CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.285270
(
Cucumis sativus
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cucsa.285270
T284496_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB124
M01267_2.00
Arabidopsis thaliana
NNVCGCKCBN
NVGMGCGBNN
PBM
Lambert et al.(2019)
pTH11556
0.804
0.879
MYB88
M07042_2.00
Arabidopsis thaliana
NNNHNACGCKCCDHH
DDHGGMGCGTNDNNN
Dap-seq
OMalley et al.(2016)
MYB88_col_a
0.776
0.846
MYB88
M07043_2.00
Arabidopsis thaliana
NNNACGCTCCHNN
NNDGGAGCGTNNN
Dap-seq
OMalley et al.(2016)
MYB88_colamp_a
0.776
0.846
MYB88
M11038_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB88_01
0.776
0.846
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.285270.1
Myb
21
66
VSWTQQEDDILREQINQHGTENWAIIASKFKDKTTRQCRRRWYTYL
Cucsa.285270.1
Myb
72
116
KGGWSPEEDLLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFTTL
Cucsa.285270.2
Myb
21
66
VSWTQQEDDILREQINQHGTENWAIIASKFKDKTTRQCRRRWYTYL
Cucsa.285270.2
Myb
72
116
KGGWSPEEDLLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFTTL
Cucsa.285270.3
Myb
21
66
VSWTQQEDDILREQINQHGTENWAIIASKFKDKTTRQCRRRWYTYL
Cucsa.285270.3
Myb
72
116
KGGWSPEEDLLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFTTL
Links
Other
Myb/SANT
family TFs
Other
Cucumis sativus
TFs
76 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MYB124
Arabidopsis thaliana
AT1G14350
D
0.804
MYB88
Arabidopsis thaliana
AT2G02820
D
0.776
Ciclev10031405m.g
Citrus clementina
Ciclev10031405m.g
I
0.836
Traes_2DS_9430AAD52
Triticum aestivum
Traes_2DS_9430AAD52
I
0.683
Carubv10017119m.g
Capsella rubella
Carubv10017119m.g
I
0.755
Carubv10011707m.g
Capsella rubella
Carubv10011707m.g
I
0.819
Cagra.3501s0066
Capsella grandiflora
Cagra.3501s0066
I
0.819
Cagra.0534s0022
Capsella grandiflora
Cagra.0534s0022
I
0.755
Bostr.13671s0016
Boechera stricta
Bostr.13671s0016
I
0.819
Bostr.0556s0099
Boechera stricta
Bostr.0556s0099
I
0.776
Aquca_002_00543
Aquilegia coerulea
Aquca_002_00543
I
0.797
mgf009409m
Mimulus guttatus
mgf009409m
I
0.796
cassava39089.m1
Manihot esculenta
cassava39089.m1
I
0.843
cassava35260.valid.m1
Manihot esculenta
cassava35260.valid.m1
I
0.843
29736.m002013
Ricinus communis
29736.m002013
I
0.863
Pm006532
Prunus mume
Pm006532
I
0.835
Cla010333
Citrullus lanatus
Cla010333
I
0.909
Ca_18779
Cicer arietinum
Ca_18779
I
0.843
VIT_01s0026g01910
Vitis vinifera
VIT_01s0026g01910
I
0.828
PDK_20s1473891g001
Phoenix dactylifera
PDK_20s1473891g001
I
0.689
orange1.1g044977m.g
Citrus sinensis
orange1.1g044977m.g
I
0.836
AMTR_s00010p00252990
Amborella trichopoda
AMTR_s00010p00252990
I
0.718
PK05123.1
Cannabis sativa
PK05123.1
I
0.852
Thhalv10007659m.g
Eutrema salsugineum
Thhalv10007659m.g
I
0.786
Thhalv10004109m.g
Eutrema salsugineum
Thhalv10004109m.g
I
0.793
SapurV1A.0200s0020
Salix purpurea
SapurV1A.0200s0020
I
0.882
SapurV1A.0062s0030
Salix purpurea
SapurV1A.0062s0030
I
0.843
Pavir.J36475
Panicum virgatum
Pavir.J36475
I
0.672
Pavir.Bb03405
Panicum virgatum
Pavir.Bb03405
I
0.727
Eucgr.B03417
Eucalyptus grandis
Eucgr.B03417
I
0.848
MDP0000210970
Malus domestica
MDP0000210970
I
0.858
MDP0000165523
Malus domestica
MDP0000165523
I
0.843
Lus10030494.g
Linum usitatissimum
Lus10030494.g
I
0.831
Lus10012847.g
Linum usitatissimum
Lus10012847.g
I
0.831
Gorai.013G083300
Gossypium raimondii
Gorai.013G083300
I
0.809
Gorai.005G139500
Gossypium raimondii
Gorai.005G139500
I
0.835
evm.TU.supercontig_183.27
Carica papaya
evm.TU.supercontig_183.27
I
0.835
Eucgr.G02522
Eucalyptus grandis
Eucgr.G02522
I
0.792
GLYMA01G05190
Glycine max
GLYMA01G05190
I
0.843
OBART07G22930
Oryza barthii
OBART07G22930
I
0.708
OB07G28520
Oryza brachyantha
OB07G28520
I
0.703
MTR_8g468380
Medicago truncatula
MTR_8g468380
I
0.833
MTR_5g038910
Medicago truncatula
MTR_5g038910
I
0.843
GSMUA_Achr10G18880_001
Musa acuminata
GSMUA_Achr10G18880_001
I
0.712
GRMZM2G064630
Zea mays
GRMZM2G064630
I
0.690
GLYMA18G16040
Glycine max
GLYMA18G16040
I
0.805
GLYMA08G40950
Glycine max
GLYMA08G40950
I
0.796
GLYMA02G02310
Glycine max
GLYMA02G02310
I
0.843
OGLUM07G22980
Oryza glumaepatula
OGLUM07G22980
I
0.708
MYB88
Arabidopsis lyrata
fgenesh2_kg.5__181__AT2G02820.2
I
0.776
FLP
Arabidopsis lyrata
fgenesh2_kg.1__1561__AT1G14350.1
I
0.779
Bra024804
Brassica rapa
Bra024804
I
0.776
Bra019658
Brassica rapa
Bra019658
I
0.786
Bo7g080730
Brassica oleracea
Bo7g080730
I
0.776
Bo5g019500
Brassica oleracea
Bo5g019500
I
0.786
Bo2g136560
Brassica oleracea
Bo2g136560
I
0.785
BGIOSGA026188
Oryza indica
BGIOSGA026188
I
0.708
POPTR_0008s14790
Populus trichocarpa
POPTR_0008s14790
I
0.882
Traes_2AS_1161E1D2E
Triticum aestivum
Traes_2AS_1161E1D2E
I
0.683
TCM_011776
Theobroma cacao
TCM_011776
I
0.813
Solyc05g007160.2
Solanum lycopersicum
Solyc05g007160.2
I
0.844
Solyc04g005710.1
Solanum lycopersicum
Solyc04g005710.1
I
0.766
Si029124m.g
Setaria italica
Si029124m.g
I
0.697
Sb02g040050
Sorghum bicolor
Sb02g040050
I
0.690
PRUPE_ppa017536mg
Prunus persica
PRUPE_ppa017536mg
I
0.835
POPTR_0010s10310
Populus trichocarpa
POPTR_0010s10310
I
0.843
Traes_2BS_F1B450FA4
Triticum aestivum
Traes_2BS_F1B450FA4
I
0.699
PGSC0003DMG400026758
Solanum tuberosum
PGSC0003DMG400026758
I
0.733
PGSC0003DMG400025612
Solanum tuberosum
PGSC0003DMG400025612
I
0.844
PGSC0003DMG400002828
Solanum tuberosum
PGSC0003DMG400002828
I
0.733
OS07G0627300
Oryza sativa
OS07G0627300
I
0.708
ORUFI07G24080
Oryza rufipogon
ORUFI07G24080
I
0.708
ORGLA07G0179200
Oryza glaberrima
ORGLA07G0179200
I
0.708
OPUNC07G21540
Oryza punctata
OPUNC07G21540
I
0.699
mgf021059m
Mimulus guttatus
mgf021059m
N
0.666