Cagra.0448s0008 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.0448s0008 T285957_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.849 0.979
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.849 0.979
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.841 0.957
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.841 0.936
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.823 0.915
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0448s0008.1.p Myb 473 523

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_018_00039 Aquilegia coerulea Aquca_018_00039 I
SCRM2 Arabidopsis lyrata Al_scaffold_0001_1326 I
BRADI3G01901 Brachypodium distachyon BRADI3G01901 I
BRADI3G01910 Brachypodium distachyon BRADI3G01910 I
Cagra.0568s0207 Capsella grandiflora Cagra.0568s0207 I
Carubv10009081m.g Capsella rubella Carubv10009081m.g I
Cla023112 Citrullus lanatus Cla023112 I
Cla019147 Citrullus lanatus Cla019147 N
Ciclev10009285m.g Citrus clementina Ciclev10009285m.g I
orange1.1g025665m.g Citrus sinensis orange1.1g025665m.g I
Cucsa.282100 Cucumis sativus Cucsa.282100 N
Cucsa.088960 Cucumis sativus Cucsa.088960 I
Eucgr.C02208 Eucalyptus grandis Eucgr.C02208 I
gene17273-v1.0-hybrid Fragaria vesca gene17273-v1.0-hybrid I
gene23715-v1.0-hybrid Fragaria vesca gene23715-v1.0-hybrid I
GLYMA05G38530 Glycine max GLYMA05G38530 I
GLYMA09G06770 Glycine max GLYMA09G06770 I
GLYMA13G00480 Glycine max GLYMA13G00480 I
GLYMA15G18070 Glycine max GLYMA15G18070 I
GLYMA16G26291 Glycine max GLYMA16G26291 I
GLYMA17G06610 Glycine max GLYMA17G06610 I
Gorai.009G002200 Gossypium raimondii Gorai.009G002200 I
Gorai.013G242800 Gossypium raimondii Gorai.013G242800 I
MLOC_52192 Hordeum vulgare MLOC_52192 I
Lus10006951.g Linum usitatissimum Lus10006951.g I
MDP0000318229 Malus domestica MDP0000318229 I
MDP0000133262 Malus domestica MDP0000133262 I
cassava2997.m1 Manihot esculenta cassava2997.m1 I
MTR_2g038040 Medicago truncatula MTR_2g038040 I
mgf024029m Mimulus guttatus mgf024029m I
mgf019723m Mimulus guttatus mgf019723m I
GSMUA_Achr10G23370_001 Musa acuminata GSMUA_Achr10G23370_001 I
GSMUA_Achr7G16000_001 Musa acuminata GSMUA_Achr7G16000_001 I
OBART02G01550 Oryza barthii OBART02G01550 I
ORGLA02G0014200 Oryza glaberrima ORGLA02G0014200 I
OGLUM02G01420 Oryza glumaepatula OGLUM02G01420 I
BGIOSGA007229 Oryza indica BGIOSGA007229 I
OMERI02G00890 Oryza meridionalis OMERI02G00890 I
ONIVA02G01430 Oryza nivara ONIVA02G01430 I
OPUNC02G01010 Oryza punctata OPUNC02G01010 I
ORUFI02G01530 Oryza rufipogon ORUFI02G01530 I
TDR Oryza sativa OS02G0120500 I
Pavir.Ab00204 Panicum virgatum Pavir.Ab00204 I
POPTR_0018s13860 Populus trichocarpa POPTR_0018s13860 I
Pm020879 Prunus mume Pm020879 I
PRUPE_ppa022211mg Prunus persica PRUPE_ppa022211mg I
PRUPE_ppa002978mg Prunus persica PRUPE_ppa002978mg I
30198.m000869 Ricinus communis 30198.m000869 I
SapurV1A.0140s0210 Salix purpurea SapurV1A.0140s0210 I
Si019518m.g Setaria italica Si019518m.g I
Si006500m.g Setaria italica Si006500m.g I
Solyc07g018010.2 Solanum lycopersicum Solyc07g018010.2 I
PGSC0003DMG400004087 Solanum tuberosum PGSC0003DMG400004087 I
Sb04g001650 Sorghum bicolor Sb04g001650 I
TCM_039471 Theobroma cacao TCM_039471 I
Traes_6AS_4C2F64614 Triticum aestivum Traes_6AS_4C2F64614 I
VIT_11s0052g00100 Vitis vinifera VIT_11s0052g00100 I
GRMZM2G139372 Zea mays GRMZM2G139372 N
GRMZM2G042893 Zea mays GRMZM2G042893 N