CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bostr.6864s0236
(
Boechera stricta
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Bostr.6864s0236
T285882_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
F3A4.140
M02299_2.00
Arabidopsis thaliana
YAACBGYY
RRCVGTTR
PBM
Weirauch et al.(2014)
pTH7112
0.876
0.978
F3A4.140
M07095_2.00
Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA
Dap-seq
OMalley et al.(2016)
MYB77_col_a
0.876
0.978
F3A4.140
M07096_2.00
Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT
Dap-seq
OMalley et al.(2016)
MYB77_colamp_a
0.876
0.978
F3A4.140
M02701_2.00
Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS
SELEX
Mathelier et al.(2014)
MA0575.1
0.876
0.978
F3A4.140
M11044_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATMYB77_01
0.876
0.978
MYB44
M01082_2.00
Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH7078
0.803
0.892
MYB44
M07155_2.00
Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD
Dap-seq
OMalley et al.(2016)
MYB44_colamp_a
0.803
0.892
MYB44
M07156_2.00
Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD
Dap-seq
OMalley et al.(2016)
MYB44_col
0.803
0.892
MYB73
M07114_2.00
Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA
Dap-seq
OMalley et al.(2016)
MYB73_col_a
0.742
0.828
PK28565.1
M02357_2.00
Cannabis sativa
TAACBGTY
RACVGTTA
PBM
Weirauch et al.(2014)
pTH9653
0.738
0.817
AtMYB70
M01071_2.00
Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH8588
0.738
0.806
AtMYB70
M07048_2.00
Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR
Dap-seq
OMalley et al.(2016)
MYB70_col_a
0.738
0.806
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.6864s0236.1.p
Myb
6
52
KGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQL
Bostr.6864s0236.1.p
Myb
58
103
HRPFSPEEDETILTARAKFGNKWATIARLLNGRTDNAVKNHWNSTL
Links
Other
Myb/SANT
family TFs
Other
Boechera stricta
TFs
236 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo8g079430
Brassica oleracea
Bo8g079430
I
0.906
MYB77
Arabidopsis lyrata
fgenesh2_kg.5__1356__AT3G50060.1
I
0.906
Cagra.1549s0005
Capsella grandiflora
Cagra.1549s0005
I
0.906
Carubv10019440m.g
Capsella rubella
Carubv10019440m.g
I
0.906
Thhalv10010581m.g
Eutrema salsugineum
Thhalv10010581m.g
I
0.906
Bra036048
Brassica rapa
Bra036048
I
0.882
F3A4.140
Arabidopsis thaliana
AT3G50060
D
0.876
Bo7g099180
Brassica oleracea
Bo7g099180
I
0.867
Bra012910
Brassica rapa
Bra012910
I
0.867
Bra029990
Brassica rapa
Bra029990
I
0.815
Bo1g082480
Brassica oleracea
Bo1g082480
I
0.808
MYB44
Arabidopsis thaliana
AT5G67300
D
0.803
Bo7g063830
Brassica oleracea
Bo7g063830
I
0.803
Bra012149
Brassica rapa
Bra012149
I
0.803
ATMYBR1
Arabidopsis lyrata
scaffold_803378.1
I
0.803
Bostr.0568s0154
Boechera stricta
Bostr.0568s0154
I
0.803
Cagra.0342s0017
Capsella grandiflora
Cagra.0342s0017
I
0.803
Carubv10027659m.g
Capsella rubella
Carubv10027659m.g
I
0.803
Thhalv10004676m.g
Eutrema salsugineum
Thhalv10004676m.g
I
0.803
Bo2g167960
Brassica oleracea
Bo2g167960
I
0.785
Aquca_007_00776
Aquilegia coerulea
Aquca_007_00776
I
0.779
mgf014089m
Mimulus guttatus
mgf014089m
I
0.775
PGSC0003DMG400024983
Solanum tuberosum
PGSC0003DMG400024983
I
0.773
Solyc02g092930.1
Solanum lycopersicum
Solyc02g092930.1
I
0.773
cassava43120.valid.m1
Manihot esculenta
cassava43120.valid.m1
I
0.773
Gorai.007G218100
Gossypium raimondii
Gorai.007G218100
I
0.773
SapurV1A.0597s0060
Salix purpurea
SapurV1A.0597s0060
I
0.769
cassava2215.valid.m1
Manihot esculenta
cassava2215.valid.m1
I
0.767
AMTR_s00006p00225600
Amborella trichopoda
AMTR_s00006p00225600
I
0.764
TCM_000696
Theobroma cacao
TCM_000696
I
0.764
29970.m000987
Ricinus communis
29970.m000987
I
0.764
Gorai.007G055600
Gossypium raimondii
Gorai.007G055600
I
0.764
PGSC0003DMG400003316
Solanum tuberosum
PGSC0003DMG400003316
I
0.763
Solyc04g078420.1
Solanum lycopersicum
Solyc04g078420.1
I
0.763
Cla014191
Citrullus lanatus
Cla014191
I
0.763
Cucsa.102710
Cucumis sativus
Cucsa.102710
I
0.763
PK17282.1
Cannabis sativa
PK17282.1
I
0.762
GLYMA14G09540
Glycine max
GLYMA14G09540
I
0.761
30170.m013698
Ricinus communis
30170.m013698
I
0.759
cassava47374.m1
Manihot esculenta
cassava47374.m1
I
0.759
SapurV1A.0339s0020
Salix purpurea
SapurV1A.0339s0020
I
0.759
Thhalv10025742m.g
Eutrema salsugineum
Thhalv10025742m.g
I
0.759
TCM_007138
Theobroma cacao
TCM_007138
I
0.757
Gorai.005G234900
Gossypium raimondii
Gorai.005G234900
I
0.757
evm.TU.supercontig_6.98
Carica papaya
evm.TU.supercontig_6.98
I
0.756
PRUPE_ppa008450mg
Prunus persica
PRUPE_ppa008450mg
I
0.755
MDP0000196986
Malus domestica
MDP0000196986
I
0.755
MDP0000232454
Malus domestica
MDP0000232454
I
0.755
Cla020946
Citrullus lanatus
Cla020946
I
0.753
PRUPE_ppa008979mg
Prunus persica
PRUPE_ppa008979mg
I
0.750
Pm005332
Prunus mume
Pm005332
I
0.750
MDP0000463846
Malus domestica
MDP0000463846
I
0.750
Bo3g153550
Brassica oleracea
Bo3g153550
I
0.749
GSMUA_Achr4G20150_001
Musa acuminata
GSMUA_Achr4G20150_001
I
0.749
Ciclev10026107m.g
Citrus clementina
Ciclev10026107m.g
I
0.749
orange1.1g021071m.g
Citrus sinensis
orange1.1g021071m.g
I
0.749
Bostr.27895s0157
Boechera stricta
Bostr.27895s0157
I
0.747
MDP0000275800
Malus domestica
MDP0000275800
I
0.746
GSMUA_Achr1G26140_001
Musa acuminata
GSMUA_Achr1G26140_001
I
0.745
MTR_5g016510
Medicago truncatula
MTR_5g016510
I
0.745
VIT_18s0001g09850
Vitis vinifera
VIT_18s0001g09850
I
0.745
Ca_02182
Cicer arietinum
Ca_02182
I
0.745
Cla006872
Citrullus lanatus
Cla006872
I
0.745
Eucgr.F00002
Eucalyptus grandis
Eucgr.F00002
I
0.745
gene00185-v1.0-hybrid
Fragaria vesca
gene00185-v1.0-hybrid
I
0.745
GLYMA17G35620
Glycine max
GLYMA17G35620
I
0.743
Gorai.010G023500
Gossypium raimondii
Gorai.010G023500
I
0.743
MYB73
Arabidopsis thaliana
AT4G37260
D
0.742
Bo1g004900
Brassica oleracea
Bo1g004900
I
0.742
Bra011749
Brassica rapa
Bra011749
I
0.742
Bostr.7867s1585
Boechera stricta
Bostr.7867s1585
I
0.742
Cagra.1232s0025
Capsella grandiflora
Cagra.1232s0025
I
0.742
Carubv10007638m.g
Capsella rubella
Carubv10007638m.g
I
0.742
Ciclev10001979m.g
Citrus clementina
Ciclev10001979m.g
I
0.742
evm.TU.supercontig_21.145
Carica papaya
evm.TU.supercontig_21.145
I
0.742
Gorai.009G215900
Gossypium raimondii
Gorai.009G215900
I
0.742
orange1.1g022144m.g
Citrus sinensis
orange1.1g022144m.g
I
0.742
Thhalv10000438m.g
Eutrema salsugineum
Thhalv10000438m.g
I
0.741
GSMUA_Achr3G13070_001
Musa acuminata
GSMUA_Achr3G13070_001
I
0.740
Bo4g151410
Brassica oleracea
Bo4g151410
I
0.739
AtMYB70
Arabidopsis thaliana
AT2G23290
D
0.738
Bra010593
Brassica rapa
Bra010593
I
0.738
AtMYB70
Arabidopsis lyrata
fgenesh2_kg.4__260__AT2G23290.1
I
0.738
Cla022947
Citrullus lanatus
Cla022947
I
0.738
Cucsa.395890
Cucumis sativus
Cucsa.395890
I
0.738
PK28565.1
Cannabis sativa
PK28565.1
D
0.738
Cucsa.352560
Cucumis sativus
Cucsa.352560
I
0.736
POPTR_0014s02260
Populus trichocarpa
POPTR_0014s02260
I
0.733
SapurV1A.0919s0160
Salix purpurea
SapurV1A.0919s0160
I
0.733
SapurV1A.1934s0020
Salix purpurea
SapurV1A.1934s0020
I
0.733
GSMUA_Achr9G22600_001
Musa acuminata
GSMUA_Achr9G22600_001
I
0.732
e_gw1.9.342.1
Physcomitrella patens
e_gw1.9.342.1
I
0.729
GLYMA01G39740
Glycine max
GLYMA01G39740
I
0.728
GLYMA11G05550
Glycine max
GLYMA11G05550
I
0.728
mgf002573m
Mimulus guttatus
mgf002573m
I
0.728
Aquca_083_00054
Aquilegia coerulea
Aquca_083_00054
I
0.728
Lus10030336.g
Linum usitatissimum
Lus10030336.g
I
0.728
chr2.CM0250.240.nd
Lotus japonicus
chr2.CM0250.240.nd
I
0.728
gene24027-v1.0-hybrid
Fragaria vesca
gene24027-v1.0-hybrid
I
0.727
Eucgr.H02226
Eucalyptus grandis
Eucgr.H02226
I
0.723
GLYMA05G21220
Glycine max
GLYMA05G21220
I
0.720
Cucsa.073130
Cucumis sativus
Cucsa.073130
I
0.720
VIT_07s0129g01050
Vitis vinifera
VIT_07s0129g01050
I
0.719
Lus10010260.g
Linum usitatissimum
Lus10010260.g
I
0.719
POPTR_0007s10490
Populus trichocarpa
POPTR_0007s10490
I
0.716
Gorai.009G275100
Gossypium raimondii
Gorai.009G275100
I
0.716
CM0528.210.nd
Lotus japonicus
CM0528.210.nd
I
0.715
Bra032176
Brassica rapa
Bra032176
I
0.714
Carubv10023692m.g
Capsella rubella
Carubv10023692m.g
I
0.714
chr5.CM0096.100.nc
Lotus japonicus
chr5.CM0096.100.nc
I
0.712
GSMUA_Achr3G28230_001
Musa acuminata
GSMUA_Achr3G28230_001
I
0.711
POPTR_0005s18620
Populus trichocarpa
POPTR_0005s18620
I
0.710
POPTR_0002s12410
Populus trichocarpa
POPTR_0002s12410
I
0.708
SapurV1A.0167s0310
Salix purpurea
SapurV1A.0167s0310
I
0.708
Bo7g118450
Brassica oleracea
Bo7g118450
I
0.707
GLYMA04G04490
Glycine max
GLYMA04G04490
I
0.704
POPTR_0009s09890
Populus trichocarpa
POPTR_0009s09890
I
0.704
POPTR_0014s03440
Populus trichocarpa
POPTR_0014s03440
I
0.703
PRUPE_ppa023154mg
Prunus persica
PRUPE_ppa023154mg
I
0.703
Pm021211
Prunus mume
Pm021211
I
0.703
cassava46434.m1
Manihot esculenta
cassava46434.m1
I
0.703
evm.TU.supercontig_376.4
Carica papaya
evm.TU.supercontig_376.4
I
0.703
Gorai.012G149000
Gossypium raimondii
Gorai.012G149000
I
0.703
MDP0000187872
Malus domestica
MDP0000187872
I
0.703
SapurV1A.0017s0390
Salix purpurea
SapurV1A.0017s0390
I
0.703
Ca_01522
Cicer arietinum
Ca_01522
I
0.700
BGIOSGA018238
Oryza indica
BGIOSGA018238
I
0.699
OGLUM05G13590
Oryza glumaepatula
OGLUM05G13590
I
0.699
OMERI05G11510
Oryza meridionalis
OMERI05G11510
I
0.699
ONIVA05G13470
Oryza nivara
ONIVA05G13470
I
0.699
OPUNC05G11020
Oryza punctata
OPUNC05G11020
I
0.699
ORGLA05G0109400
Oryza glaberrima
ORGLA05G0109400
I
0.699
ORUFI05G13850
Oryza rufipogon
ORUFI05G13850
I
0.699
Lus10010238.g
Linum usitatissimum
Lus10010238.g
I
0.699
GSMUA_Achr4G09450_001
Musa acuminata
GSMUA_Achr4G09450_001
I
0.698
Gorai.009G276400
Gossypium raimondii
Gorai.009G276400
I
0.696
Lus10014103.g
Linum usitatissimum
Lus10014103.g
I
0.696
30170.m013927
Ricinus communis
30170.m013927
I
0.694
cassava16103.m1
Manihot esculenta
cassava16103.m1
I
0.694
Ciclev10002239m.g
Citrus clementina
Ciclev10002239m.g
I
0.694
orange1.1g025351m.g
Citrus sinensis
orange1.1g025351m.g
I
0.694
cassava41257.m1
Manihot esculenta
cassava41257.m1
I
0.693
gw1.10.6.1
Physcomitrella patens
gw1.10.6.1
I
0.690
BGIOSGA030245
Oryza indica
BGIOSGA030245
I
0.689
GSMUA_Achr8G25220_001
Musa acuminata
GSMUA_Achr8G25220_001
I
0.689
GSMUA_AchrUn_randomG01280_001
Musa acuminata
GSMUA_AchrUn_randomG01280_001
I
0.689
OB09G10200
Oryza brachyantha
OB09G10200
I
0.689
OBART09G00310
Oryza barthii
OBART09G00310
I
0.689
OGLUM09G00340
Oryza glumaepatula
OGLUM09G00340
I
0.689
OMERI08G05160
Oryza meridionalis
OMERI08G05160
I
0.689
ONIVA09G00250
Oryza nivara
ONIVA09G00250
I
0.689
OPUNC12G06260
Oryza punctata
OPUNC12G06260
I
0.689
ORGLA09G0002900
Oryza glaberrima
ORGLA09G0002900
I
0.689
ORUFI09G00360
Oryza rufipogon
ORUFI09G00360
I
0.689
OS09G0106700
Oryza sativa
OS09G0106700
I
0.689
VIT_03s0180g00210
Vitis vinifera
VIT_03s0180g00210
I
0.689
BGIOSGA018239
Oryza indica
BGIOSGA018239
I
0.687
Bra017813
Brassica rapa
Bra017813
I
0.686
PRUPE_ppa010735mg
Prunus persica
PRUPE_ppa010735mg
I
0.686
Pm005220
Prunus mume
Pm005220
I
0.686
mgf023922m
Mimulus guttatus
mgf023922m
I
0.686
MDP0000894463
Malus domestica
MDP0000894463
I
0.686
Sb02g013010
Sorghum bicolor
Sb02g013010
I
0.685
Si032789m.g
Setaria italica
Si032789m.g
I
0.685
Gorai.002G009300
Gossypium raimondii
Gorai.002G009300
I
0.685
Pavir.Ba03084
Panicum virgatum
Pavir.Ba03084
I
0.685
Lus10021762.g
Linum usitatissimum
Lus10021762.g
I
0.684
GLYMA04G03910
Glycine max
GLYMA04G03910
I
0.683
cassava8939.m1
Manihot esculenta
cassava8939.m1
I
0.681
Aquca_009_00809
Aquilegia coerulea
Aquca_009_00809
I
0.681
LPERR09G00910
Leersia perrieri
LPERR09G00910
I
0.680
MLOC_64817
Hordeum vulgare
MLOC_64817
I
0.680
Traes_5BL_486D0D865
Triticum aestivum
Traes_5BL_486D0D865
I
0.680
Traes_5DL_92CBBE968
Triticum aestivum
Traes_5DL_92CBBE968
I
0.680
SapurV1A.0708s0130
Salix purpurea
SapurV1A.0708s0130
I
0.679
MYB109
Arabidopsis thaliana
AT3G55730
I
0.677
Bra007186
Brassica rapa
Bra007186
I
0.677
MTR_4g094982
Medicago truncatula
MTR_4g094982
I
0.677
Gorai.009G208900
Gossypium raimondii
Gorai.009G208900
I
0.677
Lus10032764.g
Linum usitatissimum
Lus10032764.g
I
0.677
BRADI4G08220
Brachypodium distachyon
BRADI4G08220
I
0.676
GSMUA_Achr1G09750_001
Musa acuminata
GSMUA_Achr1G09750_001
I
0.676
gene26289-v1.0-hybrid
Fragaria vesca
gene26289-v1.0-hybrid
I
0.675
GLYMA06G04010
Glycine max
GLYMA06G04010
I
0.674
29801.m003096
Ricinus communis
29801.m003096
I
0.674
PK16550.1
Cannabis sativa
PK16550.1
I
0.674
GSMUA_Achr4G12950_001
Musa acuminata
GSMUA_Achr4G12950_001
I
0.672
chr2.CM0002.110.nc
Lotus japonicus
chr2.CM0002.110.nc
I
0.672
POPTR_0002s13030
Populus trichocarpa
POPTR_0002s13030
I
0.671
MDP0000477900
Malus domestica
MDP0000477900
I
0.671
MDP0000480596
Malus domestica
MDP0000480596
I
0.671
MDP0000641708
Malus domestica
MDP0000641708
I
0.671
MDP0000784297
Malus domestica
MDP0000784297
I
0.671
MDP0000823270
Malus domestica
MDP0000823270
I
0.671
BGIOSGA000485
Oryza indica
BGIOSGA000485
I
0.670
LPERR01G32110
Leersia perrieri
LPERR01G32110
I
0.670
OB01G46120
Oryza brachyantha
OB01G46120
I
0.670
OBART01G37390
Oryza barthii
OBART01G37390
I
0.670
OGLUM01G41330
Oryza glumaepatula
OGLUM01G41330
I
0.670
OLONG_001357
Oryza longistaminata
OLONG_001357
I
0.670
OMERI01G34370
Oryza meridionalis
OMERI01G34370
I
0.670
ONIVA01G42300
Oryza nivara
ONIVA01G42300
I
0.670
OPUNC01G36300
Oryza punctata
OPUNC01G36300
I
0.670
ORGLA01G0312200
Oryza glaberrima
ORGLA01G0312200
I
0.670
ORUFI01G40770
Oryza rufipogon
ORUFI01G40770
I
0.670
OS01G0850400
Oryza sativa
OS01G0850400
I
0.670
TCM_042474
Theobroma cacao
TCM_042474
I
0.669
Bostr.23794s0078
Boechera stricta
Bostr.23794s0078
I
0.669
Cagra.10445s0001
Capsella grandiflora
Cagra.10445s0001
I
0.669
Carubv10023414m.g
Capsella rubella
Carubv10023414m.g
I
0.669
Bo8g090160
Brassica oleracea
Bo8g090160
I
0.668
GRMZM2G050550
Zea mays
GRMZM2G050550
I
0.668
PGSC0003DMG400007994
Solanum tuberosum
PGSC0003DMG400007994
I
0.668
POPTR_0008s07100
Populus trichocarpa
POPTR_0008s07100
I
0.668
Solyc04g079360.1
Solanum lycopersicum
Solyc04g079360.1
I
0.668
29814.m000736
Ricinus communis
29814.m000736
I
0.668
Aquca_045_00169
Aquilegia coerulea
Aquca_045_00169
I
0.668
Bostr.20505s0177
Boechera stricta
Bostr.20505s0177
I
0.668
gene21001-v1.0-hybrid
Fragaria vesca
gene21001-v1.0-hybrid
I
0.668
Thhalv10010431m.g
Eutrema salsugineum
Thhalv10010431m.g
I
0.668
mgf025567m
Mimulus guttatus
mgf025567m
I
0.666
Ciclev10029124m.g
Citrus clementina
Ciclev10029124m.g
I
0.665
orange1.1g040502m.g
Citrus sinensis
orange1.1g040502m.g
I
0.665
MYB25
Arabidopsis lyrata
Al_scaffold_0004_2572
I
0.663
Ca_12468
Cicer arietinum
Ca_12468
I
0.663
Lus10007503.g
Linum usitatissimum
Lus10007503.g
I
0.663
Lus10028979.g
Linum usitatissimum
Lus10028979.g
I
0.663
Cla021015
Citrullus lanatus
Cla021015
I
0.662
Cucsa.123440
Cucumis sativus
Cucsa.123440
I
0.662
gene09039-v1.0-hybrid
Fragaria vesca
gene09039-v1.0-hybrid
I
0.662
Thhalv10016794m.g
Eutrema salsugineum
Thhalv10016794m.g
I
0.662
AMTR_s00029p00183640
Amborella trichopoda
AMTR_s00029p00183640
I
0.661
SELMODRAFT_103999
Selaginella moellendorffii
SELMODRAFT_103999
I
0.661
SELMODRAFT_99462
Selaginella moellendorffii
SELMODRAFT_99462
I
0.661
Bostr.22252s0145
Boechera stricta
Bostr.22252s0145
I
0.661
Eucgr.K03010
Eucalyptus grandis
Eucgr.K03010
I
0.661