CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AtMYB40
(
Vitis vinifera
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
VIT_14s0219g00050
T282058_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AtMYB40
M07126_2.00
Arabidopsis thaliana
YYYACCWAMYHHH
DDDRKTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB40_col_a
0.744
0.817
MYB43
M07127_2.00
Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB43_col_a
0.708
0.785
PK21166.1
M01281_2.00
Cannabis sativa
HACCWAMY
RKTWGGTD
PBM
Lambert et al.(2019)
pTH11255
0.667
0.774
MYB99
M07151_2.00
Arabidopsis thaliana
NYYYACCWAMYHH
DDRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB99_col_a
0.663
0.677
MYB99
M07152_2.00
Arabidopsis thaliana
YHYACCTAMYH
DRKTAGGTRDR
Dap-seq
OMalley et al.(2016)
MYB99_colamp_a
0.663
0.677
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
VIT_14s0219g00050.t01
Myb
14
61
RGPWTIEEDHKLMSFILNNGIQCWRMVPKLAGLLRCGKSCRLRWINYL
VIT_14s0219g00050.t01
Myb
67
112
RGALSEVEENQIIQLHSRLGNRWSKIASHFPGRTDNEIKNHWNTRI
Links
Other
Myb/SANT
family TFs
Other
Vitis vinifera
TFs
221 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
mgf018940m
Mimulus guttatus
mgf018940m
I
0.909
Eucgr.J02279
Eucalyptus grandis
Eucgr.J02279
I
0.898
evm.TU.supercontig_1097.3
Carica papaya
evm.TU.supercontig_1097.3
I
0.893
TCM_017051
Theobroma cacao
TCM_017051
I
0.892
Gorai.006G037500
Gossypium raimondii
Gorai.006G037500
I
0.892
cassava17364.m1
Manihot esculenta
cassava17364.m1
I
0.886
PGSC0003DMG400012648
Solanum tuberosum
PGSC0003DMG400012648
I
0.882
Solyc02g093740.2
Solanum lycopersicum
Solyc02g093740.2
I
0.882
Lus10032117.g
Linum usitatissimum
Lus10032117.g
I
0.882
cassava3745.m1
Manihot esculenta
cassava3745.m1
I
0.879
29929.m004749
Ricinus communis
29929.m004749
I
0.877
Eucgr.I01698
Eucalyptus grandis
Eucgr.I01698
I
0.874
POPTR_0001s36220
Populus trichocarpa
POPTR_0001s36220
I
0.873
Aquca_011_00323
Aquilegia coerulea
Aquca_011_00323
I
0.873
PRUPE_ppa026877mg
Prunus persica
PRUPE_ppa026877mg
I
0.871
gene28021-v1.0-hybrid
Fragaria vesca
gene28021-v1.0-hybrid
I
0.871
Ca_19393
Cicer arietinum
Ca_19393
I
0.860
Lus10014569.g
Linum usitatissimum
Lus10014569.g
I
0.858
Pm015564
Prunus mume
Pm015564
I
0.856
Ciclev10017764m.g
Citrus clementina
Ciclev10017764m.g
I
0.852
MDP0000241111
Malus domestica
MDP0000241111
I
0.852
MDP0000303239
Malus domestica
MDP0000303239
I
0.852
Cla004104
Citrullus lanatus
Cla004104
I
0.850
Cucsa.156340
Cucumis sativus
Cucsa.156340
I
0.850
GLYMA16G06900
Glycine max
GLYMA16G06900
I
0.847
Gorai.007G074500
Gossypium raimondii
Gorai.007G074500
I
0.846
SapurV1A.0136s0070
Salix purpurea
SapurV1A.0136s0070
I
0.846
Solyc05g014290.2
Solanum lycopersicum
Solyc05g014290.2
I
0.836
GLYMA19G07830
Glycine max
GLYMA19G07830
I
0.833
cassava15064.m1
Manihot esculenta
cassava15064.m1
I
0.830
Gorai.001G268000
Gossypium raimondii
Gorai.001G268000
I
0.822
GLYMA05G06410
Glycine max
GLYMA05G06410
I
0.818
Aquca_011_00322
Aquilegia coerulea
Aquca_011_00322
I
0.818
PGSC0003DMG400011976
Solanum tuberosum
PGSC0003DMG400011976
I
0.811
GSMUA_Achr6G06800_001
Musa acuminata
GSMUA_Achr6G06800_001
I
0.804
mgf025004m
Mimulus guttatus
mgf025004m
I
0.790
SapurV1A.0206s0260
Salix purpurea
SapurV1A.0206s0260
I
0.786
AMTR_s00049p00074250
Amborella trichopoda
AMTR_s00049p00074250
I
0.781
GSMUA_AchrUn_randomG11880_001
Musa acuminata
GSMUA_AchrUn_randomG11880_001
N
0.777
AtMYB40
Populus trichocarpa
POPTR_0008s18110
I
0.765
Bo3g009730
Brassica oleracea
Bo3g009730
I
0.764
Bra006249
Brassica rapa
Bra006249
I
0.764
Bra008764
Brassica rapa
Bra008764
I
0.764
Bo9g166000
Brassica oleracea
Bo9g166000
I
0.755
AtMYB40
Arabidopsis thaliana
AT5G14340
D
0.744
Bostr.2902s0170
Boechera stricta
Bostr.2902s0170
I
0.744
Cagra.3166s0041
Capsella grandiflora
Cagra.3166s0041
I
0.744
Thhalv10014425m.g
Eutrema salsugineum
Thhalv10014425m.g
I
0.744
PGSC0003DMG400015668
Solanum tuberosum
PGSC0003DMG400015668
I
0.714
Solyc04g014470.2
Solanum lycopersicum
Solyc04g014470.2
I
0.714
Solyc11g011050.1
Solanum lycopersicum
Solyc11g011050.1
I
0.714
Bo4g101470
Brassica oleracea
Bo4g101470
I
0.712
MYB43
Arabidopsis thaliana
AT5G16600
D
0.708
MYB43
Arabidopsis lyrata
scaffold_601700.1
I
0.708
Bostr.2902s0397
Boechera stricta
Bostr.2902s0397
I
0.708
Cagra.0434s0026
Capsella grandiflora
Cagra.0434s0026
I
0.708
Carubv10001378m.g
Capsella rubella
Carubv10001378m.g
I
0.708
Pavir.Bb01873
Panicum virgatum
Pavir.Bb01873
I
0.703
Pavir.J21364
Panicum virgatum
Pavir.J21364
I
0.703
Aquca_013_00661
Aquilegia coerulea
Aquca_013_00661
I
0.701
MTR_4g102380
Medicago truncatula
MTR_4g102380
I
0.699
Ca_08722
Cicer arietinum
Ca_08722
I
0.699
PK08857.1
Cannabis sativa
PK08857.1
I
0.699
chr4.CM0126.370.nd
Lotus japonicus
chr4.CM0126.370.nd
I
0.699
GSMUA_Achr7G12520_001
Musa acuminata
GSMUA_Achr7G12520_001
I
0.697
Bo2g013190
Brassica oleracea
Bo2g013190
I
0.695
GLYMA05G03780
Glycine max
GLYMA05G03780
I
0.695
GLYMA17G14291
Glycine max
GLYMA17G14291
I
0.695
PGSC0003DMG400004780
Solanum tuberosum
PGSC0003DMG400004780
I
0.695
POPTR_0001s07830
Populus trichocarpa
POPTR_0001s07830
I
0.695
POPTR_0003s11360
Populus trichocarpa
POPTR_0003s11360
I
0.695
PRUPE_ppa021568mg
Prunus persica
PRUPE_ppa021568mg
I
0.695
Solyc08g079270.2
Solanum lycopersicum
Solyc08g079270.2
I
0.695
TCM_014956
Theobroma cacao
TCM_014956
I
0.695
TCM_016054
Theobroma cacao
TCM_016054
I
0.695
VIT_00s1241g00010
Vitis vinifera
VIT_00s1241g00010
I
0.695
VIT_16s0022g01210
Vitis vinifera
VIT_16s0022g01210
I
0.695
Cla003626
Citrullus lanatus
Cla003626
I
0.695
Cla011736
Citrullus lanatus
Cla011736
I
0.695
Pm023573
Prunus mume
Pm023573
I
0.695
30190.m011004
Ricinus communis
30190.m011004
I
0.695
cassava2058.valid.m1
Manihot esculenta
cassava2058.valid.m1
I
0.695
cassava33331.m1
Manihot esculenta
cassava33331.m1
I
0.695
cassava47045.m1
Manihot esculenta
cassava47045.m1
I
0.695
Cagra.14303s0002
Capsella grandiflora
Cagra.14303s0002
I
0.695
Carubv10003172m.g
Capsella rubella
Carubv10003172m.g
I
0.695
Ciclev10005666m.g
Citrus clementina
Ciclev10005666m.g
I
0.695
Ciclev10021695m.g
Citrus clementina
Ciclev10021695m.g
I
0.695
Eucgr.D02014
Eucalyptus grandis
Eucgr.D02014
I
0.695
evm.TU.supercontig_3.300
Carica papaya
evm.TU.supercontig_3.300
I
0.695
gene32268-v1.0-hybrid
Fragaria vesca
gene32268-v1.0-hybrid
I
0.695
Gorai.003G168100
Gossypium raimondii
Gorai.003G168100
I
0.695
Gorai.004G201900
Gossypium raimondii
Gorai.004G201900
I
0.695
Gorai.008G238800
Gossypium raimondii
Gorai.008G238800
I
0.695
Lus10027197.g
Linum usitatissimum
Lus10027197.g
I
0.695
Lus10038913.g
Linum usitatissimum
Lus10038913.g
I
0.695
MDP0000682032
Malus domestica
MDP0000682032
I
0.695
orange1.1g024441m.g
Citrus sinensis
orange1.1g024441m.g
I
0.695
orange1.1g024849m.g
Citrus sinensis
orange1.1g024849m.g
I
0.695
SapurV1A.0045s0090
Salix purpurea
SapurV1A.0045s0090
I
0.695
SapurV1A.0367s0020
Salix purpurea
SapurV1A.0367s0020
I
0.695
SapurV1A.0456s0310
Salix purpurea
SapurV1A.0456s0310
I
0.695
SapurV1A.0634s0020
Salix purpurea
SapurV1A.0634s0020
I
0.695
fgenesh1_pg.scaffold_420000003
Physcomitrella patens
fgenesh1_pg.scaffold_420000003
I
0.692
Bo9g163020
Brassica oleracea
Bo9g163020
I
0.691
Thhalv10014086m.g
Eutrema salsugineum
Thhalv10014086m.g
I
0.691
PDK_20s1306131g002
Phoenix dactylifera
PDK_20s1306131g002
I
0.691
Lus10004042.g
Linum usitatissimum
Lus10004042.g
I
0.689
Si031939m.g
Setaria italica
Si031939m.g
I
0.686
Pavir.Ba02150
Panicum virgatum
Pavir.Ba02150
I
0.686
PRUPE_ppa011549mg
Prunus persica
PRUPE_ppa011549mg
I
0.685
Pm019472
Prunus mume
Pm019472
I
0.685
GLYMA02G41180
Glycine max
GLYMA02G41180
I
0.684
GLYMA11G33620
Glycine max
GLYMA11G33620
I
0.684
GLYMA14G39530
Glycine max
GLYMA14G39530
I
0.684
GLYMA18G04580
Glycine max
GLYMA18G04580
I
0.684
MTR_3g065440
Medicago truncatula
MTR_3g065440
I
0.684
MTR_5g078140
Medicago truncatula
MTR_5g078140
I
0.684
POPTR_0004s08480
Populus trichocarpa
POPTR_0004s08480
I
0.684
POPTR_0017s02850
Populus trichocarpa
POPTR_0017s02850
I
0.684
PRUPE_ppa009966mg
Prunus persica
PRUPE_ppa009966mg
I
0.684
TCM_019116
Theobroma cacao
TCM_019116
I
0.684
Ca_13286
Cicer arietinum
Ca_13286
I
0.684
Pm013020
Prunus mume
Pm013020
I
0.684
cassava6251.valid.m1
Manihot esculenta
cassava6251.valid.m1
I
0.684
Cucsa.006170
Cucumis sativus
Cucsa.006170
I
0.684
Ciclev10012265m.g
Citrus clementina
Ciclev10012265m.g
I
0.684
Eucgr.F02864
Eucalyptus grandis
Eucgr.F02864
I
0.684
Eucgr.J01601
Eucalyptus grandis
Eucgr.J01601
I
0.684
Gorai.001G205300
Gossypium raimondii
Gorai.001G205300
I
0.684
Gorai.004G064100
Gossypium raimondii
Gorai.004G064100
I
0.684
Gorai.008G060100
Gossypium raimondii
Gorai.008G060100
I
0.684
orange1.1g021498m.g
Citrus sinensis
orange1.1g021498m.g
I
0.684
SapurV1A.0102s0470
Salix purpurea
SapurV1A.0102s0470
I
0.684
SapurV1A.0390s0060
Salix purpurea
SapurV1A.0390s0060
I
0.684
SapurV1A.1318s0060
Salix purpurea
SapurV1A.1318s0060
I
0.684
Gorai.006G064000
Gossypium raimondii
Gorai.006G064000
I
0.683
GSMUA_Achr4G19880_001
Musa acuminata
GSMUA_Achr4G19880_001
I
0.682
estExt_gwp_gw1.C_780109
Physcomitrella patens
estExt_gwp_gw1.C_780109
N
0.682
cassava21367.m1
Manihot esculenta
cassava21367.m1
I
0.681
cassava30009.valid.m1
Manihot esculenta
cassava30009.valid.m1
I
0.681
GSMUA_Achr9G15640_001
Musa acuminata
GSMUA_Achr9G15640_001
I
0.680
MDP0000787808
Malus domestica
MDP0000787808
I
0.679
GLYMA01G42050
Glycine max
GLYMA01G42050
I
0.678
GLYMA11G03300
Glycine max
GLYMA11G03300
I
0.678
GSMUA_Achr7G05680_001
Musa acuminata
GSMUA_Achr7G05680_001
I
0.678
POPTR_0015s14600
Populus trichocarpa
POPTR_0015s14600
I
0.678
Cucsa.302180
Cucumis sativus
Cucsa.302180
I
0.678
mgf017719m
Mimulus guttatus
mgf017719m
I
0.678
Bostr.25463s0081
Boechera stricta
Bostr.25463s0081
I
0.678
Lus10024589.g
Linum usitatissimum
Lus10024589.g
I
0.678
Lus10032226.g
Linum usitatissimum
Lus10032226.g
I
0.678
Si030711m.g
Setaria italica
Si030711m.g
I
0.677
Si032544m.g
Setaria italica
Si032544m.g
I
0.677
Cla009311
Citrullus lanatus
Cla009311
I
0.675
BGIOSGA030727
Oryza indica
BGIOSGA030727
I
0.673
BRADI4G29796
Brachypodium distachyon
BRADI4G29796
I
0.673
GRMZM2G169356
Zea mays
GRMZM2G169356
I
0.673
ORGLA09G0071400
Oryza glaberrima
ORGLA09G0071400
I
0.673
ORUFI09G10320
Oryza rufipogon
ORUFI09G10320
I
0.673
OS09G0401000
Oryza sativa
OS09G0401000
I
0.673
Pavir.Ba02148
Panicum virgatum
Pavir.Ba02148
I
0.673
Pavir.Ba02149
Panicum virgatum
Pavir.Ba02149
I
0.673
Pavir.Bb01872
Panicum virgatum
Pavir.Bb01872
I
0.673
Pavir.Da01229
Panicum virgatum
Pavir.Da01229
I
0.673
Bo6g099800
Brassica oleracea
Bo6g099800
I
0.670
Bra004155
Brassica rapa
Bra004155
I
0.670
BRADI3G36370
Brachypodium distachyon
BRADI3G36370
I
0.670
Bostr.26959s0295
Boechera stricta
Bostr.26959s0295
I
0.670
Cagra.1300s0004
Capsella grandiflora
Cagra.1300s0004
I
0.670
Carubv10020766m.g
Capsella rubella
Carubv10020766m.g
I
0.670
Lus10002296.g
Linum usitatissimum
Lus10002296.g
I
0.670
Lus10004043.g
Linum usitatissimum
Lus10004043.g
I
0.670
BGIOSGA029380
Oryza indica
BGIOSGA029380
I
0.668
OB09G24070
Oryza brachyantha
OB09G24070
I
0.668
OLONG_005336
Oryza longistaminata
OLONG_005336
I
0.668
ORGLA09G0137500
Oryza glaberrima
ORGLA09G0137500
I
0.668
OS09G0532900
Oryza sativa
OS09G0532900
I
0.668
Gorai.006G195700
Gossypium raimondii
Gorai.006G195700
I
0.668
MDP0000602739
Malus domestica
MDP0000602739
I
0.668
GRMZM2G106558
Zea mays
GRMZM2G106558
I
0.667
GSMUA_Achr5G23110_001
Musa acuminata
GSMUA_Achr5G23110_001
I
0.667
MYB20
Arabidopsis lyrata
scaffold_201335.1
I
0.667
MYB43
Vitis vinifera
VIT_14s0006g00450
I
0.667
Cucsa.375180
Cucumis sativus
Cucsa.375180
I
0.667
gene30520-v1.0-hybrid
Fragaria vesca
gene30520-v1.0-hybrid
I
0.667
Pavir.Fb01563
Panicum virgatum
Pavir.Fb01563
I
0.667
Thhalv10019852m.g
Eutrema salsugineum
Thhalv10019852m.g
I
0.667
PK21166.1
Cannabis sativa
PK21166.1
D
0.667
Bo3g165540
Brassica oleracea
Bo3g165540
I
0.665
F775_19511
Aegilops tauschii
F775_19511
I
0.665
GRMZM2G037650
Zea mays
GRMZM2G037650
I
0.665
GRMZM2G104551
Zea mays
GRMZM2G104551
I
0.665
GRMZM2G138427
Zea mays
GRMZM2G138427
I
0.665
POPTR_0012s14540
Populus trichocarpa
POPTR_0012s14540
I
0.665
Sb02g030900
Sorghum bicolor
Sb02g030900
I
0.665
Si030750m.g
Setaria italica
Si030750m.g
I
0.665
Traes_5BL_30D8E6BE2
Triticum aestivum
Traes_5BL_30D8E6BE2
I
0.665
Traes_5DL_0B2C5ADF6
Triticum aestivum
Traes_5DL_0B2C5ADF6
I
0.665
Cucsa.115620
Cucumis sativus
Cucsa.115620
I
0.665
Eucgr.K00153
Eucalyptus grandis
Eucgr.K00153
I
0.665
gene21264-v1.0-hybrid
Fragaria vesca
gene21264-v1.0-hybrid
I
0.665
Pavir.Ba01239
Panicum virgatum
Pavir.Ba01239
I
0.665
Pavir.Bb02654
Panicum virgatum
Pavir.Bb02654
I
0.665
Pavir.Fb02321
Panicum virgatum
Pavir.Fb02321
I
0.665
Pavir.J36915
Panicum virgatum
Pavir.J36915
I
0.665
OB09G16260
Oryza brachyantha
OB09G16260
I
0.664
Pavir.Fa00850
Panicum virgatum
Pavir.Fa00850
I
0.664
MYB99
Arabidopsis thaliana
AT5G62320
D
0.663
MYB99
Arabidopsis lyrata
scaffold_802887.1
I
0.663
Bostr.0568s0574
Boechera stricta
Bostr.0568s0574
I
0.663
Cagra.4003s0023
Capsella grandiflora
Cagra.4003s0023
I
0.663
Carubv10028436m.g
Capsella rubella
Carubv10028436m.g
I
0.663
Thhalv10004868m.g
Eutrema salsugineum
Thhalv10004868m.g
I
0.663
MYB20
Arabidopsis thaliana
AT1G66230
I
0.662
BGIOSGA026529
Oryza indica
BGIOSGA026529
I
0.662
BRADI3G42430
Brachypodium distachyon
BRADI3G42430
I
0.662
OB08G29480
Oryza brachyantha
OB08G29480
I
0.662
ORGLA08G0217800
Oryza glaberrima
ORGLA08G0217800
I
0.662
ORUFI08G25210
Oryza rufipogon
ORUFI08G25210
I
0.662
GSMUA_Achr1G18610_001
Musa acuminata
GSMUA_Achr1G18610_001
I
0.661