Cagra.0448s0008 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.0448s0008 T285957_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.849 0.979
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.849 0.979
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.841 0.957
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.841 0.936
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.823 0.915
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0448s0008.1.p Myb 473 523

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000010576 Ailuropoda melanoleuca ENSAMEG00000010576 I
ZNF205 Bos taurus ENSBTAG00000005572 I
ENSBTAP00000007323-D1 Bos grunniens ENSBTAP00000007323-D1 I
ZNF205 Canis familiaris ENSCAFG00000023869 I
ZNF205 Callithrix jacchus ENSCJAG00000015546 I
ZNF205 Dasypus novemcinctus ENSDNOG00000037994 I
ZNF205 Equus caballus ENSECAG00000009869 I
ZNF205 Erinaceus europaeus ENSEEUG00000010049 I
ENSETEG00000002476 Echinops telfairi ENSETEG00000002476 I
ZNF205 Felis catus ENSFCAG00000026028 I
ZNF205 Homo sapiens ENSG00000122386 D
ZNF205 Gorilla gorilla ENSGGOG00000012036 I
ZNF205 Loxodonta africana ENSLAFG00000021564 I
ENSMEUG00000004328 Macropus eugenii ENSMEUG00000004328 I
ZNF205 Microcebus murinus ENSMICG00000009089 I
ZNF205 Macaca mulatta ENSMMUG00000009487 I
ENSMPUG00000015184 Mustela putorius furo ENSMPUG00000015184 I
Zfp13 Mus musculus ENSMUSG00000062012 I
ENSNLEG00000009600 Nomascus leucogenys ENSNLEG00000009600 I
ENSOARG00000001319 Ovis aries ENSOARG00000001319 I
ZNF205 Otolemur garnettii ENSOGAG00000003693 I
ZNF205 Ochotona princeps ENSOPRG00000005820 I
ENSP00000219091 Macaca fascicularis ENSP00000219091 I
ENSPANG00000024398 Papio anubis ENSPANG00000024398 I
ENSPPYG00000007034 Pongo abelii ENSPPYG00000007034 I
ZNF205 Pan troglodytes ENSPTRG00000007686 I
ZNF205 Pteropus vampyrus ENSPVAG00000001475 I
Zfp13 Rattus norvegicus ENSRNOG00000003455 I
ZNF205 Sorex araneus ENSSARG00000006551 I
ZNF205 Sus scrofa ENSSSCG00000029375 I
ENSSTOG00000003803 Ictidomys tridecemlineatus ENSSTOG00000003803 I
Myotis_brandtii_ZNF205_10028065 Myotis brandtii Myotis_brandtii_ZNF205_10028065 I