CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0342s0046
(
Capsella grandiflora
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cagra.0342s0046
T285948_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TRB2
M02314_2.00
Arabidopsis thaliana
WRMCCTAR
YTAGGKYW
PBM
Weirauch et al.(2014)
pTH7094
0.899
0.978
TRB2
M01083_2.00
Arabidopsis thaliana
HRMCCTAR
YTAGGKYD
PBM
Sullivan et al.(2014)
pTH7260
0.899
0.978
TRB2
M07157_2.00
Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD
Dap-seq
OMalley et al.(2016)
TBP3_col_a
0.899
0.978
TRB2
M07158_2.00
Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD
Dap-seq
OMalley et al.(2016)
TBP3_colamp_a
0.899
0.978
PK06103.1
M02348_2.00
Cannabis sativa
TGCCCTAG
CTAGGGCA
PBM
Weirauch et al.(2014)
pTH9649
0.746
0.891
TRB1
M01070_2.00
Arabidopsis thaliana
WRMCCTAR
YTAGGKYW
PBM
Sullivan et al.(2014)
pTH7117
0.741
0.826
OS01G0708000
M02326_2.00
Oryza sativa
WRMCCTAVNN
NNBTAGGKYW
PBM
Weirauch et al.(2014)
pTH8716
0.675
0.804
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0342s0046.1.p
Myb
5
56
KQKWTPEEEAALKAGVLKHGTGKWRTILSDPEFSFILKSRSNVDLKDKWRNI
Links
Other
Myb/SANT
family TFs
Other
Capsella grandiflora
TFs
204 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bostr.0568s0184
Boechera stricta
Bostr.0568s0184
I
0.909
Carubv10026874m.g
Capsella rubella
Carubv10026874m.g
I
0.909
Thhalv10004691m.g
Eutrema salsugineum
Thhalv10004691m.g
I
0.909
TRB2
Arabidopsis thaliana
AT5G67580
D
0.899
TRB2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8002157
I
0.899
TRB3
Arabidopsis lyrata
fgenesh2_kg.5__1337__AT3G49850.1
I
0.891
Bostr.6864s0256
Boechera stricta
Bostr.6864s0256
I
0.891
Cagra.4491s0006
Capsella grandiflora
Cagra.4491s0006
I
0.891
Carubv10017722m.g
Capsella rubella
Carubv10017722m.g
I
0.891
Thhalv10010562m.g
Eutrema salsugineum
Thhalv10010562m.g
I
0.891
Bo3g096520
Brassica oleracea
Bo3g096520
I
0.870
Bo9g019040
Brassica oleracea
Bo9g019040
I
0.870
Bra024438
Brassica rapa
Bra024438
I
0.870
Bra037837
Brassica rapa
Bra037837
I
0.870
Bra037839
Brassica rapa
Bra037839
I
0.870
cassava37744.valid.m1
Manihot esculenta
cassava37744.valid.m1
I
0.869
Bo1g081300
Brassica oleracea
Bo1g081300
I
0.857
Bra029978
Brassica rapa
Bra029978
I
0.857
TCM_000807
Theobroma cacao
TCM_000807
I
0.854
Ciclev10026089m.g
Citrus clementina
Ciclev10026089m.g
I
0.854
Gorai.003G030800
Gossypium raimondii
Gorai.003G030800
I
0.854
Gorai.007G224200
Gossypium raimondii
Gorai.007G224200
I
0.854
orange1.1g020653m.g
Citrus sinensis
orange1.1g020653m.g
I
0.854
TRB3
Arabidopsis thaliana
AT3G49850
I
0.851
POPTR_0007s14920
Populus trichocarpa
POPTR_0007s14920
I
0.835
29661.m000926
Ricinus communis
29661.m000926
I
0.835
cassava7508.valid.m1
Manihot esculenta
cassava7508.valid.m1
I
0.835
OB01G30760
Oryza brachyantha
OB01G30760
I
0.831
PGSC0003DMG401025742
Solanum tuberosum
PGSC0003DMG401025742
I
0.805
BGIOSGA003871
Oryza indica
BGIOSGA003871
I
0.797
LPERR01G18090
Leersia perrieri
LPERR01G18090
I
0.797
OBART01G21150
Oryza barthii
OBART01G21150
I
0.797
OLONG_011068
Oryza longistaminata
OLONG_011068
I
0.797
OMERI01G19490
Oryza meridionalis
OMERI01G19490
I
0.797
OMERI01G19510
Oryza meridionalis
OMERI01G19510
I
0.797
ONIVA01G23780
Oryza nivara
ONIVA01G23780
I
0.797
OPUNC01G21220
Oryza punctata
OPUNC01G21220
I
0.797
ORGLA01G0168300
Oryza glaberrima
ORGLA01G0168300
I
0.797
ORUFI01G23880
Oryza rufipogon
ORUFI01G23880
I
0.797
OS01G0589300
Oryza sativa
OS01G0589300
I
0.797
POPTR_0014s01010
Populus trichocarpa
POPTR_0014s01010
I
0.796
SapurV1A.0235s0100
Salix purpurea
SapurV1A.0235s0100
I
0.796
SapurV1A.1368s0050
Salix purpurea
SapurV1A.1368s0050
I
0.796
TCM_007242
Theobroma cacao
TCM_007242
I
0.793
TRB1
Vitis vinifera
VIT_03s0091g01030
I
0.793
Gorai.005G230800
Gossypium raimondii
Gorai.005G230800
I
0.793
GSMUA_Achr2G13040_001
Musa acuminata
GSMUA_Achr2G13040_001
I
0.784
gene05764-v1.0-hybrid
Fragaria vesca
gene05764-v1.0-hybrid
I
0.778
Lus10011546.g
Linum usitatissimum
Lus10011546.g
I
0.778
Lus10019260.g
Linum usitatissimum
Lus10019260.g
I
0.778
29912.m005376
Ricinus communis
29912.m005376
I
0.771
Ciclev10009173m.g
Citrus clementina
Ciclev10009173m.g
I
0.771
gene12682-v1.0-hybrid
Fragaria vesca
gene12682-v1.0-hybrid
I
0.771
orange1.1g024128m.g
Citrus sinensis
orange1.1g024128m.g
I
0.771
PRUPE_ppa011492mg
Prunus persica
PRUPE_ppa011492mg
I
0.770
Pm021139
Prunus mume
Pm021139
I
0.770
POPTR_0001s30000
Populus trichocarpa
POPTR_0001s30000
I
0.766
SapurV1A.0005s0260
Salix purpurea
SapurV1A.0005s0260
I
0.766
PDK_20s1467521g002
Phoenix dactylifera
PDK_20s1467521g002
I
0.766
VIT_11s0016g01890
Vitis vinifera
VIT_11s0016g01890
I
0.760
Aquca_001_00028
Aquilegia coerulea
Aquca_001_00028
I
0.760
PK00568.1
Cannabis sativa
PK00568.1
I
0.760
POPTR_0009s09020
Populus trichocarpa
POPTR_0009s09020
I
0.759
Cla006547
Citrullus lanatus
Cla006547
I
0.759
29812.m000204
Ricinus communis
29812.m000204
I
0.759
cassava19326.valid.m1
Manihot esculenta
cassava19326.valid.m1
I
0.759
Cucsa.298390
Cucumis sativus
Cucsa.298390
I
0.759
Aquca_004_00181
Aquilegia coerulea
Aquca_004_00181
I
0.759
Ciclev10028926m.g
Citrus clementina
Ciclev10028926m.g
I
0.759
Eucgr.I01053
Eucalyptus grandis
Eucgr.I01053
I
0.759
Lus10014653.g
Linum usitatissimum
Lus10014653.g
I
0.759
Lus10033775.g
Linum usitatissimum
Lus10033775.g
I
0.759
orange1.1g022048m.g
Citrus sinensis
orange1.1g022048m.g
I
0.759
SapurV1A.0019s0460
Salix purpurea
SapurV1A.0019s0460
I
0.759
PK19870.1
Cannabis sativa
PK19870.1
I
0.759
mgf009594m
Mimulus guttatus
mgf009594m
I
0.754
PDK_20s1413011g001
Phoenix dactylifera
PDK_20s1413011g001
I
0.753
SELMODRAFT_443975
Selaginella moellendorffii
SELMODRAFT_443975
I
0.752
SELMODRAFT_49312
Selaginella moellendorffii
SELMODRAFT_49312
I
0.752
POPTR_0006s14940
Populus trichocarpa
POPTR_0006s14940
I
0.751
PRUPE_ppa007796mg
Prunus persica
PRUPE_ppa007796mg
I
0.751
Pm027209
Prunus mume
Pm027209
I
0.751
Eucgr.C00865
Eucalyptus grandis
Eucgr.C00865
I
0.751
MDP0000265359
Malus domestica
MDP0000265359
I
0.751
SapurV1A.0087s0150
Salix purpurea
SapurV1A.0087s0150
I
0.751
SapurV1A.0108s0150
Salix purpurea
SapurV1A.0108s0150
I
0.751
GSMUA_Achr7G01090_001
Musa acuminata
GSMUA_Achr7G01090_001
I
0.749
MTR_8g494240
Medicago truncatula
MTR_8g494240
I
0.749
Lus10027621.g
Linum usitatissimum
Lus10027621.g
I
0.749
GLYMA01G40220
Glycine max
GLYMA01G40220
I
0.746
GLYMA05G22500
Glycine max
GLYMA05G22500
I
0.746
GLYMA11G05070
Glycine max
GLYMA11G05070
I
0.746
GLYMA17G17370
Glycine max
GLYMA17G17370
I
0.746
MTR_4g097130
Medicago truncatula
MTR_4g097130
I
0.746
PRUPE_ppa009220mg
Prunus persica
PRUPE_ppa009220mg
I
0.746
Ca_02232
Cicer arietinum
Ca_02232
I
0.746
Ca_09355
Cicer arietinum
Ca_09355
I
0.746
Cla014248
Citrullus lanatus
Cla014248
I
0.746
Pm002374
Prunus mume
Pm002374
I
0.746
cassava43824.valid.m1
Manihot esculenta
cassava43824.valid.m1
I
0.746
Cucsa.103240
Cucumis sativus
Cucsa.103240
I
0.746
MDP0000239354
Malus domestica
MDP0000239354
I
0.746
PK06103.1
Cannabis sativa
PK06103.1
D
0.746
LjT25P15.150.nd
Lotus japonicus
LjT25P15.150.nd
I
0.746
Lus10012092.g
Linum usitatissimum
Lus10012092.g
I
0.743
Lus10025203.g
Linum usitatissimum
Lus10025203.g
I
0.743
mgf011386m
Mimulus guttatus
mgf011386m
I
0.742
TRB1
Arabidopsis thaliana
AT1G49950
D
0.741
Bo6g018740
Brassica oleracea
Bo6g018740
I
0.741
Bra018818
Brassica rapa
Bra018818
I
0.741
TRB1
Arabidopsis lyrata
fgenesh2_kg.1__4077__AT1G49950.2
I
0.741
Bostr.26675s0174
Boechera stricta
Bostr.26675s0174
I
0.741
Cagra.2826s0004
Capsella grandiflora
Cagra.2826s0004
I
0.741
Carubv10009836m.g
Capsella rubella
Carubv10009836m.g
I
0.741
Thhalv10011686m.g
Eutrema salsugineum
Thhalv10011686m.g
I
0.741
MTR_1g041765
Medicago truncatula
MTR_1g041765
I
0.739
VIT_00s1311g00020
Vitis vinifera
VIT_00s1311g00020
I
0.739
VIT_07s0151g00480
Vitis vinifera
VIT_07s0151g00480
I
0.739
Ca_08043
Cicer arietinum
Ca_08043
I
0.739
gene25445-v1.0-hybrid
Fragaria vesca
gene25445-v1.0-hybrid
I
0.739
PGSC0003DMG402003328
Solanum tuberosum
PGSC0003DMG402003328
I
0.737
Solyc02g064630.2
Solanum lycopersicum
Solyc02g064630.2
I
0.737
Eucgr.H02312
Eucalyptus grandis
Eucgr.H02312
I
0.736
Solyc01g106940.2
Solanum lycopersicum
Solyc01g106940.2
I
0.734
MTR_0095s0040
Medicago truncatula
MTR_0095s0040
I
0.729
POPTR_0018s07040
Populus trichocarpa
POPTR_0018s07040
I
0.729
SELMODRAFT_413266
Selaginella moellendorffii
SELMODRAFT_413266
I
0.729
SELMODRAFT_426759
Selaginella moellendorffii
SELMODRAFT_426759
I
0.729
MDP0000234807
Malus domestica
MDP0000234807
I
0.728
AMTR_s00036p00166880
Amborella trichopoda
AMTR_s00036p00166880
I
0.725
Lus10030935.g
Linum usitatissimum
Lus10030935.g
I
0.725
Lus10040111.g
Linum usitatissimum
Lus10040111.g
I
0.725
GLYMA09G03390
Glycine max
GLYMA09G03390
I
0.721
GLYMA15G14320
Glycine max
GLYMA15G14320
I
0.721
GSMUA_Achr6G31260_001
Musa acuminata
GSMUA_Achr6G31260_001
I
0.721
MTR_2g031870
Medicago truncatula
MTR_2g031870
I
0.721
PDK_20s1888511g002
Phoenix dactylifera
PDK_20s1888511g002
I
0.718
BRADI4G01770
Brachypodium distachyon
BRADI4G01770
I
0.717
MLOC_10278
Hordeum vulgare
MLOC_10278
I
0.717
PGSC0003DMG400023131
Solanum tuberosum
PGSC0003DMG400023131
I
0.717
Solyc11g044320.1
Solanum lycopersicum
Solyc11g044320.1
I
0.717
Traes_5AS_8756ECB5A
Triticum aestivum
Traes_5AS_8756ECB5A
I
0.717
Traes_5BS_EB206B8BC
Triticum aestivum
Traes_5BS_EB206B8BC
I
0.717
Traes_5DS_3EE830A43
Triticum aestivum
Traes_5DS_3EE830A43
I
0.717
TRIUR3_10613
Triticum urartu
TRIUR3_10613
I
0.717
GSMUA_Achr6G30000_001
Musa acuminata
GSMUA_Achr6G30000_001
I
0.715
mgf000125m
Mimulus guttatus
mgf000125m
I
0.715
mgf010975m
Mimulus guttatus
mgf010975m
I
0.715
AMTR_s00007p00193000
Amborella trichopoda
AMTR_s00007p00193000
I
0.714
Bo7g099090
Brassica oleracea
Bo7g099090
I
0.709
Bra012919
Brassica rapa
Bra012919
I
0.709
MTR_5g015340
Medicago truncatula
MTR_5g015340
I
0.706
OSTLU_27049
Ostreococcus lucimarinus
OSTLU_27049
I
0.705
gw1.1.287.1
Physcomitrella patens
gw1.1.287.1
I
0.705
gw1.176.27.1
Physcomitrella patens
gw1.176.27.1
I
0.705
evm.TU.supercontig_25.81
Carica papaya
evm.TU.supercontig_25.81
I
0.705
Si002403m.g
Setaria italica
Si002403m.g
I
0.703
Pavir.Ea02064
Panicum virgatum
Pavir.Ea02064
I
0.703
Pavir.J27218
Panicum virgatum
Pavir.J27218
I
0.703
EuGene.0500010080
Micromonas sp RCC299
EuGene.0500010080
I
0.699
gene07496-v1.0-hybrid
Fragaria vesca
gene07496-v1.0-hybrid
I
0.699
Bo5g077530
Brassica oleracea
Bo5g077530
I
0.695
Bra039650
Brassica rapa
Bra039650
I
0.695
GRMZM2G087817
Zea mays
GRMZM2G087817
I
0.693
GRMZM2G136887
Zea mays
GRMZM2G136887
I
0.693
Sb03g026470
Sorghum bicolor
Sb03g026470
I
0.693
GSMUA_Achr4G08670_001
Musa acuminata
GSMUA_Achr4G08670_001
I
0.684
GSMUA_Achr4G09130_001
Musa acuminata
GSMUA_Achr4G09130_001
I
0.684
GSMUA_Achr8G24960_001
Musa acuminata
GSMUA_Achr8G24960_001
I
0.684
Aquca_060_00026
Aquilegia coerulea
Aquca_060_00026
I
0.677
mgf004823m
Mimulus guttatus
mgf004823m
I
0.676
BGIOSGA004300
Oryza indica
BGIOSGA004300
I
0.675
BRADI2G47820
Brachypodium distachyon
BRADI2G47820
I
0.675
GRMZM2G108424
Zea mays
GRMZM2G108424
I
0.675
LPERR01G24270
Leersia perrieri
LPERR01G24270
I
0.675
OB01G37330
Oryza brachyantha
OB01G37330
I
0.675
OBART01G28260
Oryza barthii
OBART01G28260
I
0.675
OGLUM01G32190
Oryza glumaepatula
OGLUM01G32190
I
0.675
OLONG_008666
Oryza longistaminata
OLONG_008666
I
0.675
OMERI05G07460
Oryza meridionalis
OMERI05G07460
I
0.675
ONIVA01G32190
Oryza nivara
ONIVA01G32190
I
0.675
OPUNC01G28080
Oryza punctata
OPUNC01G28080
I
0.675
ORGLA01G0233700
Oryza glaberrima
ORGLA01G0233700
I
0.675
ORUFI01G31370
Oryza rufipogon
ORUFI01G31370
I
0.675
OS01G0708000
Oryza sativa
OS01G0708000
D
0.675
Sb03g032530
Sorghum bicolor
Sb03g032530
I
0.675
Si002467m.g
Setaria italica
Si002467m.g
I
0.675
Traes_3AL_12B53AB09
Triticum aestivum
Traes_3AL_12B53AB09
I
0.675
TRAES3BF075800120CFD_g
Triticum aestivum
TRAES3BF075800120CFD_g
I
0.675
Pavir.Ea02570
Panicum virgatum
Pavir.Ea02570
I
0.675
Pavir.Eb02802
Panicum virgatum
Pavir.Eb02802
I
0.675
AT1G17520
Arabidopsis thaliana
AT1G17520
I
0.672
scaffold_101953.1
Arabidopsis lyrata
scaffold_101953.1
I
0.672
chr2.LjT13P17.300.nd
Lotus japonicus
chr2.LjT13P17.300.nd
I
0.672
chr3.LjT02L14.30.nd
Lotus japonicus
chr3.LjT02L14.30.nd
I
0.672
LjSGA_016825.2
Lotus japonicus
LjSGA_016825.2
I
0.672
LjSGA_029815.1
Lotus japonicus
LjSGA_029815.1
I
0.672
BRADI2G42240
Brachypodium distachyon
BRADI2G42240
I
0.668
MTR_8g092810
Medicago truncatula
MTR_8g092810
I
0.665
SELMODRAFT_49296
Selaginella moellendorffii
SELMODRAFT_49296
I
0.665
SELMODRAFT_49297
Selaginella moellendorffii
SELMODRAFT_49297
I
0.665
Bra036035
Brassica rapa
Bra036035
I
0.664
Solyc07g040920.2
Solanum lycopersicum
Solyc07g040920.2
I
0.662
EuGene.0000030935
Micromonas pusilla
EuGene.0000030935
I
0.662