CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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VIT_11s0016g04600
(
Vitis vinifera
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
VIT_11s0016g04600
T282008_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
EFM
M07044_2.00
Arabidopsis thaliana
NNGAATATTCY
RGAATATTCNN
Dap-seq
OMalley et al.(2016)
At2g03500_col_a
0.909
0.979
EFM
M07045_2.00
Arabidopsis thaliana
RGAATCHWAGATTC
GAATCTWDGATTCY
Dap-seq
OMalley et al.(2016)
At2g03500_colamp_a
0.909
0.979
NIGT1
M02328_2.00
Oryza sativa
NNKATHCNNN
NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH8646
0.843
0.894
HHO3
M02289_2.00
Arabidopsis thaliana
NWGATWCBNN
NNVGWATCWN
PBM
Weirauch et al.(2014)
pTH7278
0.835
0.894
HHO3
M07016_2.00
Arabidopsis thaliana
NNDHNNAAKATTCY
RGAATMTTNNDHNN
Dap-seq
OMalley et al.(2016)
At1g25550_colamp_a
0.835
0.894
HHO3
M07017_2.00
Arabidopsis thaliana
HNNAAKATTCY
RGAATMTTNND
Dap-seq
OMalley et al.(2016)
At1g25550_col
0.835
0.894
HHO2
M02290_2.00
Arabidopsis thaliana
NNKATHCNNN
NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH7115
0.817
0.894
HHO2
M07029_2.00
Arabidopsis thaliana
AKATTCY
RGAATMT
Dap-seq
OMalley et al.(2016)
At1g68670_colamp_a
0.817
0.894
HHO2
M07030_2.00
Arabidopsis thaliana
RDATYNNAGATTC
GAATCTNNRATHY
Dap-seq
OMalley et al.(2016)
At1g68670_col
0.817
0.894
PK19779.1
M02354_2.00
Cannabis sativa
NNKATNCNNN
NNNGNATMNN
PBM
Weirauch et al.(2014)
pTH9610
0.794
0.894
HHO6
M07024_2.00
Arabidopsis thaliana
GAATCTNNDAT
ATHNNAGATTC
Dap-seq
OMalley et al.(2016)
AT1G49560_col_a
0.776
0.851
HHO6
M07025_2.00
Arabidopsis thaliana
DGAATCTHNGATHCN
NGDATCNDAGATTCH
Dap-seq
OMalley et al.(2016)
AT1G49560_colamp_a
0.776
0.851
HRS1
M02284_2.00
Arabidopsis thaliana
AGATTCYN
NRGAATCT
PBM
Weirauch et al.(2014)
pTH7118
0.775
0.872
HRS1
M01068_2.00
Arabidopsis thaliana
NAGATTCBNN
NNVGAATCTN
PBM
Sullivan et al.(2014)
pTH7648
0.775
0.872
HRS1
M07004_2.00
Arabidopsis thaliana
NDDWWVNAAKATTCY
RGAATMTTNBWWHHN
Dap-seq
OMalley et al.(2016)
At1g13300_col_a
0.775
0.872
PK14402.1
M02352_2.00
Cannabis sativa
NDWGATTCSNN
NNSGAATCWHN
PBM
Weirauch et al.(2014)
pTH9491
0.754
0.851
HHO5
M07112_2.00
Arabidopsis thaliana
HNDAAGATTCH
DGAATCTTHND
Dap-seq
OMalley et al.(2016)
AT4G37180_col_a
0.711
0.809
HHO5
M07113_2.00
Arabidopsis thaliana
NNDAAGATTCY
RGAATCTTHNN
Dap-seq
OMalley et al.(2016)
AT4G37180_colamp_a
0.711
0.809
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
VIT_11s0016g04600.t01
Myb
251
302
RRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYR
Links
Other
Myb/SANT
family TFs
Other
Vitis vinifera
TFs
366 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30005.m001261
Ricinus communis
30005.m001261
N
Aquca_108_00051
Aquilegia coerulea
Aquca_108_00051
N
BGIOSGA014805
Oryza indica
BGIOSGA014805
N
cassava24109.valid.m1
Manihot esculenta
cassava24109.valid.m1
N
Ciclev10021850m.g
Citrus clementina
Ciclev10021850m.g
N
Cla012999
Citrullus lanatus
Cla012999
N
F775_32546
Aegilops tauschii
F775_32546
N
Gorai.007G162200
Gossypium raimondii
Gorai.007G162200
N
Gorai.011G138900
Gossypium raimondii
Gorai.011G138900
N
GRMZM2G053557
Zea mays
GRMZM2G053557
N
GSMUA_Achr3G19260_001
Musa acuminata
GSMUA_Achr3G19260_001
N
GSMUA_Achr9G08210_001
Musa acuminata
GSMUA_Achr9G08210_001
N
LPERR04G13890
Leersia perrieri
LPERR04G13890
N
Lus10025581.g
Linum usitatissimum
Lus10025581.g
N
Lus10025582.g
Linum usitatissimum
Lus10025582.g
N
Lus10027045.g
Linum usitatissimum
Lus10027045.g
N
MDP0000184998
Malus domestica
MDP0000184998
N
MDP0000716430
Malus domestica
MDP0000716430
N
OBART04G17310
Oryza barthii
OBART04G17310
N
OGLUM04G17350
Oryza glumaepatula
OGLUM04G17350
N
OLONG_009317
Oryza longistaminata
OLONG_009317
N
OMERI04G14610
Oryza meridionalis
OMERI04G14610
N
ONIVA04G15620
Oryza nivara
ONIVA04G15620
N
OPUNC04G15120
Oryza punctata
OPUNC04G15120
N
orange1.1g024388m.g
Citrus sinensis
orange1.1g024388m.g
N
orange1.1g025458m.g
Citrus sinensis
orange1.1g025458m.g
N
ORGLA04G0144300
Oryza glaberrima
ORGLA04G0144300
N
ORUFI04G18740
Oryza rufipogon
ORUFI04G18740
N
Pavir.Ga01503
Panicum virgatum
Pavir.Ga01503
N
Pm007242
Prunus mume
Pm007242
N
POPTR_0014s17210
Populus trichocarpa
POPTR_0014s17210
N
PRUPE_ppa010592mg
Prunus persica
PRUPE_ppa010592mg
N
Sb06g021360
Sorghum bicolor
Sb06g021360
N
Si010917m.g
Setaria italica
Si010917m.g
N
TCM_002550
Theobroma cacao
TCM_002550
N
TCM_019960
Theobroma cacao
TCM_019960
N
TCM_019968
Theobroma cacao
TCM_019968
N
Traes_2AL_6990211D0
Triticum aestivum
Traes_2AL_6990211D0
N
Traes_2BL_7B5109B55
Triticum aestivum
Traes_2BL_7B5109B55
N
Traes_2DL_B72450387
Triticum aestivum
Traes_2DL_B72450387
N