CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10006317m.g
(
Capsella rubella
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Carubv10006317m.g
T286258_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10006317m
Myb
229
279
KITWTDGLQDLFLQAIRHIGLDKAVPKKILAFMNVPDLTRENIASHLQKYR
Links
Other
Myb/SANT
family TFs
Other
Capsella rubella
TFs
39 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ARR21
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6000557
N
0.877
Bostr.13129s0247
Boechera stricta
Bostr.13129s0247
N
0.877
Carubv10003421m.g
Capsella rubella
Carubv10003421m.g
N
0.877
Bo9g175250
Brassica oleracea
Bo9g175250
N
0.869
Bra009284
Brassica rapa
Bra009284
N
0.869
Thhalv10016040m.g
Eutrema salsugineum
Thhalv10016040m.g
N
0.838
ARR21
Arabidopsis thaliana
AT5G07210
N
0.807
Carubv10007858m.g
Capsella rubella
Carubv10007858m.g
N
0.807
Bo2g007540
Brassica oleracea
Bo2g007540
N
0.799
Bra028705
Brassica rapa
Bra028705
N
0.799
Bra005928
Brassica rapa
Bra005928
N
0.781
cassava21270.m1
Manihot esculenta
cassava21270.m1
N
0.767
Cagra.6496s0001
Capsella grandiflora
Cagra.6496s0001
N
0.758
Ciclev10006834m.g
Citrus clementina
Ciclev10006834m.g
N
0.756
orange1.1g043479m.g
Citrus sinensis
orange1.1g043479m.g
N
0.756
PRUPE_ppa023185mg
Prunus persica
PRUPE_ppa023185mg
N
0.737
30147.m014309
Ricinus communis
30147.m014309
N
0.737
gene13325-v1.0-hybrid
Fragaria vesca
gene13325-v1.0-hybrid
N
0.737
Bo3g004250
Brassica oleracea
Bo3g004250
N
0.727
Ciclev10006586m.g
Citrus clementina
Ciclev10006586m.g
N
0.722
orange1.1g040406m.g
Citrus sinensis
orange1.1g040406m.g
N
0.722
TRIUR3_30130
Triticum urartu
TRIUR3_30130
I
0.708
Ca_20899
Cicer arietinum
Ca_20899
I
0.708
cassava35050.m1
Manihot esculenta
cassava35050.m1
N
0.700
POPTR_0015s13860
Populus trichocarpa
POPTR_0015s13860
I
0.695
mgf019327m
Mimulus guttatus
mgf019327m
N
0.693
GSMUA_Achr10G23650_001
Musa acuminata
GSMUA_Achr10G23650_001
N
0.690
F775_03134
Aegilops tauschii
F775_03134
I
0.687
F775_03846
Aegilops tauschii
F775_03846
I
0.687
TRIUR3_20429
Triticum urartu
TRIUR3_20429
I
0.687
TRIUR3_25232
Triticum urartu
TRIUR3_25232
I
0.687
ARR13
Arabidopsis thaliana
AT2G27070
N
0.683
MDP0000228719
Malus domestica
MDP0000228719
N
0.677
POPTR_0012s13900
Populus trichocarpa
POPTR_0012s13900
N
0.676
cassava37074.valid.m1
Manihot esculenta
cassava37074.valid.m1
I
0.670
cassava37075.valid.m1
Manihot esculenta
cassava37075.valid.m1
I
0.670
Gorai.001G030600
Gossypium raimondii
Gorai.001G030600
I
0.670
Cla006313
Citrullus lanatus
Cla006313
N
0.662
Cucsa.251000
Cucumis sativus
Cucsa.251000
N
0.662