Cucsa.285270 (Cucumis sativus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cucsa.285270 T284496_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB124
M01267_2.00 		Arabidopsis thaliana
NNVCGCKCBN
NVGMGCGBNN		 PBM
Lambert et al.(2019)
pTH11556 		0.804 0.879
MYB88
M07042_2.00 		Arabidopsis thaliana
NNNHNACGCKCCDHH
DDHGGMGCGTNDNNN		 Dap-seq
OMalley et al.(2016)
MYB88_col_a 		0.776 0.846
MYB88
M07043_2.00 		Arabidopsis thaliana
NNNACGCTCCHNN
NNDGGAGCGTNNN		 Dap-seq
OMalley et al.(2016)
MYB88_colamp_a 		0.776 0.846
MYB88
M11038_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB88_01 		0.776 0.846
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.285270.1 Myb 21 66
Cucsa.285270.1 Myb 72 116
Cucsa.285270.2 Myb 21 66
Cucsa.285270.2 Myb 72 116
Cucsa.285270.3 Myb 21 66
Cucsa.285270.3 Myb 72 116

Links

Other Myb/SANT family TFs
Other Cucumis sativus TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORGLA01G0213300 Oryza glaberrima ORGLA01G0213300 I
Sb03g030750 Sorghum bicolor Sb03g030750 I
Si002301m.g Setaria italica Si002301m.g I