CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0084s0008
(
Capsella grandiflora
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cagra.0084s0008
T285932_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q2TCH0_PETHY
M11072_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PH4_01
0.690
0.677
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0084s0008.1.p
Myb
13
60
RGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCRLRWKNYL
Cagra.0084s0008.1.p
Myb
66
111
RGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHL
Links
Other
Myb/SANT
family TFs
Other
Capsella grandiflora
TFs
173 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
F775_26191
Aegilops tauschii
F775_26191
I
0.666
AMTR_s00024p00224180
Amborella trichopoda
AMTR_s00024p00224180
I
0.696
AMTR_s00024p00224470
Amborella trichopoda
AMTR_s00024p00224470
I
0.690
AMTR_s00024p00224850
Amborella trichopoda
AMTR_s00024p00224850
I
0.699
AMTR_s00068p00092800
Amborella trichopoda
AMTR_s00068p00092800
I
0.673
AMTR_s00068p00097220
Amborella trichopoda
AMTR_s00068p00097220
I
0.673
AMTR_s00068p00099460
Amborella trichopoda
AMTR_s00068p00099460
I
0.683
Aquca_009_00493
Aquilegia coerulea
Aquca_009_00493
I
0.692
AtMYB82
Arabidopsis lyrata
Al_scaffold_0008_1642
I
0.888
TT2
Arabidopsis lyrata
fgenesh2_kg.7__3049__AT5G35550.1
I
0.684
TT2
Arabidopsis thaliana
AT5G35550
I
0.684
MYB82
Arabidopsis thaliana
AT5G52600
I
0.909
Bostr.29044s0068
Boechera stricta
Bostr.29044s0068
I
0.684
Bostr.7305s0011
Boechera stricta
Bostr.7305s0011
I
0.904
Bo1g138250
Brassica oleracea
Bo1g138250
I
0.661
Bo2g047590
Brassica oleracea
Bo2g047590
I
0.890
Bo3g023140
Brassica oleracea
Bo3g023140
I
0.839
Bra022602
Brassica rapa
Bra022602
I
0.880
Bra029113
Brassica rapa
Bra029113
I
0.839
Bra039395
Brassica rapa
Bra039395
I
0.664
PK01088.1
Cannabis sativa
PK01088.1
I
0.832
PK14784.1
Cannabis sativa
PK14784.1
I
0.673
PK16315.1
Cannabis sativa
PK16315.1
I
0.673
Cagra.5428s0005
Capsella grandiflora
Cagra.5428s0005
I
0.684
Carubv10006684m.g
Capsella rubella
Carubv10006684m.g
I
0.684
Carubv10028642m.g
Capsella rubella
Carubv10028642m.g
I
0.909
evm.TU.supercontig_119.55
Carica papaya
evm.TU.supercontig_119.55
I
0.666
evm.TU.supercontig_46.32
Carica papaya
evm.TU.supercontig_46.32
I
0.849
Ca_01329
Cicer arietinum
Ca_01329
I
0.704
Ca_17627
Cicer arietinum
Ca_17627
I
0.670
Cla016951
Citrullus lanatus
Cla016951
I
0.835
Ciclev10015648m.g
Citrus clementina
Ciclev10015648m.g
I
0.675
Ciclev10021571m.g
Citrus clementina
Ciclev10021571m.g
I
0.673
orange1.1g036215m.g
Citrus sinensis
orange1.1g036215m.g
I
0.685
orange1.1g040726m.g
Citrus sinensis
orange1.1g040726m.g
I
0.675
orange1.1g040841m.g
Citrus sinensis
orange1.1g040841m.g
I
0.673
Cucsa.132300
Cucumis sativus
Cucsa.132300
N
0.811
Eucgr.A02110
Eucalyptus grandis
Eucgr.A02110
I
0.685
Eucgr.B00866
Eucalyptus grandis
Eucgr.B00866
I
0.685
Eucgr.B03606
Eucalyptus grandis
Eucgr.B03606
I
0.675
Eucgr.C00721
Eucalyptus grandis
Eucgr.C00721
I
0.666
Eucgr.C00724
Eucalyptus grandis
Eucgr.C00724
I
0.688
Eucgr.C00826
Eucalyptus grandis
Eucgr.C00826
I
0.668
Eucgr.C01374
Eucalyptus grandis
Eucgr.C01374
I
0.879
Eucgr.C02096
Eucalyptus grandis
Eucgr.C02096
I
0.677
Eucgr.C03151
Eucalyptus grandis
Eucgr.C03151
I
0.694
Eucgr.C03555
Eucalyptus grandis
Eucgr.C03555
I
0.664
Eucgr.D02390
Eucalyptus grandis
Eucgr.D02390
I
0.673
Eucgr.E01031
Eucalyptus grandis
Eucgr.E01031
I
0.671
Eucgr.K01504
Eucalyptus grandis
Eucgr.K01504
I
0.710
Thhalv10014754m.g
Eutrema salsugineum
Thhalv10014754m.g
I
0.883
gene07416-v1.0-hybrid
Fragaria vesca
gene07416-v1.0-hybrid
I
0.661
gene15390-v1.0-hybrid
Fragaria vesca
gene15390-v1.0-hybrid
I
0.691
gene18691-v1.0-hybrid
Fragaria vesca
gene18691-v1.0-hybrid
I
0.673
gene31098-v1.0-hybrid
Fragaria vesca
gene31098-v1.0-hybrid
I
0.846
GLYMA07G05960
Glycine max
GLYMA07G05960
I
0.684
GLYMA10G35050
Glycine max
GLYMA10G35050
I
0.739
GLYMA10G35061
Glycine max
GLYMA10G35061
I
0.662
GLYMA13G09980
Glycine max
GLYMA13G09980
I
0.675
GLYMA13G16890
Glycine max
GLYMA13G16890
I
0.683
GLYMA14G24500
Glycine max
GLYMA14G24500
I
0.675
GLYMA16G02570
Glycine max
GLYMA16G02570
I
0.684
GLYMA17G05831
Glycine max
GLYMA17G05831
I
0.683
GLYMA19G44660
Glycine max
GLYMA19G44660
I
0.731
GLYMA20G32500
Glycine max
GLYMA20G32500
I
0.691
GLYMA20G32510
Glycine max
GLYMA20G32510
I
0.718
Gorai.001G044000
Gossypium raimondii
Gorai.001G044000
I
0.858
Gorai.004G044000
Gossypium raimondii
Gorai.004G044000
I
0.661
Gorai.004G150800
Gossypium raimondii
Gorai.004G150800
I
0.694
Gorai.004G276500
Gossypium raimondii
Gorai.004G276500
N
0.832
Gorai.007G260600
Gossypium raimondii
Gorai.007G260600
I
0.675
Gorai.007G350500
Gossypium raimondii
Gorai.007G350500
I
0.675
Gorai.008G126700
Gossypium raimondii
Gorai.008G126700
I
0.673
Gorai.010G087200
Gossypium raimondii
Gorai.010G087200
I
0.666
Lus10013762.g
Linum usitatissimum
Lus10013762.g
I
0.682
Lus10039173.g
Linum usitatissimum
Lus10039173.g
I
0.703
chr1.CM0105.50.nd
Lotus japonicus
chr1.CM0105.50.nd
I
0.699
LjSGA_023691.1
Lotus japonicus
LjSGA_023691.1
I
0.699
MDP0000031172
Malus domestica
MDP0000031172
I
0.663
MDP0000167314
Malus domestica
MDP0000167314
I
0.828
MDP0000210851
Malus domestica
MDP0000210851
I
0.663
MDP0000264051
Malus domestica
MDP0000264051
I
0.850
MDP0000655330
Malus domestica
MDP0000655330
I
0.675
MDP0000723614
Malus domestica
MDP0000723614
I
0.675
MDP0000791870
Malus domestica
MDP0000791870
I
0.666
MDP0000915330
Malus domestica
MDP0000915330
I
0.673
cassava28702.m1
Manihot esculenta
cassava28702.m1
I
0.677
cassava29820.valid.m1
Manihot esculenta
cassava29820.valid.m1
I
0.743
cassava32672.m1
Manihot esculenta
cassava32672.m1
I
0.838
cassava34176.m1
Manihot esculenta
cassava34176.m1
I
0.661
cassava36364.valid.m1
Manihot esculenta
cassava36364.valid.m1
I
0.668
cassava36365.valid.m1
Manihot esculenta
cassava36365.valid.m1
I
0.670
cassava6348.valid.m1
Manihot esculenta
cassava6348.valid.m1
I
0.675
cassava7672.valid.m1
Manihot esculenta
cassava7672.valid.m1
I
0.669
cassava9274.m1
Manihot esculenta
cassava9274.m1
I
0.675
MTR_4g125520
Medicago truncatula
MTR_4g125520
I
0.669
MTR_7g117730
Medicago truncatula
MTR_7g117730
I
0.687
mgf023205m
Mimulus guttatus
mgf023205m
I
0.781
GSMUA_Achr3G07940_001
Musa acuminata
GSMUA_Achr3G07940_001
I
0.705
GSMUA_Achr3G07950_001
Musa acuminata
GSMUA_Achr3G07950_001
I
0.696
GSMUA_Achr4G23690_001
Musa acuminata
GSMUA_Achr4G23690_001
I
0.662
GSMUA_Achr6G04400_001
Musa acuminata
GSMUA_Achr6G04400_001
I
0.699
GSMUA_Achr8G22690_001
Musa acuminata
GSMUA_Achr8G22690_001
I
0.696
Q2TCH0_PETHY
Petunia x hybrida
Q2TCH0_PETHY
D
0.690
PDK_20s1310471g002
Phoenix dactylifera
PDK_20s1310471g002
I
0.709
PDK_20s1554342g001
Phoenix dactylifera
PDK_20s1554342g001
I
0.705
PDK_20s1716541g001
Phoenix dactylifera
PDK_20s1716541g001
I
0.675
PDK_20s1918041g001
Phoenix dactylifera
PDK_20s1918041g001
I
0.703
e_gw1.61.201.1
Physcomitrella patens
e_gw1.61.201.1
I
0.661
POPTR_0002s17460
Populus trichocarpa
POPTR_0002s17460
I
0.698
POPTR_0003s21120
Populus trichocarpa
POPTR_0003s21120
I
0.666
POPTR_0006s06530
Populus trichocarpa
POPTR_0006s06530
N
0.795
POPTR_0006s23810
Populus trichocarpa
POPTR_0006s23810
I
0.724
POPTR_0006s23840
Populus trichocarpa
POPTR_0006s23840
I
0.663
POPTR_0013s05300
Populus trichocarpa
POPTR_0013s05300
I
0.666
POPTR_0013s05310
Populus trichocarpa
POPTR_0013s05310
I
0.699
POPTR_0014s09630
Populus trichocarpa
POPTR_0014s09630
I
0.695
POPTR_0018s05530
Populus trichocarpa
POPTR_0018s05530
I
0.714
POPTR_0018s05740
Populus trichocarpa
POPTR_0018s05740
I
0.683
POPTR_0018s05750
Populus trichocarpa
POPTR_0018s05750
I
0.689
POPTR_0018s12780
Populus trichocarpa
POPTR_0018s12780
N
0.807
Pm005570
Prunus mume
Pm005570
I
0.663
Pm005572
Prunus mume
Pm005572
I
0.667
Pm018338
Prunus mume
Pm018338
I
0.670
Pm027047
Prunus mume
Pm027047
I
0.669
Pm027586
Prunus mume
Pm027586
I
0.846
Pm029489
Prunus mume
Pm029489
I
0.708
PRUPE_ppa006730mg
Prunus persica
PRUPE_ppa006730mg
I
0.675
PRUPE_ppa009439mg
Prunus persica
PRUPE_ppa009439mg
I
0.670
PRUPE_ppa016532mg
Prunus persica
PRUPE_ppa016532mg
I
0.835
PRUPE_ppa019380mg
Prunus persica
PRUPE_ppa019380mg
I
0.707
PRUPE_ppa022205mg
Prunus persica
PRUPE_ppa022205mg
I
0.663
PRUPE_ppa023768mg
Prunus persica
PRUPE_ppa023768mg
I
0.667
PRUPE_ppa024074mg
Prunus persica
PRUPE_ppa024074mg
I
0.669
SapurV1A.0003s0900
Salix purpurea
SapurV1A.0003s0900
I
0.698
SapurV1A.0013s0160
Salix purpurea
SapurV1A.0013s0160
I
0.695
SapurV1A.0034s0330
Salix purpurea
SapurV1A.0034s0330
N
0.782
SapurV1A.0081s0400
Salix purpurea
SapurV1A.0081s0400
I
0.666
SapurV1A.0197s0090
Salix purpurea
SapurV1A.0197s0090
N
0.762
SapurV1A.0553s0100
Salix purpurea
SapurV1A.0553s0100
I
0.671
SapurV1A.0553s0110
Salix purpurea
SapurV1A.0553s0110
I
0.671
SapurV1A.0710s0050
Salix purpurea
SapurV1A.0710s0050
I
0.726
SapurV1A.0710s0070
Salix purpurea
SapurV1A.0710s0070
I
0.663
SapurV1A.1276s0050
Salix purpurea
SapurV1A.1276s0050
I
0.675
SapurV1A.1276s0060
Salix purpurea
SapurV1A.1276s0060
I
0.699
SapurV1A.2191s0020
Salix purpurea
SapurV1A.2191s0020
N
0.762
SELMODRAFT_127220
Selaginella moellendorffii
SELMODRAFT_127220
I
0.683
SELMODRAFT_98669
Selaginella moellendorffii
SELMODRAFT_98669
I
0.683
Si038905m.g
Setaria italica
Si038905m.g
I
0.670
Solyc01g005660.1
Solanum lycopersicum
Solyc01g005660.1
I
0.676
Solyc07g008010.2
Solanum lycopersicum
Solyc07g008010.2
I
0.788
Solyc12g049300.1
Solanum lycopersicum
Solyc12g049300.1
I
0.679
PGSC0003DMG400030913
Solanum tuberosum
PGSC0003DMG400030913
I
0.788
Sb01g032770
Sorghum bicolor
Sb01g032770
I
0.670
TCM_004509
Theobroma cacao
TCM_004509
I
0.666
TCM_024180
Theobroma cacao
TCM_024180
I
0.675
TCM_025910
Theobroma cacao
TCM_025910
I
0.675
TCM_037376
Theobroma cacao
TCM_037376
I
0.666
TCM_037377
Theobroma cacao
TCM_037377
I
0.697
TCM_037379
Theobroma cacao
TCM_037379
I
0.678
TCM_037555
Theobroma cacao
TCM_037555
I
0.666
TCM_037559
Theobroma cacao
TCM_037559
I
0.663
TCM_038131
Theobroma cacao
TCM_038131
I
0.847
VIT_04s0008g01800
Vitis vinifera
VIT_04s0008g01800
I
0.666
VIT_06s0004g00570
Vitis vinifera
VIT_06s0004g00570
I
0.668
VIT_08s0007g07230
Vitis vinifera
VIT_08s0007g07230
I
0.685
VIT_09s0002g01410
Vitis vinifera
VIT_09s0002g01410
I
0.711
VIT_11s0016g01300
Vitis vinifera
VIT_11s0016g01300
I
0.663
VIT_11s0016g01310
Vitis vinifera
VIT_11s0016g01310
I
0.666
VIT_11s0016g01320
Vitis vinifera
VIT_11s0016g01320
I
0.677
VIT_11s0016g05660
Vitis vinifera
VIT_11s0016g05660
N
0.750
VIT_11s0016g05690
Vitis vinifera
VIT_11s0016g05690
N
0.688
VIT_13s0084g00530
Vitis vinifera
VIT_13s0084g00530
I
0.692