Cucsa.285270 (Cucumis sativus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cucsa.285270 T284496_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB124
M01267_2.00 		Arabidopsis thaliana
NNVCGCKCBN
NVGMGCGBNN		 PBM
Lambert et al.(2019)
pTH11556 		0.804 0.879
MYB88
M07042_2.00 		Arabidopsis thaliana
NNNHNACGCKCCDHH
DDHGGMGCGTNDNNN		 Dap-seq
OMalley et al.(2016)
MYB88_col_a 		0.776 0.846
MYB88
M07043_2.00 		Arabidopsis thaliana
NNNACGCTCCHNN
NNDGGAGCGTNNN		 Dap-seq
OMalley et al.(2016)
MYB88_colamp_a 		0.776 0.846
MYB88
M11038_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB88_01 		0.776 0.846
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.285270.1 Myb 21 66
Cucsa.285270.1 Myb 72 116
Cucsa.285270.2 Myb 21 66
Cucsa.285270.2 Myb 72 116
Cucsa.285270.3 Myb 21 66
Cucsa.285270.3 Myb 72 116

Links

Other Myb/SANT family TFs
Other Cucumis sativus TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29736.m002013 Ricinus communis 29736.m002013 I 0.863
AMTR_s00010p00252990 Amborella trichopoda AMTR_s00010p00252990 I 0.718
Aquca_002_00543 Aquilegia coerulea Aquca_002_00543 I 0.797
MYB124 Arabidopsis thaliana AT1G14350 D 0.804
MYB88 Arabidopsis thaliana AT2G02820 D 0.776
BGIOSGA026188 Oryza indica BGIOSGA026188 I 0.708
Bo2g136560 Brassica oleracea Bo2g136560 I 0.785
Bo5g019500 Brassica oleracea Bo5g019500 I 0.786
Bo7g080730 Brassica oleracea Bo7g080730 I 0.776
Bostr.0556s0099 Boechera stricta Bostr.0556s0099 I 0.776
Bostr.13671s0016 Boechera stricta Bostr.13671s0016 I 0.819
Bra019658 Brassica rapa Bra019658 I 0.786
Bra024804 Brassica rapa Bra024804 I 0.776
Cagra.0534s0022 Capsella grandiflora Cagra.0534s0022 I 0.755
Cagra.3501s0066 Capsella grandiflora Cagra.3501s0066 I 0.819
Carubv10011707m.g Capsella rubella Carubv10011707m.g I 0.819
Carubv10017119m.g Capsella rubella Carubv10017119m.g I 0.755
cassava35260.valid.m1 Manihot esculenta cassava35260.valid.m1 I 0.843
cassava39089.m1 Manihot esculenta cassava39089.m1 I 0.843
Ca_18779 Cicer arietinum Ca_18779 I 0.843
Ciclev10031405m.g Citrus clementina Ciclev10031405m.g I 0.836
Cla010333 Citrullus lanatus Cla010333 I 0.909
Eucgr.B03417 Eucalyptus grandis Eucgr.B03417 I 0.848
Eucgr.G02522 Eucalyptus grandis Eucgr.G02522 I 0.792
evm.TU.supercontig_183.27 Carica papaya evm.TU.supercontig_183.27 I 0.835
FLP Arabidopsis lyrata fgenesh2_kg.1__1561__AT1G14350.1 I 0.779
MYB88 Arabidopsis lyrata fgenesh2_kg.5__181__AT2G02820.2 I 0.776
GLYMA01G05190 Glycine max GLYMA01G05190 I 0.843
GLYMA02G02310 Glycine max GLYMA02G02310 I 0.843
GLYMA08G40950 Glycine max GLYMA08G40950 I 0.796
GLYMA18G16040 Glycine max GLYMA18G16040 I 0.805
Gorai.005G139500 Gossypium raimondii Gorai.005G139500 I 0.835
Gorai.013G083300 Gossypium raimondii Gorai.013G083300 I 0.809
GRMZM2G064630 Zea mays GRMZM2G064630 I 0.690
GSMUA_Achr10G18880_001 Musa acuminata GSMUA_Achr10G18880_001 I 0.712
Lus10012847.g Linum usitatissimum Lus10012847.g I 0.831
Lus10030494.g Linum usitatissimum Lus10030494.g I 0.831
MDP0000165523 Malus domestica MDP0000165523 I 0.843
MDP0000210970 Malus domestica MDP0000210970 I 0.858
mgf009409m Mimulus guttatus mgf009409m I 0.796
mgf021059m Mimulus guttatus mgf021059m N 0.666
MTR_5g038910 Medicago truncatula MTR_5g038910 I 0.843
MTR_8g468380 Medicago truncatula MTR_8g468380 I 0.833
OB07G28520 Oryza brachyantha OB07G28520 I 0.703
OBART07G22930 Oryza barthii OBART07G22930 I 0.708
OGLUM07G22980 Oryza glumaepatula OGLUM07G22980 I 0.708
OPUNC07G21540 Oryza punctata OPUNC07G21540 I 0.699
orange1.1g044977m.g Citrus sinensis orange1.1g044977m.g I 0.836
ORGLA07G0179200 Oryza glaberrima ORGLA07G0179200 I 0.708
ORUFI07G24080 Oryza rufipogon ORUFI07G24080 I 0.708
OS07G0627300 Oryza sativa OS07G0627300 I 0.708
Pavir.Bb03405 Panicum virgatum Pavir.Bb03405 I 0.727
Pavir.J36475 Panicum virgatum Pavir.J36475 I 0.672
PDK_20s1473891g001 Phoenix dactylifera PDK_20s1473891g001 I 0.689
PGSC0003DMG400002828 Solanum tuberosum PGSC0003DMG400002828 I 0.733
PGSC0003DMG400025612 Solanum tuberosum PGSC0003DMG400025612 I 0.844
PGSC0003DMG400026758 Solanum tuberosum PGSC0003DMG400026758 I 0.733
PK05123.1 Cannabis sativa PK05123.1 I 0.852
Pm006532 Prunus mume Pm006532 I 0.835
POPTR_0008s14790 Populus trichocarpa POPTR_0008s14790 I 0.882
POPTR_0010s10310 Populus trichocarpa POPTR_0010s10310 I 0.843
PRUPE_ppa017536mg Prunus persica PRUPE_ppa017536mg I 0.835
SapurV1A.0062s0030 Salix purpurea SapurV1A.0062s0030 I 0.843
SapurV1A.0200s0020 Salix purpurea SapurV1A.0200s0020 I 0.882
Sb02g040050 Sorghum bicolor Sb02g040050 I 0.690
Si029124m.g Setaria italica Si029124m.g I 0.697
Solyc04g005710.1 Solanum lycopersicum Solyc04g005710.1 I 0.766
Solyc05g007160.2 Solanum lycopersicum Solyc05g007160.2 I 0.844
TCM_011776 Theobroma cacao TCM_011776 I 0.813
Thhalv10004109m.g Eutrema salsugineum Thhalv10004109m.g I 0.793
Thhalv10007659m.g Eutrema salsugineum Thhalv10007659m.g I 0.786
Traes_2AS_1161E1D2E Triticum aestivum Traes_2AS_1161E1D2E I 0.683
Traes_2BS_F1B450FA4 Triticum aestivum Traes_2BS_F1B450FA4 I 0.699
Traes_2DS_9430AAD52 Triticum aestivum Traes_2DS_9430AAD52 I 0.683
VIT_01s0026g01910 Vitis vinifera VIT_01s0026g01910 I 0.828