CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10001328m.g
(
Capsella rubella
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Carubv10001328m.g
T286213_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB51
M07010_2.00
Arabidopsis thaliana
NHNHHNHNNNYYYACCWACYW
WRGTWGGTRRRNNNDNDDNDN
Dap-seq
OMalley et al.(2016)
MYB51_col_a
0.729
0.774
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10001328m
Myb
14
61
KGAWTTEEDKKLISYIHEHGEGGWRDIPQKAGLKRCGKSCRLRWANYL
Carubv10001328m
Myb
67
112
RGEFSYEEEQIIIMLHASRGNKWSVIARHLPKRTDNEIKNYWNTHL
Links
Other
Myb/SANT
family TFs
Other
Capsella rubella
TFs
90 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.2925s0017
Capsella grandiflora
Cagra.2925s0017
I
0.909
Bo9g175680
Brassica oleracea
Bo9g175680
I
0.899
MYB29
Arabidopsis thaliana
AT5G07690
I
0.892
Bostr.13129s0197
Boechera stricta
Bostr.13129s0197
I
0.892
Thhalv10013952m.g
Eutrema salsugineum
Thhalv10013952m.g
I
0.892
Bra005949
Brassica rapa
Bra005949
I
0.877
MYB29
Arabidopsis lyrata
fgenesh2_kg.6__738__AT5G07690.1
I
0.876
Bo9g014610
Brassica oleracea
Bo9g014610
I
0.875
Bra035929
Brassica rapa
Bra035929
I
0.875
Thhalv10004407m.g
Eutrema salsugineum
Thhalv10004407m.g
I
0.875
Bo3g004500
Brassica oleracea
Bo3g004500
I
0.869
Bo7g098590
Brassica oleracea
Bo7g098590
I
0.865
Bra012961
Brassica rapa
Bra012961
I
0.865
MYB76
Arabidopsis thaliana
AT5G07700
I
0.853
MYB28
Arabidopsis thaliana
AT5G61420
I
0.845
MYB28
Arabidopsis lyrata
scaffold_802785.1
I
0.845
Bostr.26833s0098
Boechera stricta
Bostr.26833s0098
I
0.845
Cagra.0542s0036
Capsella grandiflora
Cagra.0542s0036
I
0.845
Carubv10027861m.g
Capsella rubella
Carubv10027861m.g
I
0.845
MYB76
Arabidopsis lyrata
Al_scaffold_0006_698
I
0.836
cassava44039.valid.m1
Manihot esculenta
cassava44039.valid.m1
I
0.836
Bo2g161590
Brassica oleracea
Bo2g161590
I
0.828
cassava46146.m1
Manihot esculenta
cassava46146.m1
I
0.828
Lus10019085.g
Linum usitatissimum
Lus10019085.g
I
0.821
Bra029311
Brassica rapa
Bra029311
I
0.820
cassava47112.m1
Manihot esculenta
cassava47112.m1
I
0.797
cassava46145.m1
Manihot esculenta
cassava46145.m1
I
0.783
Bostr.13129s0196
Boechera stricta
Bostr.13129s0196
I
0.773
evm.TU.supercontig_3.239
Carica papaya
evm.TU.supercontig_3.239
I
0.760
PK27708.1
Cannabis sativa
PK27708.1
I
0.738
Bo5g025570
Brassica oleracea
Bo5g025570
I
0.733
Bra025666
Brassica rapa
Bra025666
I
0.733
Thhalv10008152m.g
Eutrema salsugineum
Thhalv10008152m.g
I
0.733
Bo6g118350
Brassica oleracea
Bo6g118350
I
0.731
Bra015939
Brassica rapa
Bra015939
I
0.731
ATMYB122
Arabidopsis lyrata
fgenesh2_kg.2__1680__AT1G74080.1
I
0.731
MYB51
Arabidopsis thaliana
AT1G18570
D
0.729
MYB51
Arabidopsis lyrata
fgenesh2_kg.1__2031__AT1G18570.1
I
0.729
Bostr.7128s0464
Boechera stricta
Bostr.7128s0464
I
0.729
Cagra.4153s0023
Capsella grandiflora
Cagra.4153s0023
I
0.729
Carubv10009563m.g
Capsella rubella
Carubv10009563m.g
I
0.729
MYB122
Arabidopsis thaliana
AT1G74080
I
0.726
Bo2g080900
Brassica oleracea
Bo2g080900
I
0.725
Bo8g104300
Brassica oleracea
Bo8g104300
I
0.723
Bra031035
Brassica rapa
Bra031035
I
0.723
Bo8g067910
Brassica oleracea
Bo8g067910
I
0.721
Bra016553
Brassica rapa
Bra016553
I
0.721
Bo9g014380
Brassica oleracea
Bo9g014380
I
0.719
Bra035954
Brassica rapa
Bra035954
I
0.719
PK14811.1
Cannabis sativa
PK14811.1
I
0.719
Bra008131
Brassica rapa
Bra008131
I
0.715
TCM_014091
Theobroma cacao
TCM_014091
I
0.711
Thhalv10018705m.g
Eutrema salsugineum
Thhalv10018705m.g
I
0.711
MYB34
Arabidopsis thaliana
AT5G60890
I
0.709
Bra013000
Brassica rapa
Bra013000
I
0.709
ATMYB34
Arabidopsis lyrata
fgenesh2_kg.8__2056__AT5G60890.1
I
0.709
Bostr.26833s0149
Boechera stricta
Bostr.26833s0149
I
0.709
Carubv10027524m.g
Capsella rubella
Carubv10027524m.g
I
0.709
Thhalv10004638m.g
Eutrema salsugineum
Thhalv10004638m.g
I
0.709
Gorai.003G097900
Gossypium raimondii
Gorai.003G097900
I
0.707
Bo7g098110
Brassica oleracea
Bo7g098110
I
0.706
PK01174.1
Cannabis sativa
PK01174.1
I
0.704
Bo2g161180
Brassica oleracea
Bo2g161180
I
0.689
Bra029349
Brassica rapa
Bra029349
I
0.689
POPTR_0014s11780
Populus trichocarpa
POPTR_0014s11780
I
0.684
cassava24756.valid.m1
Manihot esculenta
cassava24756.valid.m1
I
0.681
gene12738-v1.0-hybrid
Fragaria vesca
gene12738-v1.0-hybrid
I
0.681
SapurV1A.0180s0510
Salix purpurea
SapurV1A.0180s0510
I
0.681
Lus10028435.g
Linum usitatissimum
Lus10028435.g
I
0.680
Lus10041888.g
Linum usitatissimum
Lus10041888.g
I
0.680
Bra009245
Brassica rapa
Bra009245
N
0.677
evm.TU.supercontig_28.71
Carica papaya
evm.TU.supercontig_28.71
I
0.676
MTR_2g034790
Medicago truncatula
MTR_2g034790
I
0.675
Bra029350
Brassica rapa
Bra029350
I
0.674
Carubv10020723m.g
Capsella rubella
Carubv10020723m.g
I
0.674
Eucgr.G01774
Eucalyptus grandis
Eucgr.G01774
I
0.674
POPTR_0002s19920
Populus trichocarpa
POPTR_0002s19920
I
0.672
BGIOSGA003345
Oryza indica
BGIOSGA003345
I
0.671
OGLUM01G14390
Oryza glumaepatula
OGLUM01G14390
I
0.671
ORUFI01G13920
Oryza rufipogon
ORUFI01G13920
I
0.671
OS01G0305900
Oryza sativa
OS01G0305900
I
0.671
cassava17115.m1
Manihot esculenta
cassava17115.m1
I
0.671
Cla013211
Citrullus lanatus
Cla013211
I
0.668
Cucsa.318610
Cucumis sativus
Cucsa.318610
I
0.668
GLYMA17G03480
Glycine max
GLYMA17G03480
I
0.666
MTR_4g121460
Medicago truncatula
MTR_4g121460
I
0.666
TCM_011660
Theobroma cacao
TCM_011660
I
0.664
VIT_13s0084g00530
Vitis vinifera
VIT_13s0084g00530
I
0.664
Eucgr.C03554
Eucalyptus grandis
Eucgr.C03554
I
0.663
SapurV1A.0158s0390
Salix purpurea
SapurV1A.0158s0390
I
0.662