Carubv10003623m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10003623m.g T286240_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G04760
M02304_2.00 		Arabidopsis thaliana
NDGATAAGGN
NCCTTATCHN		 PBM
Weirauch et al.(2014)
pTH7079 		0.896 0.989
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10003623m Myb 3 51
Carubv10003623m Myb 97 144

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_600421.1 Arabidopsis lyrata scaffold_600421.1 I 0.909
Cagra.5249s0014 Capsella grandiflora Cagra.5249s0014 I 0.909
AT5G04760 Arabidopsis thaliana AT5G04760 D 0.896
Bo3g002960 Brassica oleracea Bo3g002960 I 0.890
Bo9g178980 Brassica oleracea Bo9g178980 I 0.884
Bra009432 Brassica rapa Bra009432 I 0.884
Bostr.13129s0486 Boechera stricta Bostr.13129s0486 I 0.884
Bra005818 Brassica rapa Bra005818 I 0.880
Thhalv10014613m.g Eutrema salsugineum Thhalv10014613m.g I 0.849
Bra028780 Brassica rapa Bra028780 I 0.816
Bo2g006670 Brassica oleracea Bo2g006670 I 0.794
Ciclev10016071m.g Citrus clementina Ciclev10016071m.g I 0.745
GLYMA10G42450 Glycine max GLYMA10G42450 I 0.744
GLYMA20G24600 Glycine max GLYMA20G24600 I 0.744
Ca_05454 Cicer arietinum Ca_05454 I 0.729
MTR_1g111830 Medicago truncatula MTR_1g111830 I 0.719
gene23544-v1.0-hybrid Fragaria vesca gene23544-v1.0-hybrid I 0.703
VIT_06s0080g00790 Vitis vinifera VIT_06s0080g00790 I 0.701
SapurV1A.0036s0350 Salix purpurea SapurV1A.0036s0350 I 0.695
Gorai.006G118200 Gossypium raimondii Gorai.006G118200 I 0.690
SapurV1A.0450s0110 Salix purpurea SapurV1A.0450s0110 I 0.685
SapurV1A.1671s0040 Salix purpurea SapurV1A.1671s0040 I 0.685
TCM_041160 Theobroma cacao TCM_041160 I 0.684
MDP0000289018 Malus domestica MDP0000289018 I 0.684
POPTR_0010s24710 Populus trichocarpa POPTR_0010s24710 I 0.681
PRUPE_ppa010926mg Prunus persica PRUPE_ppa010926mg I 0.679
Pm017050 Prunus mume Pm017050 I 0.679
30055.m001589 Ricinus communis 30055.m001589 I 0.671
30155.m001616 Ricinus communis 30155.m001616 I 0.671