014)
pTH7097 		0.807 0.809
MYR2
M07063_2.00 		Arabidopsis thaliana
NNDAAKATTCYHHN
NDDRGAATMTTHNN		 Dap-seq
OMalley et al.(2016)
At3g04030_col_a 		0.807 0.809
MYR2
M07064_2.00 		Arabidopsis thaliana
VRAAKATTCBHWNNN
NNNWDVGAATMTTYB		 Dap-seq
OMalley et al.(2016)
At3g04030_colamp_a 		0.807 0.809
PHL7
M02292_2.00 		Arabidopsis thaliana
NWGATDCBNN
NNVGHATCWN		 PBM
Weirauch et al.(2014)
pTH7253 		0.790 0.830
PK10342.1
M02351_2.00 		Cannabis sativa
WAGATKCS
SGMATCTW		 PBM
Weirauch et al.(2014)
pTH9489 		0.790 0.830
PHL7
M07040_2.00 		Arabidopsis thaliana
DRNAKATTCBNHNNN
NNNDNVGAATMTNYH		 Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a 		0.790 0.830
PHL7
M07041_2.00 		Arabidopsis thaliana
VGAATATTCBNHH
DDNVGAATATTCB		 Dap-seq
OMalley et al.(2016)
At2g01060_col 		0.790 0.830
PHL11
M07134_2.00 		Arabidopsis thaliana
NNRAAKATTCYHHN
NDDRGAATMTTYNN		 Dap-seq
OMalley et al.(2016)
AT5G45580_col_a 		0.738 0.745
PHL11
M07135_2.00 		Arabidopsis thaliana
NRAAKATTCYHHNN
NNDDRGAATMTTYN		 Dap-seq
OMalley et al.(2016)
AT5G45580_colamp_a 		0.738 0.745
Q5IWM2_WHEAT
M11059_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB80_01 		0.718 0.723
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc12g017370.1.1 Myb 34 85

Links

Other Myb/SANT family TFs
Other Solanum lycopersicum TFs

798 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
E(spl)m3-HLH Drosophila melanogaster FBgn0002609 D
E(spl)mbeta-HLH Drosophila melanogaster FBgn0002733 D
E(spl)mgamma-HLH Drosophila melanogaster FBgn0002735 D
GA13073 Drosophila pseudoobscura FBgn0073111 I
GA20996 Drosophila pseudoobscura FBgn0080985 I
GA21008 Drosophila pseudoobscura FBgn0080997 I
HLHmgamma Drosophila yakuba FBgn0082705 I
HLHmbeta Drosophila yakuba FBgn0082707 I
HLHm3 Drosophila simulans FBgn0082736 I
HLHmgamma Drosophila simulans FBgn0082737 I
HLHmbeta Drosophila simulans FBgn0082739 I
GF16796 Drosophila ananassae FBgn0093817 I
GF16799 Drosophila ananassae FBgn0093820 I
GF18225 Drosophila ananassae FBgn0095243 I
GG11450 Drosophila erecta FBgn0103749 I
GG11454 Drosophila erecta FBgn0103753 I
GG12207 Drosophila erecta FBgn0104499 I
GH18148 Drosophila grimshawi FBgn0125616 I
GH19452 Drosophila grimshawi FBgn0126917 I
GH19456 Drosophila grimshawi FBgn0126921 I
GI22910 Drosophila mojavensis FBgn0145637 I
GI24686 Drosophila mojavensis FBgn0147408 I
GI24690 Drosophila mojavensis FBgn0147412 I
GL21815 Drosophila persimilis FBgn0159408 I
GL21819 Drosophila persimilis FBgn0159412 I
GL22021 Drosophila persimilis FBgn0159614 I
GM10206 Drosophila sechellia FBgn0165157 I
GM10294 Drosophila sechellia FBgn0165245 I
GJ23323 Drosophila virilis FBgn0210424 I
GJ23903 Drosophila virilis FBgn0210997 I
GJ23906 Drosophila virilis FBgn0210999 I
GK12809 Drosophila willistoni FBgn0214818 I
GK14455 Drosophila willistoni FBgn0216461 I
GK14458 Drosophila willistoni FBgn0216464 I
GE23647 Drosophila yakuba FBgn0240814 I
LCUP008810 Lucilia cuprina LCUP008810 I
LCUP008813 Lucilia cuprina LCUP008813 I
MDOA002768 Musca domestica MDOA002768 I
MDOA006673 Musca domestica MDOA006673 I
MDOA014216 Musca domestica MDOA014216 I
MESCA005144 Megaselia scalaris MESCA005144 I