CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.2519s0060
(
Capsella grandiflora
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cagra.2519s0060
T286097_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.2519s0060.1.p
Myb
5
25
CIYIGLKRCGKSCRLRWANYL
Cagra.2519s0060.1.p
Myb
31
76
RGEFSPEEDDTIIKLHALKGNKWAAIAASLAGRTDNEIKNYWNTNL
Links
Other
Myb/SANT
family TFs
Other
Capsella grandiflora
TFs
126 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30147.m013749
Ricinus communis
30147.m013749
N
0.757
Al_scaffold_0002_1204
Arabidopsis lyrata
Al_scaffold_0002_1204
N
0.677
AtMYB10
Arabidopsis thaliana
AT3G12820
D
0.737
ATMYB48
Arabidopsis thaliana
AT3G46130
I
0.710
BGIOSGA002307
Oryza indica
BGIOSGA002307
N
0.730
BGIOSGA013008
Oryza indica
BGIOSGA013008
N
0.726
BGIOSGA027658
Oryza indica
BGIOSGA027658
N
0.706
BGIOSGA037085
Oryza indica
BGIOSGA037085
N
0.755
Bo2g011790
Brassica oleracea
Bo2g011790
N
0.687
Bo5g131980
Brassica oleracea
Bo5g131980
N
0.704
Bostr.18473s0331
Boechera stricta
Bostr.18473s0331
I
0.710
Bostr.26833s0259
Boechera stricta
Bostr.26833s0259
N
0.724
Bostr.3125s0001
Boechera stricta
Bostr.3125s0001
N
0.677
Bra009910
Brassica rapa
Bra009910
N
0.686
Bra031041
Brassica rapa
Bra031041
N
0.701
BRADI1G45510
Brachypodium distachyon
BRADI1G45510
I
0.728
BRADI2G11080
Brachypodium distachyon
BRADI2G11080
I
0.734
BRADI4G09490
Brachypodium distachyon
BRADI4G09490
N
0.706
Cagra.10637s0001
Capsella grandiflora
Cagra.10637s0001
I
0.710
Cagra.1317s0038
Capsella grandiflora
Cagra.1317s0038
N
0.719
Cagra.1390s0010
Capsella grandiflora
Cagra.1390s0010
I
0.769
Cagra.1655s0054
Capsella grandiflora
Cagra.1655s0054
N
0.683
Cagra.17198s0001
Capsella grandiflora
Cagra.17198s0001
N
0.704
cassava11833.valid.m1
Manihot esculenta
cassava11833.valid.m1
N
0.728
Ciclev10020307m.g
Citrus clementina
Ciclev10020307m.g
I
0.705
Ciclev10029019m.g
Citrus clementina
Ciclev10029019m.g
N
0.699
Cucsa.061660
Cucumis sativus
Cucsa.061660
I
0.750
Cucsa.379880
Cucumis sativus
Cucsa.379880
I
0.697
Eucgr.D02099
Eucalyptus grandis
Eucgr.D02099
N
0.745
Eucgr.J02073
Eucalyptus grandis
Eucgr.J02073
N
0.715
evm.TU.contig_33658
Carica papaya
evm.TU.contig_33658
N
0.730
evm.TU.supercontig_87.85
Carica papaya
evm.TU.supercontig_87.85
N
0.719
F775_22650
Aegilops tauschii
F775_22650
N
0.681
F775_32151
Aegilops tauschii
F775_32151
N
0.671
gene13970-v1.0-hybrid
Fragaria vesca
gene13970-v1.0-hybrid
N
0.715
GLYMA08G44950
Glycine max
GLYMA08G44950
N
0.710
GLYMA16G00920
Glycine max
GLYMA16G00920
I
0.760
Gorai.001G107900
Gossypium raimondii
Gorai.001G107900
I
0.715
Gorai.001G268000
Gossypium raimondii
Gorai.001G268000
I
0.695
Gorai.008G192900
Gossypium raimondii
Gorai.008G192900
I
0.680
Gorai.013G139200
Gossypium raimondii
Gorai.013G139200
I
0.750
GRMZM2G001223
Zea mays
GRMZM2G001223
I
0.771
GRMZM2G032180
Zea mays
GRMZM2G032180
N
0.723
GRMZM2G106558
Zea mays
GRMZM2G106558
I
0.695
GRMZM2G130149
Zea mays
GRMZM2G130149
I
0.714
LjSGA_148662.1
Lotus japonicus
LjSGA_148662.1
N
0.691
MDP0000139931
Malus domestica
MDP0000139931
N
0.709
MDP0000153773
Malus domestica
MDP0000153773
N
0.699
MDP0000169874
Malus domestica
MDP0000169874
N
0.709
MDP0000242612
Malus domestica
MDP0000242612
N
0.662
MDP0000475808
Malus domestica
MDP0000475808
N
0.733
mgf001247m
Mimulus guttatus
mgf001247m
N
0.707
mgf009707m
Mimulus guttatus
mgf009707m
N
0.674
mgf018110m
Mimulus guttatus
mgf018110m
N
0.674
mgf021749m
Mimulus guttatus
mgf021749m
N
0.730
mgf026463m
Mimulus guttatus
mgf026463m
N
0.685
mgf026560m
Mimulus guttatus
mgf026560m
N
0.698
MLOC_13019
Hordeum vulgare
MLOC_13019
I
0.730
MLOC_16981
Hordeum vulgare
MLOC_16981
I
0.723
MLOC_17928
Hordeum vulgare
MLOC_17928
I
0.700
MLOC_56753
Hordeum vulgare
MLOC_56753
I
0.674
MTR_2g096380
Medicago truncatula
MTR_2g096380
I
0.683
MTR_4g063100
Medicago truncatula
MTR_4g063100
I
0.690
MTR_6g055910
Medicago truncatula
MTR_6g055910
I
0.696
MTR_7g111290
Medicago truncatula
MTR_7g111290
I
0.742
MYB114
Arabidopsis thaliana
AT1G66380
I
0.677
MYB21
Arabidopsis thaliana
AT3G27810
I
0.731
MYB24
Arabidopsis thaliana
AT5G40350
D
0.747
MYB27
Arabidopsis thaliana
AT3G53200
D
0.749
MYB59
Arabidopsis thaliana
AT5G59780
D
0.719
MYB86
Arabidopsis thaliana
AT5G26660
I
0.712
MYB94
Arabidopsis thaliana
AT3G47600
D
0.696
OBART12G16130
Oryza barthii
OBART12G16130
N
0.714
OGLUM12G17720
Oryza glumaepatula
OGLUM12G17720
N
0.714
orange1.1g023677m.g
Citrus sinensis
orange1.1g023677m.g
I
0.699
orange1.1g044587m.g
Citrus sinensis
orange1.1g044587m.g
N
0.715
ORGLA01G0040600
Oryza glaberrima
ORGLA01G0040600
N
0.701
OS01G0975300
Oryza sativa
OS01G0975300
N
0.704
Pavir.Fa00877
Panicum virgatum
Pavir.Fa00877
I
0.751
Pavir.Gb01276
Panicum virgatum
Pavir.Gb01276
N
0.739
Pavir.Gb02200
Panicum virgatum
Pavir.Gb02200
I
0.661
Pavir.Ha00303
Panicum virgatum
Pavir.Ha00303
I
0.702
Pavir.Ia02093
Panicum virgatum
Pavir.Ia02093
N
0.682
Pavir.J19088
Panicum virgatum
Pavir.J19088
N
0.694
Pavir.J23620
Panicum virgatum
Pavir.J23620
N
0.739
Pavir.J24653
Panicum virgatum
Pavir.J24653
N
0.708
PDK_20s1316381g001
Phoenix dactylifera
PDK_20s1316381g001
N
0.685
PDK_20s1338951g004
Phoenix dactylifera
PDK_20s1338951g004
N
0.673
PDK_20s1354851g002
Phoenix dactylifera
PDK_20s1354851g002
N
0.752
PDK_20s1376841g001
Phoenix dactylifera
PDK_20s1376841g001
N
0.747
PDK_20s1415541g003
Phoenix dactylifera
PDK_20s1415541g003
N
0.661
PDK_20s1528141g001
Phoenix dactylifera
PDK_20s1528141g001
N
0.714
PDK_20s1933711g001
Phoenix dactylifera
PDK_20s1933711g001
N
0.707
PGSC0003DMG400013172
Solanum tuberosum
PGSC0003DMG400013172
N
0.663
PK27824.1
Cannabis sativa
PK27824.1
N
0.714
Pm029438
Prunus mume
Pm029438
N
0.696
POPTR_0006s23810
Populus trichocarpa
POPTR_0006s23810
I
0.778
PRUPE_ppa008906mg
Prunus persica
PRUPE_ppa008906mg
I
0.730
SapurV1A.0040s0010
Salix purpurea
SapurV1A.0040s0010
I
0.715
SapurV1A.0093s0250
Salix purpurea
SapurV1A.0093s0250
I
0.669
SapurV1A.0177s0130
Salix purpurea
SapurV1A.0177s0130
I
0.711
SapurV1A.0263s0400
Salix purpurea
SapurV1A.0263s0400
I
0.749
SapurV1A.0489s0220
Salix purpurea
SapurV1A.0489s0220
I
0.715
SapurV1A.0552s0030
Salix purpurea
SapurV1A.0552s0030
I
0.699
SapurV1A.1387s0090
Salix purpurea
SapurV1A.1387s0090
I
0.672
Sb08g018580
Sorghum bicolor
Sb08g018580
I
0.714
Si003873m.g
Setaria italica
Si003873m.g
N
0.682
TCM_005371
Theobroma cacao
TCM_005371
I
0.708
TCM_013983
Theobroma cacao
TCM_013983
I
0.680
TCM_021433
Theobroma cacao
TCM_021433
I
0.683
TCM_032927
Theobroma cacao
TCM_032927
I
0.706
Thhalv10014524m.g
Eutrema salsugineum
Thhalv10014524m.g
I
0.719
Traes_2AL_E8C400686
Triticum aestivum
Traes_2AL_E8C400686
N
0.670
Traes_2BL_DAA2104F5
Triticum aestivum
Traes_2BL_DAA2104F5
N
0.756
Traes_2DL_304E62CCE
Triticum aestivum
Traes_2DL_304E62CCE
N
0.713
Traes_2DS_EEE59C2E7
Triticum aestivum
Traes_2DS_EEE59C2E7
N
0.674
Traes_3DL_75F8A05CF
Triticum aestivum
Traes_3DL_75F8A05CF
N
0.671
Traes_5AS_7D519210E
Triticum aestivum
Traes_5AS_7D519210E
N
0.714
Traes_5AS_D9A4C1AB0
Triticum aestivum
Traes_5AS_D9A4C1AB0
N
0.702
Traes_5BS_D1C03C165
Triticum aestivum
Traes_5BS_D1C03C165
N
0.714
Traes_5DS_1EF547639
Triticum aestivum
Traes_5DS_1EF547639
N
0.714
TRIUR3_12300
Triticum urartu
TRIUR3_12300
N
0.715
TRIUR3_32110
Triticum urartu
TRIUR3_32110
N
0.676
TRIUR3_33813
Triticum urartu
TRIUR3_33813
N
0.661
TT2
Arabidopsis thaliana
AT5G35550
I
0.732
WER
Arabidopsis thaliana
AT5G14750
D
0.726