cassava39089.m1 (Manihot esculenta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 cassava39089.m1 T284250_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB124
M01267_2.00 		Arabidopsis thaliana
NNVCGCKCBN
NVGMGCGBNN		 PBM
Lambert et al.(2019)
pTH11556 		0.847 0.890
MYB88
M07042_2.00 		Arabidopsis thaliana
NNNHNACGCKCCDHH
DDHGGMGCGTNDNNN		 Dap-seq
OMalley et al.(2016)
MYB88_col_a 		0.810 0.868
MYB88
M07043_2.00 		Arabidopsis thaliana
NNNACGCTCCHNN
NNDGGAGCGTNNN		 Dap-seq
OMalley et al.(2016)
MYB88_colamp_a 		0.810 0.868
MYB88
M11038_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB88_01 		0.810 0.868
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava39089.m1 Myb 23 68
cassava39089.m1 Myb 74 118

Links

Other Myb/SANT family TFs
Other Manihot esculenta TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00010p00252990 Amborella trichopoda AMTR_s00010p00252990 I 0.722
Aquca_002_00543 Aquilegia coerulea Aquca_002_00543 I 0.815
FLP Arabidopsis lyrata fgenesh2_kg.1__1561__AT1G14350.1 I 0.792
MYB88 Arabidopsis lyrata fgenesh2_kg.5__181__AT2G02820.2 I 0.810
MYB124 Arabidopsis thaliana AT1G14350 D 0.847
MYB88 Arabidopsis thaliana AT2G02820 D 0.810
Bostr.13671s0016 Boechera stricta Bostr.13671s0016 I 0.831
Bostr.0556s0099 Boechera stricta Bostr.0556s0099 I 0.780
Bo2g136560 Brassica oleracea Bo2g136560 I 0.819
Bo5g019500 Brassica oleracea Bo5g019500 I 0.821
Bo7g080730 Brassica oleracea Bo7g080730 I 0.810
Bra019658 Brassica rapa Bra019658 I 0.830
Bra024804 Brassica rapa Bra024804 I 0.810
PK05123.1 Cannabis sativa PK05123.1 I 0.870
Cagra.3501s0066 Capsella grandiflora Cagra.3501s0066 I 0.831
Cagra.0534s0022 Capsella grandiflora Cagra.0534s0022 I 0.759
Carubv10011707m.g Capsella rubella Carubv10011707m.g I 0.831
Carubv10017119m.g Capsella rubella Carubv10017119m.g I 0.759
evm.TU.supercontig_183.27 Carica papaya evm.TU.supercontig_183.27 I 0.901
Ca_18779 Cicer arietinum Ca_18779 I 0.879
Cla010333 Citrullus lanatus Cla010333 I 0.843
Ciclev10031405m.g Citrus clementina Ciclev10031405m.g I 0.872
orange1.1g044977m.g Citrus sinensis orange1.1g044977m.g I 0.872
Cucsa.285270 Cucumis sativus Cucsa.285270 I 0.843
Eucgr.B03417 Eucalyptus grandis Eucgr.B03417 I 0.852
Eucgr.G02522 Eucalyptus grandis Eucgr.G02522 I 0.796
Thhalv10007659m.g Eutrema salsugineum Thhalv10007659m.g I 0.830
Thhalv10004109m.g Eutrema salsugineum Thhalv10004109m.g I 0.827
GLYMA08G40950 Glycine max GLYMA08G40950 I 0.832
GLYMA02G02310 Glycine max GLYMA02G02310 I 0.879
GLYMA01G05190 Glycine max GLYMA01G05190 I 0.870
GLYMA18G16040 Glycine max GLYMA18G16040 I 0.831
Gorai.013G083300 Gossypium raimondii Gorai.013G083300 I 0.875
Gorai.005G139500 Gossypium raimondii Gorai.005G139500 I 0.901
LPERR07G19800 Leersia perrieri LPERR07G19800 I 0.677
Lus10030494.g Linum usitatissimum Lus10030494.g I 0.825
Lus10012847.g Linum usitatissimum Lus10012847.g I 0.825
MDP0000210970 Malus domestica MDP0000210970 I 0.863
MDP0000165523 Malus domestica MDP0000165523 I 0.909
cassava35260.valid.m1 Manihot esculenta cassava35260.valid.m1 I 0.909
MTR_5g038910 Medicago truncatula MTR_5g038910 I 0.879
MTR_8g468380 Medicago truncatula MTR_8g468380 I 0.860
mgf009409m Mimulus guttatus mgf009409m I 0.794
GSMUA_Achr6G10650_001 Musa acuminata GSMUA_Achr6G10650_001 I 0.721
GSMUA_Achr10G18880_001 Musa acuminata GSMUA_Achr10G18880_001 I 0.778
OBART07G22930 Oryza barthii OBART07G22930 I 0.724
OB07G28520 Oryza brachyantha OB07G28520 I 0.720
ORGLA07G0179200 Oryza glaberrima ORGLA07G0179200 I 0.724
OGLUM07G22980 Oryza glumaepatula OGLUM07G22980 I 0.724
BGIOSGA026188 Oryza indica BGIOSGA026188 I 0.724
OPUNC07G21540 Oryza punctata OPUNC07G21540 I 0.715
ORUFI07G24080 Oryza rufipogon ORUFI07G24080 I 0.724
OS07G0627300 Oryza sativa OS07G0627300 I 0.724
Pavir.J36475 Panicum virgatum Pavir.J36475 I 0.723
Pavir.Bb03405 Panicum virgatum Pavir.Bb03405 I 0.702
PDK_20s1473891g001 Phoenix dactylifera PDK_20s1473891g001 I 0.730
POPTR_0010s10310 Populus trichocarpa POPTR_0010s10310 I 0.909
POPTR_0008s14790 Populus trichocarpa POPTR_0008s14790 I 0.870
Pm006532 Prunus mume Pm006532 I 0.871
PRUPE_ppa017536mg Prunus persica PRUPE_ppa017536mg I 0.871
29736.m002013 Ricinus communis 29736.m002013 I 0.888
SapurV1A.0200s0020 Salix purpurea SapurV1A.0200s0020 I 0.870
SapurV1A.0062s0030 Salix purpurea SapurV1A.0062s0030 I 0.909
Si029124m.g Setaria italica Si029124m.g I 0.732
Solyc05g007160.2 Solanum lycopersicum Solyc05g007160.2 I 0.826
Solyc04g005710.1 Solanum lycopersicum Solyc04g005710.1 I 0.748
PGSC0003DMG400002828 Solanum tuberosum PGSC0003DMG400002828 I 0.731
PGSC0003DMG400025612 Solanum tuberosum PGSC0003DMG400025612 I 0.826
PGSC0003DMG400026758 Solanum tuberosum PGSC0003DMG400026758 I 0.731
Sb02g040050 Sorghum bicolor Sb02g040050 I 0.724
TCM_011776 Theobroma cacao TCM_011776 I 0.879
Traes_2AS_1161E1D2E Triticum aestivum Traes_2AS_1161E1D2E I 0.704
Traes_2BS_F1B450FA4 Triticum aestivum Traes_2BS_F1B450FA4 I 0.704
Traes_2DS_9430AAD52 Triticum aestivum Traes_2DS_9430AAD52 I 0.704
VIT_01s0026g01910 Vitis vinifera VIT_01s0026g01910 I 0.875
GRMZM2G064630 Zea mays GRMZM2G064630 I 0.724