Bostr.6251s0088 (Boechera stricta)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Bostr.6251s0088 T285879_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G38090
M07055_2.00 		Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN
NVNRDWNWRGATAARNWTVDD		 Dap-seq
OMalley et al.(2016)
At2g38090_col_a 		0.680 0.777
AT5G58900
M07146_2.00 		Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD		 Dap-seq
OMalley et al.(2016)
At5g58900_col_a 		0.668 0.766
AT5G58900
M07147_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a 		0.668 0.766
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.6251s0088.1.p Myb 147 194

Links

Other Myb/SANT family TFs
Other Boechera stricta TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.7888s0001 Capsella grandiflora Cagra.7888s0001 N 0.867
Carubv10001741m.g Capsella rubella Carubv10001741m.g N 0.867
Thhalv10014410m.g Eutrema salsugineum Thhalv10014410m.g I 0.862
AT5G01200 Arabidopsis thaliana AT5G01200 N 0.814
fgenesh1_pg.C_scaffold_6000079 Arabidopsis lyrata fgenesh1_pg.C_scaffold_6000079 N 0.801
Bo2g002350 Brassica oleracea Bo2g002350 I 0.775
Bra028892 Brassica rapa Bra028892 I 0.750
Bo4g187390 Brassica oleracea Bo4g187390 I 0.698
Bra017138 Brassica rapa Bra017138 I 0.698
Bo4g029810 Brassica oleracea Bo4g029810 I 0.687
Bra005139 Brassica rapa Bra005139 I 0.687
Bostr.23794s0264 Boechera stricta Bostr.23794s0264 I 0.687
Cagra.0090s0025 Capsella grandiflora Cagra.0090s0025 I 0.687
Carubv10023736m.g Capsella rubella Carubv10023736m.g I 0.687
evm.TU.supercontig_1130.1 Carica papaya evm.TU.supercontig_1130.1 I 0.687
Bra002610 Brassica rapa Bra002610 I 0.681
gene18815-v1.0-hybrid Fragaria vesca gene18815-v1.0-hybrid I 0.681
Thhalv10014270m.g Eutrema salsugineum Thhalv10014270m.g I 0.681
AT2G38090 Arabidopsis thaliana AT2G38090 D 0.680
Lus10028264.g Linum usitatissimum Lus10028264.g I 0.674
Bo9g135730 Brassica oleracea Bo9g135730 I 0.670
Lus10009884.g Linum usitatissimum Lus10009884.g I 0.669
AT5G58900 Arabidopsis thaliana AT5G58900 D 0.668
fgenesh2_kg.8__1829__AT5G58900.1 Arabidopsis lyrata fgenesh2_kg.8__1829__AT5G58900.1 I 0.668
PRUPE_ppa009103mg Prunus persica PRUPE_ppa009103mg I 0.668
Pm002536 Prunus mume Pm002536 I 0.668
Bostr.26833s0356 Boechera stricta Bostr.26833s0356 I 0.668
Cagra.0891s0087 Capsella grandiflora Cagra.0891s0087 I 0.668
Carubv10026903m.g Capsella rubella Carubv10026903m.g I 0.668
28288.m000014 Ricinus communis 28288.m000014 I 0.666
Lus10035518.g Linum usitatissimum Lus10035518.g I 0.666
Bo3g032160 Brassica oleracea Bo3g032160 I 0.663
Bra000038 Brassica rapa Bra000038 I 0.663
GLYMA18G42530 Glycine max GLYMA18G42530 I 0.661
MDP0000142580 Malus domestica MDP0000142580 I 0.661