CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0612s0043
(
Capsella grandiflora
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cagra.0612s0043
T285975_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB27
M07097_2.00
Arabidopsis thaliana
HHTACCTAAYTTWWN
NWWAARTTAGGTADD
Dap-seq
OMalley et al.(2016)
MYB27_col_a
0.853
0.925
MYB27
M07098_2.00
Arabidopsis thaliana
NYHTACCTAAYTTWHN
NDWAARTTAGGTADRN
Dap-seq
OMalley et al.(2016)
MYB27_colamp_a
0.853
0.925
ATMYB121
M07091_2.00
Arabidopsis thaliana
NYNWACCTAMYHHH
DDDRKTAGGTWNRN
Dap-seq
OMalley et al.(2016)
MYB121_col_a
0.673
0.656
MYB59
M00883_2.00
Arabidopsis thaliana
NKACCTAAYN
NRTTAGGTMN
PBM
Franco-Zorrilla et al.(2014)
MYB59
0.669
0.699
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0612s0043.1.p
Myb
11
58
RGPWLEEEDERLVKFVTLLGERRWDSLAIVSGLKRSGKSCRLRWMNYL
Cagra.0612s0043.1.p
Myb
64
109
HGPMSQEEVRIILQLHALWGNKWSKIARRLPGRTDNEIKNYWRTHF
Links
Other
Myb/SANT
family TFs
Other
Capsella grandiflora
TFs
222 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bostr.9544s0002
Boechera stricta
Bostr.9544s0002
I
0.909
Carubv10019409m.g
Capsella rubella
Carubv10019409m.g
I
0.909
Thhalv10010915m.g
Eutrema salsugineum
Thhalv10010915m.g
I
0.882
AtMYB27
Arabidopsis lyrata
fgenesh2_kg.5__1687__AT3G53200.1
I
0.872
MYB27
Arabidopsis thaliana
AT3G53200
D
0.853
Bo6g067190
Brassica oleracea
Bo6g067190
I
0.849
Bra028550
Brassica rapa
Bra028550
I
0.841
Bo8g082570
Brassica oleracea
Bo8g082570
I
0.825
Bra006977
Brassica rapa
Bra006977
I
0.808
evm.TU.supercontig_92.99
Carica papaya
evm.TU.supercontig_92.99
I
0.790
AtMYB27
Vitis vinifera
VIT_08s0007g04830
I
0.754
TCM_022293
Theobroma cacao
TCM_022293
I
0.753
Aquca_030_00038
Aquilegia coerulea
Aquca_030_00038
I
0.736
PK10274.1
Cannabis sativa
PK10274.1
I
0.734
orange1.1g044161m.g
Citrus sinensis
orange1.1g044161m.g
I
0.731
AMTR_s01267p00006490
Amborella trichopoda
AMTR_s01267p00006490
I
0.726
GSMUA_Achr2G19380_001
Musa acuminata
GSMUA_Achr2G19380_001
I
0.726
Gorai.009G413600
Gossypium raimondii
Gorai.009G413600
I
0.725
GSMUA_Achr7G18200_001
Musa acuminata
GSMUA_Achr7G18200_001
I
0.723
gene09683-v1.0-hybrid
Fragaria vesca
gene09683-v1.0-hybrid
I
0.718
GSMUA_Achr11G24690_001
Musa acuminata
GSMUA_Achr11G24690_001
I
0.716
cassava9891.m1
Manihot esculenta
cassava9891.m1
I
0.715
GSMUA_Achr10G13520_001
Musa acuminata
GSMUA_Achr10G13520_001
I
0.714
GSMUA_Achr6G15370_001
Musa acuminata
GSMUA_Achr6G15370_001
I
0.712
TCM_018971
Theobroma cacao
TCM_018971
I
0.710
Ciclev10013466m.g
Citrus clementina
Ciclev10013466m.g
I
0.710
orange1.1g047854m.g
Citrus sinensis
orange1.1g047854m.g
I
0.710
GSMUA_Achr5G28350_001
Musa acuminata
GSMUA_Achr5G28350_001
I
0.709
POPTR_0004s11720
Populus trichocarpa
POPTR_0004s11720
I
0.709
PRUPE_ppa016385mg
Prunus persica
PRUPE_ppa016385mg
I
0.708
Pm015392
Prunus mume
Pm015392
I
0.708
Eucgr.A01648
Eucalyptus grandis
Eucgr.A01648
I
0.708
BRADI2G62510
Brachypodium distachyon
BRADI2G62510
I
0.707
GSMUA_Achr8G34340_001
Musa acuminata
GSMUA_Achr8G34340_001
I
0.707
BGIOSGA035986
Oryza indica
BGIOSGA035986
I
0.706
BRADI4G04050
Brachypodium distachyon
BRADI4G04050
I
0.706
GRMZM2G047626
Zea mays
GRMZM2G047626
I
0.706
GRMZM2G130149
Zea mays
GRMZM2G130149
I
0.706
GSMUA_Achr8G02640_001
Musa acuminata
GSMUA_Achr8G02640_001
I
0.706
LPERR12G13390
Leersia perrieri
LPERR12G13390
I
0.706
OB12G23080
Oryza brachyantha
OB12G23080
I
0.706
ORGLA12G0141600
Oryza glaberrima
ORGLA12G0141600
I
0.706
ORGLA12G0206100
Oryza glaberrima
ORGLA12G0206100
I
0.706
ORUFI12G17930
Oryza rufipogon
ORUFI12G17930
I
0.706
MYBAS2
Oryza sativa
OS12G0567300
I
0.706
Sb08g018580
Sorghum bicolor
Sb08g018580
I
0.706
Si023104m.g
Setaria italica
Si023104m.g
I
0.706
Pavir.Ca02588
Panicum virgatum
Pavir.Ca02588
I
0.706
Pavir.J11500
Panicum virgatum
Pavir.J11500
I
0.706
Eucgr.I02057
Eucalyptus grandis
Eucgr.I02057
I
0.705
OB11G27690
Oryza brachyantha
OB11G27690
I
0.704
PGSC0003DMG400001376
Solanum tuberosum
PGSC0003DMG400001376
I
0.704
Solyc02g089190.1
Solanum lycopersicum
Solyc02g089190.1
I
0.704
BGIOSGA005283
Oryza indica
BGIOSGA005283
I
0.703
LPERR01G40120
Leersia perrieri
LPERR01G40120
I
0.703
OB01G54920
Oryza brachyantha
OB01G54920
I
0.703
OBART01G45730
Oryza barthii
OBART01G45730
I
0.703
OPUNC01G44650
Oryza punctata
OPUNC01G44650
I
0.703
ORGLA01G0394700
Oryza glaberrima
ORGLA01G0394700
I
0.703
ORUFI01G49220
Oryza rufipogon
ORUFI01G49220
I
0.703
GSMUA_Achr10G14030_001
Musa acuminata
GSMUA_Achr10G14030_001
I
0.702
GSMUA_Achr6G14840_001
Musa acuminata
GSMUA_Achr6G14840_001
I
0.702
F775_29427
Aegilops tauschii
F775_29427
I
0.699
Traes_3AL_A8AF980F3
Triticum aestivum
Traes_3AL_A8AF980F3
I
0.699
TRAES3BF065400010CFD_g
Triticum aestivum
TRAES3BF065400010CFD_g
I
0.699
TRIUR3_22432
Triticum urartu
TRIUR3_22432
I
0.699
F775_06315
Aegilops tauschii
F775_06315
I
0.697
MLOC_52439
Hordeum vulgare
MLOC_52439
I
0.697
TRIUR3_16862
Triticum urartu
TRIUR3_16862
I
0.697
POPTR_0017s13370
Populus trichocarpa
POPTR_0017s13370
I
0.695
Thhalv10005370m.g
Eutrema salsugineum
Thhalv10005370m.g
I
0.694
GSMUA_Achr10G03710_001
Musa acuminata
GSMUA_Achr10G03710_001
I
0.693
MDP0000286143
Malus domestica
MDP0000286143
I
0.692
GSMUA_Achr5G06530_001
Musa acuminata
GSMUA_Achr5G06530_001
I
0.691
POPTR_0010s07450
Populus trichocarpa
POPTR_0010s07450
I
0.689
Solyc05g053150.1
Solanum lycopersicum
Solyc05g053150.1
I
0.689
MTR_1g062940
Medicago truncatula
MTR_1g062940
N
0.687
GRMZM2G048136
Zea mays
GRMZM2G048136
I
0.686
MTR_1g073170
Medicago truncatula
MTR_1g073170
I
0.686
PGSC0003DMG400027202
Solanum tuberosum
PGSC0003DMG400027202
I
0.685
Si010822m.g
Setaria italica
Si010822m.g
I
0.685
ATMYB121
Vitis vinifera
VIT_14s0083g01060
I
0.685
Aquca_025_00059
Aquilegia coerulea
Aquca_025_00059
I
0.684
GLYMA10G26681
Glycine max
GLYMA10G26681
I
0.683
GLYMA17G17560
Glycine max
GLYMA17G17560
I
0.683
GLYMA20G20980
Glycine max
GLYMA20G20980
I
0.683
PGSC0003DMG400001504
Solanum tuberosum
PGSC0003DMG400001504
I
0.683
Solyc09g090790.2
Solanum lycopersicum
Solyc09g090790.2
I
0.683
Cla016762
Citrullus lanatus
Cla016762
I
0.683
Cucsa.238540
Cucumis sativus
Cucsa.238540
I
0.683
MYB305
Arabidopsis thaliana
AT3G24310
I
0.680
Bo1g098860
Brassica oleracea
Bo1g098860
I
0.680
Bo3g083130
Brassica oleracea
Bo3g083130
I
0.680
Bo7g033260
Brassica oleracea
Bo7g033260
I
0.680
Bra001941
Brassica rapa
Bra001941
I
0.680
Bra015029
Brassica rapa
Bra015029
I
0.680
Bra028369
Brassica rapa
Bra028369
I
0.680
fgenesh2_kg.3__2645__AT3G24310.1
Arabidopsis lyrata
fgenesh2_kg.3__2645__AT3G24310.1
I
0.680
GSMUA_Achr1G03450_001
Musa acuminata
GSMUA_Achr1G03450_001
I
0.680
MTR_1g045610
Medicago truncatula
MTR_1g045610
I
0.680
PRUPE_ppa024234mg
Prunus persica
PRUPE_ppa024234mg
I
0.680
Pm009050
Prunus mume
Pm009050
I
0.680
cassava24463.valid.m1
Manihot esculenta
cassava24463.valid.m1
I
0.680
mgf004640m
Mimulus guttatus
mgf004640m
I
0.680
Bostr.19424s0195
Boechera stricta
Bostr.19424s0195
I
0.680
Cagra.0454s0003
Capsella grandiflora
Cagra.0454s0003
I
0.680
Carubv10014367m.g
Capsella rubella
Carubv10014367m.g
I
0.680
evm.TU.supercontig_59.23
Carica papaya
evm.TU.supercontig_59.23
I
0.680
gene28293-v1.0-hybrid
Fragaria vesca
gene28293-v1.0-hybrid
I
0.680
Gorai.006G073500
Gossypium raimondii
Gorai.006G073500
I
0.680
Gorai.006G254200
Gossypium raimondii
Gorai.006G254200
I
0.680
Thhalv10002634m.g
Eutrema salsugineum
Thhalv10002634m.g
I
0.680
BRADI2G37377
Brachypodium distachyon
BRADI2G37377
I
0.679
SapurV1A.0323s0160
Salix purpurea
SapurV1A.0323s0160
I
0.679
AMTR_s00145p00098450
Amborella trichopoda
AMTR_s00145p00098450
I
0.678
ATMYB121
Arabidopsis lyrata
fgenesh2_kg.5__710__AT3G30210.1
I
0.678
PGSC0003DMG400028282
Solanum tuberosum
PGSC0003DMG400028282
N
0.678
Solyc10g083900.1
Solanum lycopersicum
Solyc10g083900.1
N
0.678
Cagra.0690s0007
Capsella grandiflora
Cagra.0690s0007
I
0.678
Carubv10014443m.g
Capsella rubella
Carubv10014443m.g
I
0.678
SapurV1A.0589s0170
Salix purpurea
SapurV1A.0589s0170
I
0.678
BGIOSGA019054
Oryza indica
BGIOSGA019054
I
0.677
LPERR05G01030
Leersia perrieri
LPERR05G01030
I
0.677
OB05G11070
Oryza brachyantha
OB05G11070
I
0.677
OBART05G01080
Oryza barthii
OBART05G01080
I
0.677
OGLUM05G01090
Oryza glumaepatula
OGLUM05G01090
I
0.677
OLONG_004480
Oryza longistaminata
OLONG_004480
I
0.677
OMERI05G01150
Oryza meridionalis
OMERI05G01150
I
0.677
ONIVA05G01120
Oryza nivara
ONIVA05G01120
I
0.677
OPUNC05G00970
Oryza punctata
OPUNC05G00970
I
0.677
ORUFI05G01110
Oryza rufipogon
ORUFI05G01110
I
0.677
Gorai.005G054900
Gossypium raimondii
Gorai.005G054900
I
0.677
SapurV1A.0096s0360
Salix purpurea
SapurV1A.0096s0360
I
0.677
BGIOSGA014750
Oryza indica
BGIOSGA014750
I
0.676
Bo7g088650
Brassica oleracea
Bo7g088650
I
0.676
LPERR04G14700
Leersia perrieri
LPERR04G14700
I
0.676
OB04G25360
Oryza brachyantha
OB04G25360
I
0.676
ORGLA04G0153500
Oryza glaberrima
ORGLA04G0153500
I
0.676
ORUFI04G19690
Oryza rufipogon
ORUFI04G19690
I
0.676
OS04G0508500
Oryza sativa
OS04G0508500
I
0.676
Pavir.Ga01308
Panicum virgatum
Pavir.Ga01308
I
0.676
Lus10023711.g
Linum usitatissimum
Lus10023711.g
I
0.675
MDP0000143156
Malus domestica
MDP0000143156
I
0.675
GSMUA_Achr2G16200_001
Musa acuminata
GSMUA_Achr2G16200_001
I
0.674
VIT_05s0049g02260
Vitis vinifera
VIT_05s0049g02260
I
0.674
Ca_07872
Cicer arietinum
Ca_07872
I
0.674
Ciclev10006914m.g
Citrus clementina
Ciclev10006914m.g
I
0.674
Gorai.001G207500
Gossypium raimondii
Gorai.001G207500
I
0.674
orange1.1g047839m.g
Citrus sinensis
orange1.1g047839m.g
I
0.674
ATMYB121
Arabidopsis thaliana
AT3G30210
D
0.673
Bo9g009020
Brassica oleracea
Bo9g009020
I
0.673
Bra025410
Brassica rapa
Bra025410
I
0.673
F775_14172
Aegilops tauschii
F775_14172
I
0.673
GSMUA_Achr10G26730_001
Musa acuminata
GSMUA_Achr10G26730_001
I
0.673
GSMUA_Achr7G13700_001
Musa acuminata
GSMUA_Achr7G13700_001
I
0.673
Traes_1BS_B44ECE28C
Triticum aestivum
Traes_1BS_B44ECE28C
I
0.673
Traes_1DS_47E2D90AC1
Triticum aestivum
Traes_1DS_47E2D90AC1
I
0.673
Traes_1DS_47E2D90AC
Triticum aestivum
Traes_1DS_47E2D90AC
I
0.673
Cla008413
Citrullus lanatus
Cla008413
I
0.673
Cucsa.213500
Cucumis sativus
Cucsa.213500
I
0.673
Bostr.0556s0619
Boechera stricta
Bostr.0556s0619
I
0.673
Cagra.1138s0003
Capsella grandiflora
Cagra.1138s0003
I
0.673
Carubv10018530m.g
Capsella rubella
Carubv10018530m.g
I
0.673
Gorai.001G090100
Gossypium raimondii
Gorai.001G090100
I
0.672
Si022826m.g
Setaria italica
Si022826m.g
I
0.670
Pavir.Ca00653
Panicum virgatum
Pavir.Ca00653
I
0.670
Pavir.J04129
Panicum virgatum
Pavir.J04129
I
0.670
ATMYB48
Arabidopsis thaliana
AT3G46130
I
0.669
MYB59
Arabidopsis thaliana
AT5G59780
D
0.669
ATMYB48-1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_5001097
I
0.669
MYB59
Arabidopsis lyrata
fgenesh2_kg.8__1928__AT5G59780.3
I
0.669
PRUPE_ppa015954mg
Prunus persica
PRUPE_ppa015954mg
I
0.669
Si026803m.g
Setaria italica
Si026803m.g
I
0.669
TCM_041904
Theobroma cacao
TCM_041904
I
0.669
VIT_06s0004g04140
Vitis vinifera
VIT_06s0004g04140
I
0.669
Pm000809
Prunus mume
Pm000809
I
0.669
Carubv10017875m.g
Capsella rubella
Carubv10017875m.g
I
0.669
evm.TU.supercontig_190.35
Carica papaya
evm.TU.supercontig_190.35
I
0.669
Gorai.003G136400
Gossypium raimondii
Gorai.003G136400
I
0.669
MDP0000177010
Malus domestica
MDP0000177010
I
0.669
orange1.1g023677m.g
Citrus sinensis
orange1.1g023677m.g
I
0.669
Pavir.Hb00058
Panicum virgatum
Pavir.Hb00058
I
0.669
Pavir.J08441
Panicum virgatum
Pavir.J08441
I
0.669
SapurV1A.0008s0940
Salix purpurea
SapurV1A.0008s0940
I
0.669
SapurV1A.0008s0950
Salix purpurea
SapurV1A.0008s0950
I
0.669
Thhalv10002648m.g
Eutrema salsugineum
Thhalv10002648m.g
I
0.669
Thhalv10014524m.g
Eutrema salsugineum
Thhalv10014524m.g
I
0.669
MYB5
Arabidopsis thaliana
AT3G13540
I
0.668
Bo1g138250
Brassica oleracea
Bo1g138250
I
0.668
GRMZM2G305856
Zea mays
GRMZM2G305856
I
0.668
Sb09g001590
Sorghum bicolor
Sb09g001590
I
0.668
ATMYB5
Arabidopsis lyrata
scaffold_301556.1
I
0.668
Solyc09g008390.1
Solanum lycopersicum
Solyc09g008390.1
I
0.668
cassava15759.m1
Manihot esculenta
cassava15759.m1
N
0.668
Bostr.3640s0147
Boechera stricta
Bostr.3640s0147
I
0.668
Gorai.013G265300
Gossypium raimondii
Gorai.013G265300
I
0.668
Thhalv10022057m.g
Eutrema salsugineum
Thhalv10022057m.g
I
0.668
PGSC0003DMG400015536
Solanum tuberosum
PGSC0003DMG400015536
I
0.667
Solyc11g073120.1
Solanum lycopersicum
Solyc11g073120.1
I
0.667
Bo3g130340
Brassica oleracea
Bo3g130340
I
0.666
Bra018223
Brassica rapa
Bra018223
I
0.666
Bra027423
Brassica rapa
Bra027423
I
0.666
GLYMA13G40830
Glycine max
GLYMA13G40830
I
0.666
GLYMA15G04620
Glycine max
GLYMA15G04620
I
0.666
POPTR_0001s24220
Populus trichocarpa
POPTR_0001s24220
I
0.666
POPTR_0009s03240
Populus trichocarpa
POPTR_0009s03240
I
0.666
PRUPE_ppa024805mg
Prunus persica
PRUPE_ppa024805mg
N
0.666
Cla013488
Citrullus lanatus
Cla013488
I
0.666
Cucsa.379880
Cucumis sativus
Cucsa.379880
I
0.666
Gorai.001G107900
Gossypium raimondii
Gorai.001G107900
I
0.666
SapurV1A.0040s0010
Salix purpurea
SapurV1A.0040s0010
I
0.666
SapurV1A.0489s0220
Salix purpurea
SapurV1A.0489s0220
I
0.666
Bra039395
Brassica rapa
Bra039395
I
0.665
Si024470m.g
Setaria italica
Si024470m.g
I
0.665
Pavir.Ca00655
Panicum virgatum
Pavir.Ca00655
I
0.665
Pavir.J36591
Panicum virgatum
Pavir.J36591
I
0.665
PK13689.1
Cannabis sativa
PK13689.1
I
0.665
MTR_4g063100
Medicago truncatula
MTR_4g063100
I
0.664
Pm026334
Prunus mume
Pm026334
N
0.663
LjT20L14.140.nd
Lotus japonicus
LjT20L14.140.nd
I
0.663
GLYMA10G06680
Glycine max
GLYMA10G06680
N
0.662
Lus10034372.g
Linum usitatissimum
Lus10034372.g
I
0.662