CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava19706.m1
(
Manihot esculenta
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
cassava19706.m1
T284055_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB98
M02301_2.00
Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN
PBM
Weirauch et al.(2014)
pTH8148
0.710
0.849
MYB98
M07108_2.00
Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH
Dap-seq
OMalley et al.(2016)
MYB98_col_a
0.710
0.849
MYB118
M07087_2.00
Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH
Dap-seq
OMalley et al.(2016)
MYB118_col_a
0.708
0.763
MYB118
M07088_2.00
Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH
Dap-seq
OMalley et al.(2016)
MYB118_colamp_a
0.708
0.763
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava19706.m1
Myb
180
226
KGQWTIEEDRLLTQLVEQYGVRKWSHIAQMLPGRIGKQCRERWHNHL
cassava19706.m1
Myb
232
277
KDMWSEDEDKILIHAHAEIGNKWAEIAKRLPGRTENSIKNHWNATK
Links
Other
Myb/SANT
family TFs
Other
Manihot esculenta
TFs
163 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MYB118
Arabidopsis thaliana
AT3G27785
D
0.708
MYB98
Arabidopsis thaliana
AT4G18770
D
0.710
AMTR_s00096p00076220
Amborella trichopoda
AMTR_s00096p00076220
I
0.792
BGIOSGA022369
Oryza indica
BGIOSGA022369
I
0.730
BGIOSGA036541
Oryza indica
BGIOSGA036541
I
0.697
Bo1g019910
Brassica oleracea
Bo1g019910
I
0.710
Bo2g028290
Brassica oleracea
Bo2g028290
I
0.682
Bo2g144970
Brassica oleracea
Bo2g144970
I
0.669
Bo3g018490
Brassica oleracea
Bo3g018490
I
0.678
Bo3g157300
Brassica oleracea
Bo3g157300
I
0.710
Bo7g106240
Brassica oleracea
Bo7g106240
I
0.685
Bra006744
Brassica rapa
Bra006744
I
0.678
Bra012579
Brassica rapa
Bra012579
I
0.672
Bra013346
Brassica rapa
Bra013346
I
0.710
Bra020346
Brassica rapa
Bra020346
I
0.678
Bra020992
Brassica rapa
Bra020992
I
0.701
Bra025299
Brassica rapa
Bra025299
I
0.739
Bra033027
Brassica rapa
Bra033027
I
0.669
F775_22212
Aegilops tauschii
F775_22212
I
0.748
fgenesh2_kg.277__1__AT5G58850.1
Arabidopsis lyrata
fgenesh2_kg.277__1__AT5G58850.1
I
0.666
fgenesh2_kg.3__2684__AT5G58850.1
Arabidopsis lyrata
fgenesh2_kg.3__2684__AT5G58850.1
I
0.666
MYB118
Arabidopsis lyrata
fgenesh2_kg.5__560__AT3G27785.1
I
0.708
GLYMA05G02300
Glycine max
GLYMA05G02300
I
0.855
GLYMA06G19280
Glycine max
GLYMA06G19280
I
0.773
GLYMA16G07927
Glycine max
GLYMA16G07927
I
0.687
GRMZM2G302549
Zea mays
GRMZM2G302549
I
0.707
GRMZM5G870592
Zea mays
GRMZM5G870592
I
0.738
GSMUA_Achr3G19490_001
Musa acuminata
GSMUA_Achr3G19490_001
I
0.761
GSMUA_Achr6G06490_001
Musa acuminata
GSMUA_Achr6G06490_001
I
0.726
LPERR06G03780
Leersia perrieri
LPERR06G03780
I
0.748
LPERR12G04190
Leersia perrieri
LPERR12G04190
I
0.688
MTR_3g077650
Medicago truncatula
MTR_3g077650
I
0.777
MTR_4g088015
Medicago truncatula
MTR_4g088015
I
0.671
MTR_5g049190
Medicago truncatula
MTR_5g049190
I
0.779
MTR_7g037260
Medicago truncatula
MTR_7g037260
I
0.668
OB06G13860
Oryza brachyantha
OB06G13860
I
0.739
OB12G14410
Oryza brachyantha
OB12G14410
I
0.677
OBART06G04170
Oryza barthii
OBART06G04170
I
0.730
OBART12G04480
Oryza barthii
OBART12G04480
I
0.697
OBART12G04500
Oryza barthii
OBART12G04500
I
0.697
OGLUM06G04280
Oryza glumaepatula
OGLUM06G04280
I
0.730
OGLUM12G05330
Oryza glumaepatula
OGLUM12G05330
I
0.697
OLONG_008158
Oryza longistaminata
OLONG_008158
I
0.697
OLONG_010000
Oryza longistaminata
OLONG_010000
I
0.730
OMERI06G04840
Oryza meridionalis
OMERI06G04840
I
0.730
OMERI12G02760
Oryza meridionalis
OMERI12G02760
I
0.697
ONIVA06G05390
Oryza nivara
ONIVA06G05390
I
0.730
ONIVA12G04220
Oryza nivara
ONIVA12G04220
I
0.697
OPUNC06G03990
Oryza punctata
OPUNC06G03990
I
0.730
OPUNC12G04510
Oryza punctata
OPUNC12G04510
I
0.697
ORGLA06G0038500
Oryza glaberrima
ORGLA06G0038500
I
0.730
ORGLA12G0042300
Oryza glaberrima
ORGLA12G0042300
I
0.697
ORUFI06G04170
Oryza rufipogon
ORUFI06G04170
I
0.730
ORUFI12G05180
Oryza rufipogon
ORUFI12G05180
I
0.688
OS06G0162700
Oryza sativa
OS06G0162700
I
0.730
PGSC0003DMG400018092
Solanum tuberosum
PGSC0003DMG400018092
I
0.725
PGSC0003DMG400036895
Solanum tuberosum
PGSC0003DMG400036895
I
0.787
MYB118
Populus trichocarpa
POPTR_0001s35140
I
0.714
POPTR_0005s12050
Populus trichocarpa
POPTR_0005s12050
I
0.733
POPTR_0012s08360
Populus trichocarpa
POPTR_0012s08360
I
0.786
POPTR_0015s08880
Populus trichocarpa
POPTR_0015s08880
I
0.784
PRUPE_ppa018123mg
Prunus persica
PRUPE_ppa018123mg
I
0.764
PRUPE_ppa019507mg
Prunus persica
PRUPE_ppa019507mg
I
0.732
PRUPE_ppa026791mg
Prunus persica
PRUPE_ppa026791mg
I
0.890
Sb01g005100
Sorghum bicolor
Sb01g005100
I
0.744
MYB98
Arabidopsis lyrata
scaffold_702543.1
I
0.710
Si039046m.g
Setaria italica
Si039046m.g
I
0.753
Solyc03g112890.1
Solanum lycopersicum
Solyc03g112890.1
I
0.725
Solyc06g071520.1
Solanum lycopersicum
Solyc06g071520.1
I
0.832
TCM_012087
Theobroma cacao
TCM_012087
I
0.866
TCM_016909
Theobroma cacao
TCM_016909
I
0.705
Traes_1BL_4D9406708
Triticum aestivum
Traes_1BL_4D9406708
I
0.736
Traes_1DL_918A8F357
Triticum aestivum
Traes_1DL_918A8F357
I
0.735
Traes_7AS_A337F362A
Triticum aestivum
Traes_7AS_A337F362A
I
0.748
Traes_7BS_D28CCE3B8
Triticum aestivum
Traes_7BS_D28CCE3B8
I
0.748
Traes_7DS_E27ECBC6E
Triticum aestivum
Traes_7DS_E27ECBC6E
I
0.720
TRIUR3_12421
Triticum urartu
TRIUR3_12421
I
0.748
VIT_14s0066g01010
Vitis vinifera
VIT_14s0066g01010
I
0.685
MYB98
Vitis vinifera
VIT_17s0000g08550
I
0.871
Ca_07482
Cicer arietinum
Ca_07482
I
0.751
Ca_17087
Cicer arietinum
Ca_17087
I
0.756
Ca_17294
Cicer arietinum
Ca_17294
I
0.803
Ca_19427
Cicer arietinum
Ca_19427
I
0.683
Cla010586
Citrullus lanatus
Cla010586
I
0.696
Cla019490
Citrullus lanatus
Cla019490
I
0.840
Pm000541
Prunus mume
Pm000541
I
0.764
Pm015681
Prunus mume
Pm015681
I
0.723
Pm024743
Prunus mume
Pm024743
I
0.890
29917.m001977
Ricinus communis
29917.m001977
I
0.696
30147.m013937
Ricinus communis
30147.m013937
I
0.821
cassava33974.m1
Manihot esculenta
cassava33974.m1
I
0.817
cassava9008.m1
Manihot esculenta
cassava9008.m1
I
0.766
Cucsa.196850
Cucumis sativus
Cucsa.196850
I
0.836
mg025334m
Mimulus guttatus
mg025334m
I
0.743
mgf023372m
Mimulus guttatus
mgf023372m
I
0.701
mgf024290m
Mimulus guttatus
mgf024290m
I
0.761
Aquca_045_00020
Aquilegia coerulea
Aquca_045_00020
I
0.691
Bostr.0556s0457
Boechera stricta
Bostr.0556s0457
I
0.708
Bostr.30275s0352
Boechera stricta
Bostr.30275s0352
I
0.710
Cagra.11216s0002
Capsella grandiflora
Cagra.11216s0002
I
0.708
Cagra.4306s0015
Capsella grandiflora
Cagra.4306s0015
I
0.710
Carubv10006734m.g
Capsella rubella
Carubv10006734m.g
I
0.710
Carubv10018693m.g
Capsella rubella
Carubv10018693m.g
I
0.708
Ciclev10017526m.g
Citrus clementina
Ciclev10017526m.g
I
0.686
Ciclev10024427m.g
Citrus clementina
Ciclev10024427m.g
I
0.804
Eucgr.B00300
Eucalyptus grandis
Eucgr.B00300
I
0.721
Eucgr.B00301
Eucalyptus grandis
Eucgr.B00301
I
0.829
evm.TU.supercontig_76.38
Carica papaya
evm.TU.supercontig_76.38
I
0.816
gene08006-v1.0-hybrid
Fragaria vesca
gene08006-v1.0-hybrid
I
0.728
gene32198-v1.0-hybrid
Fragaria vesca
gene32198-v1.0-hybrid
I
0.866
Gorai.001G263600
Gossypium raimondii
Gorai.001G263600
I
0.713
Gorai.008G295800
Gossypium raimondii
Gorai.008G295800
I
0.824
Lus10002384.g
Linum usitatissimum
Lus10002384.g
I
0.771
Lus10027695.g
Linum usitatissimum
Lus10027695.g
I
0.750
Lus10039966.g
Linum usitatissimum
Lus10039966.g
I
0.700
Lus10042111.g
Linum usitatissimum
Lus10042111.g
I
0.775
MDP0000199939
Malus domestica
MDP0000199939
I
0.682
MDP0000215359
Malus domestica
MDP0000215359
I
0.849
MDP0000319656
Malus domestica
MDP0000319656
I
0.764
orange1.1g044021m.g
Citrus sinensis
orange1.1g044021m.g
I
0.686
orange1.1g046859m.g
Citrus sinensis
orange1.1g046859m.g
I
0.804
Pavir.J02497
Panicum virgatum
Pavir.J02497
I
0.770
Pavir.J02718
Panicum virgatum
Pavir.J02718
I
0.770
Pavir.J25000
Panicum virgatum
Pavir.J25000
I
0.737
Pavir.J37434
Panicum virgatum
Pavir.J37434
I
0.733
SapurV1A.0396s0170
Salix purpurea
SapurV1A.0396s0170
I
0.738
SapurV1A.0571s0110
Salix purpurea
SapurV1A.0571s0110
I
0.730
SapurV1A.2163s0040
Salix purpurea
SapurV1A.2163s0040
I
0.817
Thhalv10005564m.g
Eutrema salsugineum
Thhalv10005564m.g
I
0.717
Thhalv10026824m.g
Eutrema salsugineum
Thhalv10026824m.g
I
0.720
GLYMA05G08761
Glycine max
GLYMA05G08761
N
0.675
GLYMA18G07360
Glycine max
GLYMA18G07360
N
0.710
GSMUA_Achr10G00770_001
Musa acuminata
GSMUA_Achr10G00770_001
N
0.758
GSMUA_Achr3G09050_001
Musa acuminata
GSMUA_Achr3G09050_001
N
0.670
GSMUA_Achr6G33700_001
Musa acuminata
GSMUA_Achr6G33700_001
N
0.743
GSMUA_Achr8G02290_001
Musa acuminata
GSMUA_Achr8G02290_001
N
0.703
MTR_3g463400
Medicago truncatula
MTR_3g463400
N
0.698
MTR_4g105660
Medicago truncatula
MTR_4g105660
N
0.757
MTR_5g070020
Medicago truncatula
MTR_5g070020
N
0.668
PGSC0003DMG400044141
Solanum tuberosum
PGSC0003DMG400044141
N
0.685
POPTR_0001s25710
Populus trichocarpa
POPTR_0001s25710
N
0.721
POPTR_0009s04870
Populus trichocarpa
POPTR_0009s04870
N
0.720
Solyc06g076840.1
Solanum lycopersicum
Solyc06g076840.1
N
0.685
TCM_041651
Theobroma cacao
TCM_041651
N
0.701
Cla008304
Citrullus lanatus
Cla008304
N
0.704
29681.m001315
Ricinus communis
29681.m001315
N
0.725
cassava26507.m1
Manihot esculenta
cassava26507.m1
N
0.754
cassava26674.m1
Manihot esculenta
cassava26674.m1
N
0.725
Cucsa.146980
Cucumis sativus
Cucsa.146980
N
0.707
Bostr.20821s0001
Boechera stricta
Bostr.20821s0001
N
0.682
Ciclev10030254m.g
Citrus clementina
Ciclev10030254m.g
N
0.735
evm.TU.supercontig_112.44
Carica papaya
evm.TU.supercontig_112.44
N
0.729
Gorai.001G115300
Gossypium raimondii
Gorai.001G115300
N
0.728
Gorai.011G044100
Gossypium raimondii
Gorai.011G044100
N
0.728
Lus10018220.g
Linum usitatissimum
Lus10018220.g
N
0.684
Lus10040684.g
Linum usitatissimum
Lus10040684.g
N
0.681
orange1.1g046581m.g
Citrus sinensis
orange1.1g046581m.g
N
0.735
SapurV1A.0041s0840
Salix purpurea
SapurV1A.0041s0840
N
0.678
SapurV1A.0772s0150
Salix purpurea
SapurV1A.0772s0150
N
0.700
Thhalv10015404m.g
Eutrema salsugineum
Thhalv10015404m.g
N
0.703
Thhalv10027294m.g
Eutrema salsugineum
Thhalv10027294m.g
N
0.703
chr4.CM0042.120.nd
Lotus japonicus
chr4.CM0042.120.nd
N
0.719
PDK_20s1782461g001
Phoenix dactylifera
PDK_20s1782461g001
N
0.736