CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gw1.12.455.1
(
Ostreococcus RCC809
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
gw1.12.455.1
T285054_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARR1
M02296_2.00
Arabidopsis thaliana
NDGATHYBNN
NNVRDATCHN
PBM
Weirauch et al.(2014)
pTH8257
0.690
0.702
ARR1
M02297_2.00
Arabidopsis thaliana
NAAGATHCKN
NMGDATCTTN
PBM
Weirauch et al.(2014)
pTH8590
0.690
0.702
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.12.455.1
Myb
4
54
RLVWTPELHAAFIRAVEKLGVKTAVPKAIMKIMNVDGLTRENVASHLQKYR
Links
Other
Myb/SANT
family TFs
Other
Ostreococcus RCC809
TFs
52 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
OSTLU_26838
Ostreococcus lucimarinus
OSTLU_26838
I
0.860
1200010147
Ostreococcus tauri
1200010147
I
0.796
e_gw1.42.55.1
Physcomitrella patens
e_gw1.42.55.1
I
0.729
Ciclev10007648m.g
Citrus clementina
Ciclev10007648m.g
I
0.717
orange1.1g005719m.g
Citrus sinensis
orange1.1g005719m.g
I
0.717
SELMODRAFT_447635
Selaginella moellendorffii
SELMODRAFT_447635
I
0.708
Lus10040780.g
Linum usitatissimum
Lus10040780.g
I
0.707
CHLREDRAFT_130971
Chlamydomonas reinhardtii
CHLREDRAFT_130971
I
0.705
gw1.49.140.1
Volvox carteri
gw1.49.140.1
N
0.705
gw1.15.242.1
Coccomyxa subellipsoidea C169
gw1.15.242.1
I
0.699
fgeneshCV_pg.C_scaffold_15000185
Chlorella vulgaris
fgeneshCV_pg.C_scaffold_15000185
I
0.699
gw1.31.134.1
Physcomitrella patens
gw1.31.134.1
I
0.695
PK09202.1
Cannabis sativa
PK09202.1
I
0.695
ARR1
Arabidopsis thaliana
AT3G16857
D
0.690
Bo1g055180
Brassica oleracea
Bo1g055180
I
0.690
Bo3g068550
Brassica oleracea
Bo3g068550
I
0.690
Bo5g123620
Brassica oleracea
Bo5g123620
I
0.690
Bo7g104190
Brassica oleracea
Bo7g104190
I
0.690
Bra001643
Brassica rapa
Bra001643
I
0.690
Bra012743
Brassica rapa
Bra012743
I
0.690
Bra022183
Brassica rapa
Bra022183
I
0.690
Bra033527
Brassica rapa
Bra033527
I
0.690
GSMUA_Achr9G16610_001
Musa acuminata
GSMUA_Achr9G16610_001
I
0.690
ARR2
Arabidopsis lyrata
scaffold_702902.1
I
0.690
Bostr.28625s0008
Boechera stricta
Bostr.28625s0008
I
0.690
Bostr.30275s0051
Boechera stricta
Bostr.30275s0051
I
0.690
Cagra.0053s0018
Capsella grandiflora
Cagra.0053s0018
I
0.690
Cagra.5497s0018
Capsella grandiflora
Cagra.5497s0018
I
0.690
Carubv10007581m.g
Capsella rubella
Carubv10007581m.g
I
0.690
Carubv10013107m.g
Capsella rubella
Carubv10013107m.g
I
0.690
Lus10016846.g
Linum usitatissimum
Lus10016846.g
I
0.690
Lus10037719.g
Linum usitatissimum
Lus10037719.g
I
0.690
Thhalv10024686m.g
Eutrema salsugineum
Thhalv10024686m.g
I
0.690
estExt_Genewise1.C_90203
Chlorella NC64A
estExt_Genewise1.C_90203
I
0.685
Bostr.0556s0001
Boechera stricta
Bostr.0556s0001
I
0.681
Ca_09080
Cicer arietinum
Ca_09080
I
0.679
29848.m004559
Ricinus communis
29848.m004559
I
0.679
Lus10005340.g
Linum usitatissimum
Lus10005340.g
I
0.679
Lus10041020.g
Linum usitatissimum
Lus10041020.g
I
0.679
SELMODRAFT_444702
Selaginella moellendorffii
SELMODRAFT_444702
I
0.669
AMTR_s00101p00128190
Amborella trichopoda
AMTR_s00101p00128190
I
0.661
GLYMA05G34516
Glycine max
GLYMA05G34516
I
0.661
POPTR_0006s03340
Populus trichocarpa
POPTR_0006s03340
I
0.661
POPTR_0016s03240
Populus trichocarpa
POPTR_0016s03240
I
0.661
SELMODRAFT_36646
Selaginella moellendorffii
SELMODRAFT_36646
I
0.661
gw1.104.128.1
Physcomitrella patens
gw1.104.128.1
I
0.661
gw1.27.80.1
Physcomitrella patens
gw1.27.80.1
I
0.661
gw1.29.164.1
Physcomitrella patens
gw1.29.164.1
I
0.661
gw1.29.165.1
Physcomitrella patens
gw1.29.165.1
I
0.661
EuGene.0600010100
Micromonas sp RCC299
EuGene.0600010100
I
0.661
SapurV1A.0159s0180
Salix purpurea
SapurV1A.0159s0180
I
0.661
SapurV1A.1916s0020
Salix purpurea
SapurV1A.1916s0020
I
0.661