CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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30054.m000786
(
Ricinus communis
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
30054.m000786
T283855_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
APRR2
M02300_2.00
Arabidopsis thaliana
NNRNWATCNN
NNGATWNYNN
PBM
Weirauch et al.(2014)
pTH7102
0.880
0.957
GPRI1
M00874_2.00
Arabidopsis thaliana
NNDATHN
NDATHNN
PBM
Franco-Zorrilla et al.(2014)
GLK1
0.670
0.830
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
30054.m000786
Myb
236
286
KVDWTPELHKKFVQAVEQLGVDQAIPSRILEMMKVEGLTRHNVASHLQKFR
Links
Other
Myb/SANT
family TFs
Other
Ricinus communis
TFs
82 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PRUPE_ppa004161mg
Prunus persica
PRUPE_ppa004161mg
I
0.884
Pm014733
Prunus mume
Pm014733
I
0.884
Ciclev10031120m.g
Citrus clementina
Ciclev10031120m.g
I
0.884
gene10484-v1.0-hybrid
Fragaria vesca
gene10484-v1.0-hybrid
I
0.884
orange1.1g008254m.g
Citrus sinensis
orange1.1g008254m.g
I
0.884
PK19826.1
Cannabis sativa
PK19826.1
I
0.884
APRR2
Arabidopsis thaliana
AT4G18020
D
0.880
APRR2
Arabidopsis lyrata
fgenesh2_kg.7__2503__AT4G18020.2
I
0.880
Eucgr.E00308
Eucalyptus grandis
Eucgr.E00308
I
0.876
MDP0000237396
Malus domestica
MDP0000237396
I
0.870
Bo1g019180
Brassica oleracea
Bo1g019180
I
0.857
Bo7g105690
Brassica oleracea
Bo7g105690
I
0.857
Bra012623
Brassica rapa
Bra012623
I
0.857
Bra013277
Brassica rapa
Bra013277
I
0.857
Bra013278
Brassica rapa
Bra013278
I
0.857
Bra013279
Brassica rapa
Bra013279
I
0.857
Bostr.30275s0270
Boechera stricta
Bostr.30275s0270
I
0.857
Thhalv10024919m.g
Eutrema salsugineum
Thhalv10024919m.g
I
0.857
Cla008926
Citrullus lanatus
Cla008926
I
0.851
Cucsa.321580
Cucumis sativus
Cucsa.321580
I
0.851
cassava2466.valid.m1
Manihot esculenta
cassava2466.valid.m1
I
0.850
APRR2
Vitis vinifera
VIT_02s0012g00570
I
0.838
TCM_015780
Theobroma cacao
TCM_015780
I
0.835
Lus10011044.g
Linum usitatissimum
Lus10011044.g
I
0.832
Aquca_044_00072
Aquilegia coerulea
Aquca_044_00072
I
0.827
evm.TU.supercontig_6.428
Carica papaya
evm.TU.supercontig_6.428
I
0.824
SapurV1A.0132s0010
Salix purpurea
SapurV1A.0132s0010
I
0.824
MDP0000248863
Malus domestica
MDP0000248863
I
0.820
PDK_20s1585631g001
Phoenix dactylifera
PDK_20s1585631g001
I
0.817
SapurV1A.1296s0050
Salix purpurea
SapurV1A.1296s0050
I
0.812
Lus10040109.g
Linum usitatissimum
Lus10040109.g
I
0.811
POPTR_0001s02910
Populus trichocarpa
POPTR_0001s02910
I
0.806
GLYMA01G40900
Glycine max
GLYMA01G40900
I
0.795
GLYMA11G04441
Glycine max
GLYMA11G04441
I
0.795
SELMODRAFT_428906
Selaginella moellendorffii
SELMODRAFT_428906
I
0.795
Ca_02285
Cicer arietinum
Ca_02285
I
0.795
Gorai.008G228800
Gossypium raimondii
Gorai.008G228800
I
0.795
chr2.CM0021.770.nc
Lotus japonicus
chr2.CM0021.770.nc
I
0.795
MTR_4g098870
Medicago truncatula
MTR_4g098870
I
0.794
Cagra.1595s0002
Capsella grandiflora
Cagra.1595s0002
I
0.790
Carubv10004540m.g
Capsella rubella
Carubv10004540m.g
I
0.790
PGSC0003DMG400024217
Solanum tuberosum
PGSC0003DMG400024217
I
0.787
Solyc08g077230.2
Solanum lycopersicum
Solyc08g077230.2
I
0.787
Ca_12825
Cicer arietinum
Ca_12825
I
0.787
cassava42047.valid.m1
Manihot esculenta
cassava42047.valid.m1
I
0.787
cassava42048.valid.m1
Manihot esculenta
cassava42048.valid.m1
I
0.787
chr4.CM0831.100.nd
Lotus japonicus
chr4.CM0831.100.nd
I
0.787
GLYMA17G16360
Glycine max
GLYMA17G16360
I
0.783
Lus10003013.g
Linum usitatissimum
Lus10003013.g
I
0.777
POPTR_0003s08600
Populus trichocarpa
POPTR_0003s08600
I
0.770
MTR_5g014040
Medicago truncatula
MTR_5g014040
I
0.760
Gorai.004G188300
Gossypium raimondii
Gorai.004G188300
I
0.760
Gorai.003G180100
Gossypium raimondii
Gorai.003G180100
I
0.755
GLYMA05G06070
Glycine max
GLYMA05G06070
I
0.746
AMTR_s00149p00035260
Amborella trichopoda
AMTR_s00149p00035260
I
0.728
Ca_24009
Cicer arietinum
Ca_24009
I
0.728
PGSC0003DMG400026587
Solanum tuberosum
PGSC0003DMG400026587
I
0.721
Solyc06g061030.2
Solanum lycopersicum
Solyc06g061030.2
I
0.721
Cla016403
Citrullus lanatus
Cla016403
I
0.721
GLK2
Arabidopsis thaliana
AT5G44190
I
0.719
fgenesh2_kg.8__391__AT5G44190.1
Arabidopsis lyrata
fgenesh2_kg.8__391__AT5G44190.1
I
0.719
Bostr.3148s0040
Boechera stricta
Bostr.3148s0040
I
0.719
Cagra.0381s0008
Capsella grandiflora
Cagra.0381s0008
I
0.719
Carubv10026528m.g
Capsella rubella
Carubv10026528m.g
I
0.719
Thhalv10003223m.g
Eutrema salsugineum
Thhalv10003223m.g
I
0.719
Lus10030938.g
Linum usitatissimum
Lus10030938.g
I
0.716
GSMUA_Achr11G17740_001
Musa acuminata
GSMUA_Achr11G17740_001
I
0.712
Cucsa.313480
Cucumis sativus
Cucsa.313480
I
0.707
Eucgr.K01056
Eucalyptus grandis
Eucgr.K01056
I
0.697
GSMUA_Achr2G18200_001
Musa acuminata
GSMUA_Achr2G18200_001
I
0.675
GPRI1
Arabidopsis thaliana
AT2G20570
D
0.670
GPRI1
Arabidopsis lyrata
fgenesh2_kg.3__3588__AT2G20570.1
I
0.670
Cla003791
Citrullus lanatus
Cla003791
I
0.670
Cucsa.087530
Cucumis sativus
Cucsa.087530
I
0.670
Bostr.7903s0106
Boechera stricta
Bostr.7903s0106
I
0.670
Cagra.2516s0014
Capsella grandiflora
Cagra.2516s0014
I
0.670
Carubv10014114m.g
Capsella rubella
Carubv10014114m.g
I
0.670
Lus10018649.g
Linum usitatissimum
Lus10018649.g
I
0.670
Lus10033642.g
Linum usitatissimum
Lus10033642.g
I
0.670
Lus10039883.g
Linum usitatissimum
Lus10039883.g
I
0.670
mgf007181m
Mimulus guttatus
mgf007181m
I
0.668
mgf012846m
Mimulus guttatus
mgf012846m
I
0.668