Cagra.0090s0025 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.0090s0025 T285935_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G38090
M07055_2.00 		Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN
NVNRDWNWRGATAARNWTVDD		 Dap-seq
OMalley et al.(2016)
At2g38090_col_a 		0.902 0.979
PK27693.1
M01285_2.00 		Cannabis sativa
NNYTATCBNN
NNVGATARNN		 PBM
Lambert et al.(2019)
pTH11302 		0.785 0.883
PK27213.1
M01284_2.00 		Cannabis sativa
NHWATCNNNN
NNNNGATWDN		 PBM
Lambert et al.(2019)
pTH10196 		0.736 0.819
PK27213.1
M02356_2.00 		Cannabis sativa
NHHATCNNNN
NNNNGATDDN		 PBM
Weirauch et al.(2014)
pTH9600 		0.736 0.819
AT5G58900
M07146_2.00 		Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD		 Dap-seq
OMalley et al.(2016)
At5g58900_col_a 		0.661 0.809
AT5G58900
M07147_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a 		0.661 0.809
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0090s0025.1.p Myb 140 187

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g029810 Brassica oleracea Bo4g029810 I 0.909
Carubv10023736m.g Capsella rubella Carubv10023736m.g I 0.909
AT2G38090 Arabidopsis thaliana AT2G38090 D 0.902
Bo4g187390 Brassica oleracea Bo4g187390 I 0.898
Bra005139 Brassica rapa Bra005139 I 0.898
Bra017138 Brassica rapa Bra017138 I 0.898
Bostr.23794s0264 Boechera stricta Bostr.23794s0264 I 0.898
Bo3g032160 Brassica oleracea Bo3g032160 I 0.885
Bra000038 Brassica rapa Bra000038 I 0.885
fgenesh2_kg.4__1876__AT2G38090.1 Arabidopsis lyrata fgenesh2_kg.4__1876__AT2G38090.1 I 0.879
Thhalv10017008m.g Eutrema salsugineum Thhalv10017008m.g I 0.879
Gorai.002G261600 Gossypium raimondii Gorai.002G261600 I 0.828
evm.TU.supercontig_1130.1 Carica papaya evm.TU.supercontig_1130.1 I 0.825
cassava43688.valid.m1 Manihot esculenta cassava43688.valid.m1 I 0.821
MTR_7g067080 Medicago truncatula MTR_7g067080 I 0.817
Gorai.012G112000 Gossypium raimondii Gorai.012G112000 I 0.817
POPTR_0016s11980 Populus trichocarpa POPTR_0016s11980 I 0.816
GLYMA07G17660 Glycine max GLYMA07G17660 I 0.812
GLYMA18G42530 Glycine max GLYMA18G42530 I 0.812
28288.m000014 Ricinus communis 28288.m000014 I 0.812
cassava30173.valid.m1 Manihot esculenta cassava30173.valid.m1 I 0.812
PRUPE_ppa009103mg Prunus persica PRUPE_ppa009103mg I 0.809
Pm002536 Prunus mume Pm002536 I 0.809
Ciclev10012285m.g Citrus clementina Ciclev10012285m.g I 0.809
orange1.1g021756m.g Citrus sinensis orange1.1g021756m.g I 0.809
TCM_021750 Theobroma cacao TCM_021750 I 0.807
Ca_19327 Cicer arietinum Ca_19327 I 0.806
SapurV1A.0778s0020 Salix purpurea SapurV1A.0778s0020 I 0.801
SapurV1A.3589s0010 Salix purpurea SapurV1A.3589s0010 I 0.801
MDP0000142580 Malus domestica MDP0000142580 I 0.800
POPTR_0006s09860 Populus trichocarpa POPTR_0006s09860 I 0.787
SapurV1A.0001s0790 Salix purpurea SapurV1A.0001s0790 I 0.786
PK27693.1 Cannabis sativa PK27693.1 D 0.785
MDP0000221993 Malus domestica MDP0000221993 I 0.783
cassava23356.valid.m1 Manihot esculenta cassava23356.valid.m1 I 0.781
Gorai.007G378300 Gossypium raimondii Gorai.007G378300 I 0.780
GLYMA01G27720 Glycine max GLYMA01G27720 I 0.779
GLYMA03G14440 Glycine max GLYMA03G14440 I 0.779
29681.m001296 Ricinus communis 29681.m001296 I 0.777
gene18815-v1.0-hybrid Fragaria vesca gene18815-v1.0-hybrid I 0.777
VIT_08s0007g01920 Vitis vinifera VIT_08s0007g01920 I 0.776
Gorai.009G093700 Gossypium raimondii Gorai.009G093700 I 0.773
PGSC0003DMG400019129 Solanum tuberosum PGSC0003DMG400019129 I 0.772
Cla004397 Citrullus lanatus Cla004397 I 0.767
evm.TU.supercontig_112.58 Carica papaya evm.TU.supercontig_112.58 I 0.766
GLYMA11G34930 Glycine max GLYMA11G34930 I 0.757
GLYMA18G03430 Glycine max GLYMA18G03430 I 0.757
GLYMA02G42140 Glycine max GLYMA02G42140 I 0.756
Solyc10g076820.1 Solanum lycopersicum Solyc10g076820.1 I 0.756
Eucgr.B02800 Eucalyptus grandis Eucgr.B02800 I 0.755
Lus10018209.g Linum usitatissimum Lus10018209.g I 0.749
Ca_12513 Cicer arietinum Ca_12513 I 0.745
Gorai.006G180900 Gossypium raimondii Gorai.006G180900 I 0.744
TCM_041672 Theobroma cacao TCM_041672 I 0.743
Cucsa.164580 Cucumis sativus Cucsa.164580 I 0.741
Ciclev10028910m.g Citrus clementina Ciclev10028910m.g I 0.741
orange1.1g021816m.g Citrus sinensis orange1.1g021816m.g I 0.741
Lus10040696.g Linum usitatissimum Lus10040696.g I 0.738
cassava23290.valid.m1 Manihot esculenta cassava23290.valid.m1 I 0.737
PK27213.1 Cannabis sativa PK27213.1 D 0.736
MTR_5g081860 Medicago truncatula MTR_5g081860 I 0.735
POPTR_0009s04730 Populus trichocarpa POPTR_0009s04730 I 0.732
GLYMA02G39000 Glycine max GLYMA02G39000 I 0.730
GLYMA14G37050 Glycine max GLYMA14G37050 I 0.730
Cla018243 Citrullus lanatus Cla018243 I 0.723
Cucsa.067080 Cucumis sativus Cucsa.067080 I 0.722
gene07984-v1.0-hybrid Fragaria vesca gene07984-v1.0-hybrid I 0.719
PGSC0003DMG400020344 Solanum tuberosum PGSC0003DMG400020344 I 0.718
Solyc09g014250.2 Solanum lycopersicum Solyc09g014250.2 I 0.718
POPTR_0001s25590 Populus trichocarpa POPTR_0001s25590 I 0.715
Cla018399 Citrullus lanatus Cla018399 I 0.715
MTR_5g069710 Medicago truncatula MTR_5g069710 I 0.714
MTR_3g462790 Medicago truncatula MTR_3g462790 I 0.712
GLYMA14G06750 Glycine max GLYMA14G06750 I 0.711
Ca_15603 Cicer arietinum Ca_15603 I 0.709
Lus10035518.g Linum usitatissimum Lus10035518.g I 0.708
GLYMA11G22960 Glycine max GLYMA11G22960 I 0.705
Cucsa.176140 Cucumis sativus Cucsa.176140 I 0.705
Ca_14247 Cicer arietinum Ca_14247 I 0.699
Aquca_009_00736 Aquilegia coerulea Aquca_009_00736 I 0.699
PGSC0003DMG400030348 Solanum tuberosum PGSC0003DMG400030348 I 0.697
Solyc06g076770.2 Solanum lycopersicum Solyc06g076770.2 I 0.697
Thhalv10014410m.g Eutrema salsugineum Thhalv10014410m.g I 0.696
SapurV1A.0709s0190 Salix purpurea SapurV1A.0709s0190 I 0.693
Cla013553 Citrullus lanatus Cla013553 I 0.690
Cucsa.139090 Cucumis sativus Cucsa.139090 I 0.690
Aquca_004_00289 Aquilegia coerulea Aquca_004_00289 I 0.690
Bostr.6251s0088 Boechera stricta Bostr.6251s0088 I 0.687
SapurV1A.0041s0720 Salix purpurea SapurV1A.0041s0720 I 0.686
SapurV1A.0164s0380 Salix purpurea SapurV1A.0164s0380 I 0.686
Lus10009884.g Linum usitatissimum Lus10009884.g I 0.685
Thhalv10014270m.g Eutrema salsugineum Thhalv10014270m.g I 0.685
Gorai.012G075600 Gossypium raimondii Gorai.012G075600 I 0.682
29610.m000410 Ricinus communis 29610.m000410 I 0.680
cassava1257.valid.m1 Manihot esculenta cassava1257.valid.m1 I 0.680
PRUPE_ppa018139mg Prunus persica PRUPE_ppa018139mg I 0.678
Pm018878 Prunus mume Pm018878 I 0.678
Pm000529 Prunus mume Pm000529 I 0.675
Bra002610 Brassica rapa Bra002610 I 0.674
VIT_06s0004g06100 Vitis vinifera VIT_06s0004g06100 I 0.674
mgf022442m Mimulus guttatus mgf022442m I 0.672
Cagra.0891s0087 Capsella grandiflora Cagra.0891s0087 I 0.672
Carubv10026903m.g Capsella rubella Carubv10026903m.g I 0.672
POPTR_0010s20040 Populus trichocarpa POPTR_0010s20040 I 0.668
cassava26873.m1 Manihot esculenta cassava26873.m1 I 0.668
SapurV1A.0262s0080 Salix purpurea SapurV1A.0262s0080 I 0.668
Lus10028264.g Linum usitatissimum Lus10028264.g I 0.667
PRUPE_ppa009072mg Prunus persica PRUPE_ppa009072mg I 0.666
Bo9g135730 Brassica oleracea Bo9g135730 I 0.664
Lus10014837.g Linum usitatissimum Lus10014837.g I 0.664
TCM_042604 Theobroma cacao TCM_042604 I 0.663
GSMUA_Achr8G02380_001 Musa acuminata GSMUA_Achr8G02380_001 I 0.662
AT5G58900 Arabidopsis thaliana AT5G58900 D 0.661
fgenesh2_kg.8__1829__AT5G58900.1 Arabidopsis lyrata fgenesh2_kg.8__1829__AT5G58900.1 I 0.661
Bostr.26833s0356 Boechera stricta Bostr.26833s0356 I 0.661