CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10003403m.g
(
Capsella rubella
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Carubv10003403m.g
T286238_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10003403m
Myb
31
74
VNMSQEEEDLVCRMHKLVGDRWGLIAGRIPGRTAEEIERFWVMK
Links
Other
Myb/SANT
family TFs
Other
Capsella rubella
TFs
107 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.1372s0017
Capsella grandiflora
Cagra.1372s0017
N
0.909
Bostr.7365s0058
Boechera stricta
Bostr.7365s0058
N
0.896
Thhalv10029104m.g
Eutrema salsugineum
Thhalv10029104m.g
N
0.874
Bo2g098940
Brassica oleracea
Bo2g098940
N
0.855
Bra008539
Brassica rapa
Bra008539
N
0.855
ETC3
Arabidopsis thaliana
AT4G01060
N
0.849
ETC3
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002892
N
0.832
Bo3g054440
Brassica oleracea
Bo3g054440
N
0.827
Bra000941
Brassica rapa
Bra000941
N
0.827
SapurV1A.0013s0580
Salix purpurea
SapurV1A.0013s0580
N
0.815
PRUPE_ppa023853mg
Prunus persica
PRUPE_ppa023853mg
N
0.813
Pm018400
Prunus mume
Pm018400
N
0.813
Gorai.007G107400
Gossypium raimondii
Gorai.007G107400
N
0.807
PGSC0003DMG400000212
Solanum tuberosum
PGSC0003DMG400000212
N
0.800
Solyc01g095640.1
Solanum lycopersicum
Solyc01g095640.1
N
0.800
POPTR_0014s09200
Populus trichocarpa
POPTR_0014s09200
N
0.795
TCM_005177
Theobroma cacao
TCM_005177
N
0.794
cassava32987.m1
Manihot esculenta
cassava32987.m1
N
0.794
cassava46504.m1
Manihot esculenta
cassava46504.m1
N
0.794
Ciclev10024111m.g
Citrus clementina
Ciclev10024111m.g
N
0.794
Eucgr.E00069
Eucalyptus grandis
Eucgr.E00069
N
0.794
orange1.1g034546m.g
Citrus sinensis
orange1.1g034546m.g
N
0.794
Ciclev10006315m.g
Citrus clementina
Ciclev10006315m.g
N
0.791
POPTR_0002s17030
Populus trichocarpa
POPTR_0002s17030
N
0.790
gene19217-v1.0-hybrid
Fragaria vesca
gene19217-v1.0-hybrid
N
0.790
MDP0000583070
Malus domestica
MDP0000583070
N
0.790
Lus10005949.g
Linum usitatissimum
Lus10005949.g
N
0.784
VIT_15s0046g01130
Vitis vinifera
VIT_15s0046g01130
N
0.773
MDP0000141474
Malus domestica
MDP0000141474
N
0.769
MTR_5g009460
Medicago truncatula
MTR_5g009460
N
0.763
Ca_15029
Cicer arietinum
Ca_15029
N
0.763
Eucgr.D02360
Eucalyptus grandis
Eucgr.D02360
N
0.760
Gorai.001G155700
Gossypium raimondii
Gorai.001G155700
N
0.758
Bo9g110930
Brassica oleracea
Bo9g110930
N
0.755
evm.TU.supercontig_3.55
Carica papaya
evm.TU.supercontig_3.55
N
0.753
SapurV1A.0190s0070
Salix purpurea
SapurV1A.0190s0070
N
0.749
SapurV1A.2295s0020
Salix purpurea
SapurV1A.2295s0020
N
0.749
SapurV1A.2893s0010
Salix purpurea
SapurV1A.2893s0010
N
0.749
GLYMA01G43435
Glycine max
GLYMA01G43435
N
0.748
VIT_16s0050g02530
Vitis vinifera
VIT_16s0050g02530
N
0.747
ETC1
Arabidopsis lyrata
Al_scaffold_0001_92
N
0.746
ETC1
Arabidopsis thaliana
AT1G01380
N
0.746
Bostr.5325s0057
Boechera stricta
Bostr.5325s0057
N
0.746
Cagra.1968s0081
Capsella grandiflora
Cagra.1968s0081
N
0.746
Carubv10011382m.g
Capsella rubella
Carubv10011382m.g
N
0.746
Aquca_037_00095
Aquilegia coerulea
Aquca_037_00095
N
0.745
Bra026297
Brassica rapa
Bra026297
N
0.743
29742.m001447
Ricinus communis
29742.m001447
N
0.742
Bo3g022870
Brassica oleracea
Bo3g022870
N
0.740
30169.m006531
Ricinus communis
30169.m006531
N
0.739
Bo9g003750
Brassica oleracea
Bo9g003750
N
0.736
Bra037388
Brassica rapa
Bra037388
N
0.736
GLYMA11G02061
Glycine max
GLYMA11G02061
N
0.736
TRY
Arabidopsis thaliana
AT5G53200
N
0.734
TRY
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_8001350
N
0.734
Cucsa.201970
Cucumis sativus
Cucsa.201970
N
0.734
Bostr.26833s0960
Boechera stricta
Bostr.26833s0960
N
0.734
Cagra.0084s0067
Capsella grandiflora
Cagra.0084s0067
N
0.734
Carubv10027412m.g
Capsella rubella
Carubv10027412m.g
N
0.734
Thhalv10015741m.g
Eutrema salsugineum
Thhalv10015741m.g
N
0.734
POPTR_0015s02310
Populus trichocarpa
POPTR_0015s02310
N
0.733
TCM_016428
Theobroma cacao
TCM_016428
N
0.730
GSMUA_Achr8G19880_001
Musa acuminata
GSMUA_Achr8G19880_001
N
0.727
Carubv10024393m.g
Capsella rubella
Carubv10024393m.g
N
0.726
Cla011563
Citrullus lanatus
Cla011563
N
0.720
Aquca_013_00134
Aquilegia coerulea
Aquca_013_00134
N
0.716
SapurV1A.0346s0010
Salix purpurea
SapurV1A.0346s0010
N
0.712
SapurV1A.0377s0050
Salix purpurea
SapurV1A.0377s0050
N
0.712
SapurV1A.1227s0050
Salix purpurea
SapurV1A.1227s0050
N
0.712
GSMUA_Achr1G05080_001
Musa acuminata
GSMUA_Achr1G05080_001
N
0.705
CPC
Arabidopsis thaliana
AT2G46410
N
0.700
Bo3g039260
Brassica oleracea
Bo3g039260
N
0.700
Bo4g009260
Brassica oleracea
Bo4g009260
N
0.700
Bo4g197120
Brassica oleracea
Bo4g197120
N
0.700
Bra004539
Brassica rapa
Bra004539
N
0.700
Bra039283
Brassica rapa
Bra039283
N
0.700
Bostr.25993s0128
Boechera stricta
Bostr.25993s0128
N
0.700
Cagra.0050s0058
Capsella grandiflora
Cagra.0050s0058
N
0.700
Carubv10024406m.g
Capsella rubella
Carubv10024406m.g
N
0.700
Thhalv10001695m.g
Eutrema salsugineum
Thhalv10001695m.g
N
0.700
GSMUA_AchrUn_randomG19730_001
Musa acuminata
GSMUA_AchrUn_randomG19730_001
N
0.696
Carubv10024964m.g
Capsella rubella
Carubv10024964m.g
N
0.696
scaffold_401530.1
Arabidopsis lyrata
scaffold_401530.1
N
0.695
TCM_015351
Theobroma cacao
TCM_015351
N
0.695
TCL1
Arabidopsis thaliana
AT2G30432
N
0.692
TCL1
Arabidopsis lyrata
fgenesh2_kg.4__1015__AT2G30432.1
N
0.692
Bo2g046050
Brassica oleracea
Bo2g046050
N
0.688
evm.TU.contig_29502
Carica papaya
evm.TU.contig_29502
N
0.687
Thhalv10009233m.g
Eutrema salsugineum
Thhalv10009233m.g
N
0.684
CPC
Arabidopsis lyrata
Al_scaffold_0005_3105
N
0.682
TCL2
Arabidopsis thaliana
AT2G30424
N
0.682
TCL2
Arabidopsis lyrata
scaffold_401531.1
N
0.682
Bostr.13158s0169
Boechera stricta
Bostr.13158s0169
N
0.682
Bostr.24513s0195
Boechera stricta
Bostr.24513s0195
N
0.682
Cagra.0483s0079
Capsella grandiflora
Cagra.0483s0079
N
0.682
POPTR_0012s01420
Populus trichocarpa
POPTR_0012s01420
N
0.681
Lus10038822.g
Linum usitatissimum
Lus10038822.g
N
0.681
PDK_20s1307674g001
Phoenix dactylifera
PDK_20s1307674g001
N
0.674
PDK_20s1335581g001
Phoenix dactylifera
PDK_20s1335581g001
N
0.674
Al_scaffold_0136_3
Arabidopsis lyrata
Al_scaffold_0136_3
N
0.673
Cagra.0567s0009
Capsella grandiflora
Cagra.0567s0009
N
0.673
MTR_2g088730
Medicago truncatula
MTR_2g088730
N
0.672
MDP0000547418
Malus domestica
MDP0000547418
N
0.667
MDP0000718806
Malus domestica
MDP0000718806
N
0.667
Bo8g117860
Brassica oleracea
Bo8g117860
N
0.665
Bra032635
Brassica rapa
Bra032635
N
0.665
Carubv10025583m.g
Capsella rubella
Carubv10025583m.g
N
0.665