CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Traes_2BL_EED456A17
(
Triticum aestivum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Traes_2BL_EED456A17
T280913_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NIGT1
M02328_2.00
Oryza sativa
NNKATHCNNN
NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH8646
0.839
0.872
HHO3
M02289_2.00
Arabidopsis thaliana
NWGATWCBNN
NNVGWATCWN
PBM
Weirauch et al.(2014)
pTH7278
0.831
0.872
HHO3
M07016_2.00
Arabidopsis thaliana
NNDHNNAAKATTCY
RGAATMTTNNDHNN
Dap-seq
OMalley et al.(2016)
At1g25550_colamp_a
0.831
0.872
HHO3
M07017_2.00
Arabidopsis thaliana
HNNAAKATTCY
RGAATMTTNND
Dap-seq
OMalley et al.(2016)
At1g25550_col
0.831
0.872
HHO2
M02290_2.00
Arabidopsis thaliana
NNKATHCNNN
NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH7115
0.813
0.851
HHO2
M07029_2.00
Arabidopsis thaliana
AKATTCY
RGAATMT
Dap-seq
OMalley et al.(2016)
At1g68670_colamp_a
0.813
0.851
HHO2
M07030_2.00
Arabidopsis thaliana
RDATYNNAGATTC
GAATCTNNRATHY
Dap-seq
OMalley et al.(2016)
At1g68670_col
0.813
0.851
HHO6
M07024_2.00
Arabidopsis thaliana
GAATCTNNDAT
ATHNNAGATTC
Dap-seq
OMalley et al.(2016)
AT1G49560_col_a
0.803
0.872
HHO6
M07025_2.00
Arabidopsis thaliana
DGAATCTHNGATHCN
NGDATCNDAGATTCH
Dap-seq
OMalley et al.(2016)
AT1G49560_colamp_a
0.803
0.872
PK19779.1
M02354_2.00
Cannabis sativa
NNKATNCNNN
NNNGNATMNN
PBM
Weirauch et al.(2014)
pTH9610
0.790
0.851
EFM
M07044_2.00
Arabidopsis thaliana
NNGAATATTCY
RGAATATTCNN
Dap-seq
OMalley et al.(2016)
At2g03500_col_a
0.785
0.872
EFM
M07045_2.00
Arabidopsis thaliana
RGAATCHWAGATTC
GAATCTWDGATTCY
Dap-seq
OMalley et al.(2016)
At2g03500_colamp_a
0.785
0.872
PK14402.1
M02352_2.00
Cannabis sativa
NDWGATTCSNN
NNSGAATCWHN
PBM
Weirauch et al.(2014)
pTH9491
0.750
0.872
HRS1
M02284_2.00
Arabidopsis thaliana
AGATTCYN
NRGAATCT
PBM
Weirauch et al.(2014)
pTH7118
0.742
0.830
HRS1
M01068_2.00
Arabidopsis thaliana
NAGATTCBNN
NNVGAATCTN
PBM
Sullivan et al.(2014)
pTH7648
0.742
0.830
HRS1
M07004_2.00
Arabidopsis thaliana
NDDWWVNAAKATTCY
RGAATMTTNBWWHHN
Dap-seq
OMalley et al.(2016)
At1g13300_col_a
0.742
0.830
HHO5
M07112_2.00
Arabidopsis thaliana
HNDAAGATTCH
DGAATCTTHND
Dap-seq
OMalley et al.(2016)
AT4G37180_col_a
0.727
0.872
HHO5
M07113_2.00
Arabidopsis thaliana
NNDAAGATTCY
RGAATCTTHNN
Dap-seq
OMalley et al.(2016)
AT4G37180_colamp_a
0.727
0.872
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Traes_2BL_EED456A17.1
Myb
281
332
RRCWSPELHRQFVTALHQLGGPQVATPKQIRELMKVDGLTNDEVKSHLQKYR
Links
Other
Myb/SANT
family TFs
Other
Triticum aestivum
TFs
362 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29929.m004704
Ricinus communis
29929.m004704
D
AMTR_s00005p00185670
Amborella trichopoda
AMTR_s00005p00185670
I
AMTR_s00055p00209070
Amborella trichopoda
AMTR_s00055p00209070
I
Aquca_011_00297
Aquilegia coerulea
Aquca_011_00297
I
Aquca_123_00031
Aquilegia coerulea
Aquca_123_00031
I
GT-1
Arabidopsis thaliana
AT1G13450
D
GT-4
Arabidopsis thaliana
AT3G25990
D
Bo2g138840
Brassica oleracea
Bo2g138840
I
Bo5g017510
Brassica oleracea
Bo5g017510
I
Bo8g107400
Brassica oleracea
Bo8g107400
I
Bostr.0556s0275
Boechera stricta
Bostr.0556s0275
I
Bostr.13671s0104
Boechera stricta
Bostr.13671s0104
I
Bra019721
Brassica rapa
Bra019721
I
Bra036354
Brassica rapa
Bra036354
I
Cagra.3501s0157
Capsella grandiflora
Cagra.3501s0157
I
Cagra.6197s0012
Capsella grandiflora
Cagra.6197s0012
I
Carubv10009313m.g
Capsella rubella
Carubv10009313m.g
I
Carubv10017413m.g
Capsella rubella
Carubv10017413m.g
I
cassava11841.valid.m1
Manihot esculenta
cassava11841.valid.m1
I
cassava13991.valid.m1
Manihot esculenta
cassava13991.valid.m1
D
Ca_11315
Cicer arietinum
Ca_11315
I
Ciclev10031750m.g
Citrus clementina
Ciclev10031750m.g
I
Cla023054
Citrullus lanatus
Cla023054
I
Cucsa.394820
Cucumis sativus
Cucsa.394820
I
Eucgr.B03456
Eucalyptus grandis
Eucgr.B03456
I
Eucgr.J02286
Eucalyptus grandis
Eucgr.J02286
I
evm.TU.supercontig_130.35
Carica papaya
evm.TU.supercontig_130.35
I
evm.TU.supercontig_1453.1
Carica papaya
evm.TU.supercontig_1453.1
I
fgenesh2_kg.5__353__AT3G25990.1
Arabidopsis lyrata
fgenesh2_kg.5__353__AT3G25990.1
D
GLYMA11G37390
Glycine max
GLYMA11G37390
D
GLYMA18G01360
Glycine max
GLYMA18G01360
I
Gorai.008G163200
Gossypium raimondii
Gorai.008G163200
I
Gorai.009G333800
Gossypium raimondii
Gorai.009G333800
I
GRMZM2G047370
Zea mays
GRMZM2G047370
I
GSMUA_Achr3G19370_001
Musa acuminata
GSMUA_Achr3G19370_001
I
GSMUA_Achr5G17240_001
Musa acuminata
GSMUA_Achr5G17240_001
I
LjT04G17.70.nc
Lotus japonicus
LjT04G17.70.nc
I
Lus10015824.g
Linum usitatissimum
Lus10015824.g
I
Lus10036978.g
Linum usitatissimum
Lus10036978.g
I
MDP0000164819
Malus domestica
MDP0000164819
D
MDP0000275412
Malus domestica
MDP0000275412
I
mgf016368m
Mimulus guttatus
mgf016368m
I
MLOC_64014
Hordeum vulgare
MLOC_64014
I
MTR_3g085960
Medicago truncatula
MTR_3g085960
D
OB04G23970
Oryza brachyantha
OB04G23970
I
orange1.1g015940m.g
Citrus sinensis
orange1.1g015940m.g
I
OS04G0486400
Oryza sativa
OS04G0486400
D
Pavir.Ga01561
Panicum virgatum
Pavir.Ga01561
I
PDK_20s1345831g002
Phoenix dactylifera
PDK_20s1345831g002
I
PK20543.1
Cannabis sativa
PK20543.1
D
Pm006885
Prunus mume
Pm006885
I
Pm016214
Prunus mume
Pm016214
I
POPTR_0008s17980
Populus trichocarpa
POPTR_0008s17980
I
POPTR_0010s06510
Populus trichocarpa
POPTR_0010s06510
I
PRUPE_ppa005942mg
Prunus persica
PRUPE_ppa005942mg
I
PRUPE_ppa009404mg
Prunus persica
PRUPE_ppa009404mg
I
SapurV1A.0206s0170
Salix purpurea
SapurV1A.0206s0170
I
SapurV1A.1719s0020
Salix purpurea
SapurV1A.1719s0020
I
GT-1
Arabidopsis lyrata
scaffold_101505.1
D
Si010147m.g
Setaria italica
Si010147m.g
I
Si036121m.g
Setaria italica
Si036121m.g
I
Solyc12g077540.1
Solanum lycopersicum
Solyc12g077540.1
I
TCM_010751
Theobroma cacao
TCM_010751
I
Thhalv10004359m.g
Eutrema salsugineum
Thhalv10004359m.g
I
Thhalv10007959m.g
Eutrema salsugineum
Thhalv10007959m.g
I
VIT_01s0010g02420
Vitis vinifera
VIT_01s0010g02420
I
VIT_14s0171g00450
Vitis vinifera
VIT_14s0171g00450
I
VIT_17s0000g10420
Vitis vinifera
VIT_17s0000g10420
D