CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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estExt_gwp_gw1.C_310256
(
Physcomitrella patens
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
estExt_gwp_gw1.C_310256
T284829_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GPRI1
M00874_2.00
Arabidopsis thaliana
NNDATHN
NDATHNN
PBM
Franco-Zorrilla et al.(2014)
GLK1
0.777
0.915
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_gwp_gw1.C_310256
Myb
228
278
KVDWTPELHRRFVHAVEQLGVEKAYPSRILELMGVQCLTRHNIASHLQKYR
Links
Other
Myb/SANT
family TFs
Other
Physcomitrella patens
TFs
102 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava9823.m1
Manihot esculenta
cassava9823.m1
I
0.813
fgenesh1_pm.scaffold_311000005
Physcomitrella patens
fgenesh1_pm.scaffold_311000005
I
0.813
AMTR_s00058p00133630
Amborella trichopoda
AMTR_s00058p00133630
I
0.798
POPTR_0007s01230
Populus trichocarpa
POPTR_0007s01230
I
0.798
POPTR_0017s04720
Populus trichocarpa
POPTR_0017s04720
I
0.798
PRUPE_ppa014599mg
Prunus persica
PRUPE_ppa014599mg
I
0.798
TCM_008193
Theobroma cacao
TCM_008193
I
0.798
Pm014123
Prunus mume
Pm014123
I
0.798
29983.m003131
Ricinus communis
29983.m003131
I
0.798
cassava43649.valid.m1
Manihot esculenta
cassava43649.valid.m1
I
0.798
cassava43650.valid.m1
Manihot esculenta
cassava43650.valid.m1
I
0.798
Ciclev10015266m.g
Citrus clementina
Ciclev10015266m.g
I
0.798
gene17750-v1.0-hybrid
Fragaria vesca
gene17750-v1.0-hybrid
I
0.798
Gorai.002G020300
Gossypium raimondii
Gorai.002G020300
I
0.798
Gorai.012G126600
Gossypium raimondii
Gorai.012G126600
I
0.798
MDP0000225179
Malus domestica
MDP0000225179
I
0.798
MDP0000526864
Malus domestica
MDP0000526864
I
0.798
orange1.1g013528m.g
Citrus sinensis
orange1.1g013528m.g
I
0.798
SapurV1A.0118s0260
Salix purpurea
SapurV1A.0118s0260
I
0.798
SapurV1A.0693s0070
Salix purpurea
SapurV1A.0693s0070
I
0.798
SapurV1A.1950s0030
Salix purpurea
SapurV1A.1950s0030
I
0.798
PK27491.1
Cannabis sativa
PK27491.1
I
0.798
GLYMA06G44330
Glycine max
GLYMA06G44330
I
0.780
GLYMA12G13430
Glycine max
GLYMA12G13430
I
0.780
GLYMA12G33430
Glycine max
GLYMA12G33430
I
0.780
GLYMA13G37010
Glycine max
GLYMA13G37010
I
0.780
MTR_2g090675
Medicago truncatula
MTR_2g090675
I
0.780
PGSC0003DMG400009378
Solanum tuberosum
PGSC0003DMG400009378
I
0.780
Solyc07g053630.2
Solanum lycopersicum
Solyc07g053630.2
I
0.780
GPRI1
Vitis vinifera
VIT_12s0028g03100
I
0.780
Ca_02452
Cicer arietinum
Ca_02452
I
0.780
Ca_11268
Cicer arietinum
Ca_11268
I
0.780
GPRI1
Arabidopsis thaliana
AT2G20570
D
0.777
GPRI1
Arabidopsis lyrata
fgenesh2_kg.3__3588__AT2G20570.1
I
0.777
Cla003791
Citrullus lanatus
Cla003791
I
0.777
Cucsa.087530
Cucumis sativus
Cucsa.087530
I
0.777
mgf004257m
Mimulus guttatus
mgf004257m
I
0.777
Bostr.7903s0106
Boechera stricta
Bostr.7903s0106
I
0.777
Cagra.2516s0014
Capsella grandiflora
Cagra.2516s0014
I
0.777
Carubv10014114m.g
Capsella rubella
Carubv10014114m.g
I
0.777
Lus10018649.g
Linum usitatissimum
Lus10018649.g
I
0.777
Lus10033642.g
Linum usitatissimum
Lus10033642.g
I
0.777
Lus10039883.g
Linum usitatissimum
Lus10039883.g
I
0.777
MTR_4g078810
Medicago truncatula
MTR_4g078810
I
0.769
Thhalv10001986m.g
Eutrema salsugineum
Thhalv10001986m.g
I
0.759
chr3.CM0160.680.nd
Lotus japonicus
chr3.CM0160.680.nd
I
0.759
Eucgr.K01056
Eucalyptus grandis
Eucgr.K01056
I
0.736
mgf007181m
Mimulus guttatus
mgf007181m
I
0.731
mgf012846m
Mimulus guttatus
mgf012846m
I
0.731
PDK_20s1585631g001
Phoenix dactylifera
PDK_20s1585631g001
I
0.727
PDK_20s1662851g001
Phoenix dactylifera
PDK_20s1662851g001
I
0.724
SELMODRAFT_428906
Selaginella moellendorffii
SELMODRAFT_428906
I
0.713
GSMUA_Achr10G26160_001
Musa acuminata
GSMUA_Achr10G26160_001
I
0.709
GSMUA_Achr7G11040_001
Musa acuminata
GSMUA_Achr7G11040_001
I
0.709
LPERR01G08320
Leersia perrieri
LPERR01G08320
I
0.709
OGLUM01G10130
Oryza glumaepatula
OGLUM01G10130
I
0.709
OMERI01G08840
Oryza meridionalis
OMERI01G08840
I
0.709
ONIVA01G11450
Oryza nivara
ONIVA01G11450
I
0.709
OPUNC01G08680
Oryza punctata
OPUNC01G08680
I
0.709
ORUFI01G09620
Oryza rufipogon
ORUFI01G09620
I
0.709
GLK2
Oryza sativa
OS01G0239000
I
0.709
Aquca_051_00026
Aquilegia coerulea
Aquca_051_00026
I
0.709
Eucgr.A01857
Eucalyptus grandis
Eucgr.A01857
I
0.709
Gorai.008G155000
Gossypium raimondii
Gorai.008G155000
I
0.709
Bo7g003410
Brassica oleracea
Bo7g003410
I
0.704
Bo8g102300
Brassica oleracea
Bo8g102300
I
0.704
Bra031129
Brassica rapa
Bra031129
I
0.704
mgf014879m
Mimulus guttatus
mgf014879m
I
0.703
Aquca_044_00072
Aquilegia coerulea
Aquca_044_00072
I
0.701
BRADI2G08287
Brachypodium distachyon
BRADI2G08287
I
0.697
TRAES3BF062500050CFD_g
Triticum aestivum
TRAES3BF062500050CFD_g
I
0.697
GRMZM2G087804
Zea mays
GRMZM2G087804
I
0.691
Sb03g000400
Sorghum bicolor
Sb03g000400
I
0.691
Pavir.Eb00063
Panicum virgatum
Pavir.Eb00063
I
0.691
GSMUA_Achr2G15250_001
Musa acuminata
GSMUA_Achr2G15250_001
I
0.688
Pavir.Ea00014
Panicum virgatum
Pavir.Ea00014
I
0.683
BGIOSGA022875
Oryza indica
BGIOSGA022875
I
0.679
BRADI1G43710
Brachypodium distachyon
BRADI1G43710
I
0.679
F775_20285
Aegilops tauschii
F775_20285
I
0.679
LPERR06G12880
Leersia perrieri
LPERR06G12880
I
0.679
MLOC_43537
Hordeum vulgare
MLOC_43537
I
0.679
OB06G22250
Oryza brachyantha
OB06G22250
I
0.679
OBART03G02540
Oryza barthii
OBART03G02540
I
0.679
OGLUM06G15080
Oryza glumaepatula
OGLUM06G15080
I
0.679
OMERI06G15340
Oryza meridionalis
OMERI06G15340
I
0.679
ONIVA06G16920
Oryza nivara
ONIVA06G16920
I
0.679
OPUNC06G13180
Oryza punctata
OPUNC06G13180
I
0.679
ORGLA06G0126200
Oryza glaberrima
ORGLA06G0126200
I
0.679
ORUFI06G15000
Oryza rufipogon
ORUFI06G15000
I
0.679
GLK1
Oryza sativa
OS06G0348800
I
0.679
Sb10g008400
Sorghum bicolor
Sb10g008400
I
0.679
Si001336m.g
Setaria italica
Si001336m.g
I
0.679
Si006400m.g
Setaria italica
Si006400m.g
I
0.679
Traes_7DL_58DDB90E3
Triticum aestivum
Traes_7DL_58DDB90E3
I
0.679
Pavir.Db01285
Panicum virgatum
Pavir.Db01285
I
0.679
GSMUA_Achr6G05850_001
Musa acuminata
GSMUA_Achr6G05850_001
I
0.678
Cla008926
Citrullus lanatus
Cla008926
I
0.678
Cucsa.321580
Cucumis sativus
Cucsa.321580
I
0.678
BGIOSGA002040
Oryza indica
BGIOSGA002040
I
0.676
MLOC_65876
Hordeum vulgare
MLOC_65876
I
0.676
ORGLA01G0079000
Oryza glaberrima
ORGLA01G0079000
I
0.676
Lus10040109.g
Linum usitatissimum
Lus10040109.g
I
0.664