CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10009563m.g
(
Capsella rubella
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Carubv10009563m.g
T286287_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB51
M07010_2.00
Arabidopsis thaliana
NHNHHNHNNNYYYACCWACYW
WRGTWGGTRRRNNNDNDDNDN
Dap-seq
OMalley et al.(2016)
MYB51_col_a
0.892
0.989
MYB3
M02288_2.00
Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN
PBM
Weirauch et al.(2014)
pTH7125
0.666
0.731
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10009563m
Myb
15
62
KGAWTPEEDQKLLSYLNRHGEGGWRTLPEKAGLKRCGKSCRLRWANYL
Carubv10009563m
Myb
68
113
RGEFTDDEERSIISLHALHGNKWSAIARGLPGRTDNEIKNYWNTHI
Links
Other
Myb/SANT
family TFs
Other
Capsella rubella
TFs
210 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.4153s0023
Capsella grandiflora
Cagra.4153s0023
I
0.909
MYB51
Arabidopsis thaliana
AT1G18570
D
0.892
Bostr.7128s0464
Boechera stricta
Bostr.7128s0464
I
0.892
Thhalv10008152m.g
Eutrema salsugineum
Thhalv10008152m.g
I
0.889
MYB51
Arabidopsis lyrata
fgenesh2_kg.1__2031__AT1G18570.1
I
0.883
Bo8g104300
Brassica oleracea
Bo8g104300
I
0.871
Bra031035
Brassica rapa
Bra031035
I
0.862
Bo8g067910
Brassica oleracea
Bo8g067910
I
0.860
Bo5g025570
Brassica oleracea
Bo5g025570
I
0.850
Bra025666
Brassica rapa
Bra025666
I
0.850
Bra016553
Brassica rapa
Bra016553
I
0.839
ATMYB122
Arabidopsis lyrata
fgenesh2_kg.2__1680__AT1G74080.1
I
0.801
MYB122
Arabidopsis thaliana
AT1G74080
I
0.796
Bo9g014380
Brassica oleracea
Bo9g014380
I
0.791
Bra035954
Brassica rapa
Bra035954
I
0.782
Bo6g118350
Brassica oleracea
Bo6g118350
I
0.777
Bra015939
Brassica rapa
Bra015939
I
0.777
MYB34
Arabidopsis thaliana
AT5G60890
I
0.772
Bo7g098110
Brassica oleracea
Bo7g098110
I
0.772
Bra013000
Brassica rapa
Bra013000
I
0.772
ATMYB34
Arabidopsis lyrata
fgenesh2_kg.8__2056__AT5G60890.1
I
0.772
Bostr.26833s0149
Boechera stricta
Bostr.26833s0149
I
0.772
Carubv10027524m.g
Capsella rubella
Carubv10027524m.g
I
0.772
Thhalv10004638m.g
Eutrema salsugineum
Thhalv10004638m.g
I
0.772
Bo2g080900
Brassica oleracea
Bo2g080900
I
0.762
Thhalv10018705m.g
Eutrema salsugineum
Thhalv10018705m.g
I
0.757
Bo2g161180
Brassica oleracea
Bo2g161180
I
0.752
Bra008131
Brassica rapa
Bra008131
I
0.752
Bra029349
Brassica rapa
Bra029349
I
0.752
Carubv10020723m.g
Capsella rubella
Carubv10020723m.g
I
0.751
Bra005949
Brassica rapa
Bra005949
I
0.737
cassava44039.valid.m1
Manihot esculenta
cassava44039.valid.m1
I
0.733
MYB29
Arabidopsis thaliana
AT5G07690
I
0.729
Bostr.13129s0197
Boechera stricta
Bostr.13129s0197
I
0.729
Cagra.2925s0017
Capsella grandiflora
Cagra.2925s0017
I
0.729
Carubv10001328m.g
Capsella rubella
Carubv10001328m.g
I
0.729
Thhalv10013952m.g
Eutrema salsugineum
Thhalv10013952m.g
I
0.729
Bra029350
Brassica rapa
Bra029350
I
0.726
cassava46146.m1
Manihot esculenta
cassava46146.m1
I
0.725
cassava47112.m1
Manihot esculenta
cassava47112.m1
I
0.725
Lus10019085.g
Linum usitatissimum
Lus10019085.g
I
0.725
Bo9g175680
Brassica oleracea
Bo9g175680
I
0.719
MYB28
Arabidopsis thaliana
AT5G61420
I
0.718
Bo2g161590
Brassica oleracea
Bo2g161590
I
0.718
Bo9g014610
Brassica oleracea
Bo9g014610
I
0.718
Bra035929
Brassica rapa
Bra035929
I
0.718
MYB28
Arabidopsis lyrata
scaffold_802785.1
I
0.718
Bostr.26833s0098
Boechera stricta
Bostr.26833s0098
I
0.718
Cagra.0542s0036
Capsella grandiflora
Cagra.0542s0036
I
0.718
Carubv10027861m.g
Capsella rubella
Carubv10027861m.g
I
0.718
Thhalv10004407m.g
Eutrema salsugineum
Thhalv10004407m.g
I
0.718
evm.TU.supercontig_3.239
Carica papaya
evm.TU.supercontig_3.239
I
0.717
PK14811.1
Cannabis sativa
PK14811.1
I
0.717
MYB29
Arabidopsis lyrata
fgenesh2_kg.6__738__AT5G07690.1
I
0.714
PK27708.1
Cannabis sativa
PK27708.1
I
0.713
MYB76
Arabidopsis lyrata
Al_scaffold_0006_698
I
0.712
MYB76
Arabidopsis thaliana
AT5G07700
I
0.712
Bo2g161170
Brassica oleracea
Bo2g161170
I
0.708
Bo7g098590
Brassica oleracea
Bo7g098590
I
0.708
Bra012961
Brassica rapa
Bra012961
I
0.708
Bo3g004500
Brassica oleracea
Bo3g004500
I
0.706
Bostr.3288s0058
Boechera stricta
Bostr.3288s0058
I
0.706
Eucgr.I00012
Eucalyptus grandis
Eucgr.I00012
I
0.704
gene12738-v1.0-hybrid
Fragaria vesca
gene12738-v1.0-hybrid
I
0.696
Lus10028435.g
Linum usitatissimum
Lus10028435.g
I
0.695
Lus10041888.g
Linum usitatissimum
Lus10041888.g
I
0.695
Bra029311
Brassica rapa
Bra029311
I
0.694
GSMUA_Achr6G07260_001
Musa acuminata
GSMUA_Achr6G07260_001
I
0.691
GSMUA_Achr6G25420_001
Musa acuminata
GSMUA_Achr6G25420_001
I
0.691
GSMUA_Achr9G08600_001
Musa acuminata
GSMUA_Achr9G08600_001
I
0.691
Eucgr.C03554
Eucalyptus grandis
Eucgr.C03554
I
0.688
AMTR_s00024p00250970
Amborella trichopoda
AMTR_s00024p00250970
I
0.684
MYB6
Arabidopsis thaliana
AT4G09460
I
0.684
BGIOSGA018002
Oryza indica
BGIOSGA018002
I
0.684
Bo3g044210
Brassica oleracea
Bo3g044210
I
0.684
Bra000680
Brassica rapa
Bra000680
I
0.684
BRADI2G24400
Brachypodium distachyon
BRADI2G24400
I
0.684
AtMYB6
Arabidopsis lyrata
fgenesh2_kg.6__2929__AT4G09460.1
I
0.684
MLOC_71041
Hordeum vulgare
MLOC_71041
I
0.684
ORUFI05G18670
Oryza rufipogon
ORUFI05G18670
I
0.684
OS05G0429900
Oryza sativa
OS05G0429900
I
0.684
POPTR_0013s11360
Populus trichocarpa
POPTR_0013s11360
I
0.684
cassava16245.m1
Manihot esculenta
cassava16245.m1
I
0.684
cassava35464.valid.m1
Manihot esculenta
cassava35464.valid.m1
I
0.684
mgf003913m
Mimulus guttatus
mgf003913m
I
0.684
Bostr.25463s0384
Boechera stricta
Bostr.25463s0384
I
0.684
Carubv10001860m.g
Capsella rubella
Carubv10001860m.g
I
0.684
Carubv10012451m.g
Capsella rubella
Carubv10012451m.g
I
0.684
Ciclev10002068m.g
Citrus clementina
Ciclev10002068m.g
I
0.684
Lus10000411.g
Linum usitatissimum
Lus10000411.g
I
0.684
Lus10016948.g
Linum usitatissimum
Lus10016948.g
I
0.684
orange1.1g023056m.g
Citrus sinensis
orange1.1g023056m.g
I
0.684
SapurV1A.0277s0120
Salix purpurea
SapurV1A.0277s0120
I
0.684
SapurV1A.1985s0010
Salix purpurea
SapurV1A.1985s0010
I
0.684
Thhalv10028861m.g
Eutrema salsugineum
Thhalv10028861m.g
I
0.684
GSMUA_Achr10G16010_001
Musa acuminata
GSMUA_Achr10G16010_001
I
0.682
GSMUA_Achr2G20600_001
Musa acuminata
GSMUA_Achr2G20600_001
I
0.682
Eucgr.G01774
Eucalyptus grandis
Eucgr.G01774
I
0.682
BGIOSGA004902
Oryza indica
BGIOSGA004902
I
0.681
Bo7g117140
Brassica oleracea
Bo7g117140
I
0.681
Bra017685
Brassica rapa
Bra017685
I
0.681
F775_17298
Aegilops tauschii
F775_17298
I
0.681
GRMZM2G405094
Zea mays
GRMZM2G405094
I
0.681
MLOC_69570
Hordeum vulgare
MLOC_69570
I
0.681
OB01G47670
Oryza brachyantha
OB01G47670
I
0.681
ORGLA01G0328800
Oryza glaberrima
ORGLA01G0328800
I
0.681
OS01G0874300
Oryza sativa
OS01G0874300
I
0.681
Sb03g041360
Sorghum bicolor
Sb03g041360
I
0.681
TRAES3BF044400110CFD_g
Triticum aestivum
TRAES3BF044400110CFD_g
I
0.681
TRIUR3_22555
Triticum urartu
TRIUR3_22555
I
0.681
cassava46145.m1
Manihot esculenta
cassava46145.m1
I
0.681
Pavir.Ea03682
Panicum virgatum
Pavir.Ea03682
I
0.681
Pavir.J01502
Panicum virgatum
Pavir.J01502
I
0.681
Cagra.9781s0007
Capsella grandiflora
Cagra.9781s0007
I
0.680
VIT_13s0084g00530
Vitis vinifera
VIT_13s0084g00530
I
0.679
evm.TU.supercontig_28.71
Carica papaya
evm.TU.supercontig_28.71
I
0.679
Gorai.003G097900
Gossypium raimondii
Gorai.003G097900
I
0.679
GSMUA_Achr6G12930_001
Musa acuminata
GSMUA_Achr6G12930_001
I
0.678
MYB8
Arabidopsis thaliana
AT1G35515
I
0.676
GSMUA_Achr11G07180_001
Musa acuminata
GSMUA_Achr11G07180_001
I
0.676
TCM_014091
Theobroma cacao
TCM_014091
I
0.676
F775_31191
Aegilops tauschii
F775_31191
I
0.674
GRMZM2G077789
Zea mays
GRMZM2G077789
I
0.674
GRMZM2G431156
Zea mays
GRMZM2G431156
I
0.674
POPTR_0004s14510
Populus trichocarpa
POPTR_0004s14510
I
0.674
POPTR_0019s00750
Populus trichocarpa
POPTR_0019s00750
I
0.674
Traes_5AL_56F30392D
Triticum aestivum
Traes_5AL_56F30392D
I
0.674
Traes_5BL_AED68C680
Triticum aestivum
Traes_5BL_AED68C680
I
0.674
Traes_5DL_1868E2A6C
Triticum aestivum
Traes_5DL_1868E2A6C
I
0.674
TRIUR3_11890
Triticum urartu
TRIUR3_11890
I
0.674
Cagra.1383s0046
Capsella grandiflora
Cagra.1383s0046
I
0.674
Carubv10005426m.g
Capsella rubella
Carubv10005426m.g
I
0.674
Ciclev10028908m.g
Citrus clementina
Ciclev10028908m.g
I
0.674
Lus10014129.g
Linum usitatissimum
Lus10014129.g
I
0.674
MDP0000574942
Malus domestica
MDP0000574942
I
0.674
orange1.1g021503m.g
Citrus sinensis
orange1.1g021503m.g
I
0.674
SapurV1A.0591s0010
Salix purpurea
SapurV1A.0591s0010
I
0.674
SapurV1A.1127s0040
Salix purpurea
SapurV1A.1127s0040
I
0.674
TCM_012631
Theobroma cacao
TCM_012631
I
0.673
MYB32
Arabidopsis thaliana
AT4G34990
I
0.672
Bo1g006820
Brassica oleracea
Bo1g006820
I
0.672
Bra011576
Brassica rapa
Bra011576
I
0.672
AtMYB32
Arabidopsis lyrata
scaffold_700628.1
I
0.672
Bostr.7867s1358
Boechera stricta
Bostr.7867s1358
I
0.672
Cagra.2350s0045
Capsella grandiflora
Cagra.2350s0045
I
0.672
Carubv10005438m.g
Capsella rubella
Carubv10005438m.g
I
0.672
Thhalv10025926m.g
Eutrema salsugineum
Thhalv10025926m.g
I
0.672
GSMUA_Achr5G17010_001
Musa acuminata
GSMUA_Achr5G17010_001
I
0.671
TCM_000174
Theobroma cacao
TCM_000174
I
0.670
PK01174.1
Cannabis sativa
PK01174.1
I
0.670
Solyc12g049300.1
Solanum lycopersicum
Solyc12g049300.1
I
0.669
AMTR_s00139p00079430
Amborella trichopoda
AMTR_s00139p00079430
I
0.666
MYB3
Arabidopsis thaliana
AT1G22640
D
0.666
BGIOSGA034924
Oryza indica
BGIOSGA034924
I
0.666
Bo7g057770
Brassica oleracea
Bo7g057770
I
0.666
Bo8g071580
Brassica oleracea
Bo8g071580
I
0.666
Bra012337
Brassica rapa
Bra012337
I
0.666
ATMYB3
Arabidopsis lyrata
fgenesh2_kg.1__2457__AT1G22640.1
I
0.666
LPERR11G04310
Leersia perrieri
LPERR11G04310
I
0.666
MLOC_65957
Hordeum vulgare
MLOC_65957
I
0.666
OB11G14080
Oryza brachyantha
OB11G14080
I
0.666
OBART11G04950
Oryza barthii
OBART11G04950
I
0.666
OGLUM11G04790
Oryza glumaepatula
OGLUM11G04790
I
0.666
ONIVA11G05280
Oryza nivara
ONIVA11G05280
I
0.666
OPUNC11G04750
Oryza punctata
OPUNC11G04750
I
0.666
ORGLA11G0047500
Oryza glaberrima
ORGLA11G0047500
I
0.666
ORUFI11G04860
Oryza rufipogon
ORUFI11G04860
I
0.666
OS11G0180900
Oryza sativa
OS11G0180900
I
0.666
PGSC0003DMG400031317
Solanum tuberosum
PGSC0003DMG400031317
I
0.666
POPTR_0019s11090
Populus trichocarpa
POPTR_0019s11090
I
0.666
PRUPE_ppa008906mg
Prunus persica
PRUPE_ppa008906mg
I
0.666
Solyc06g065100.2
Solanum lycopersicum
Solyc06g065100.2
I
0.666
TCM_036404
Theobroma cacao
TCM_036404
I
0.666
Traes_4AL_CC5803BED
Triticum aestivum
Traes_4AL_CC5803BED
I
0.666
Traes_4BS_6253482BD
Triticum aestivum
Traes_4BS_6253482BD
I
0.666
Traes_4DS_7BFAC49C2
Triticum aestivum
Traes_4DS_7BFAC49C2
I
0.666
Cla012721
Citrullus lanatus
Cla012721
I
0.666
Pm004199
Prunus mume
Pm004199
I
0.666
28154.m000040
Ricinus communis
28154.m000040
I
0.666
Cucsa.061660
Cucumis sativus
Cucsa.061660
I
0.666
Aquca_073_00013
Aquilegia coerulea
Aquca_073_00013
I
0.666
Cagra.0114s0040
Capsella grandiflora
Cagra.0114s0040
I
0.666
Carubv10009761m.g
Capsella rubella
Carubv10009761m.g
I
0.666
Eucgr.F02583
Eucalyptus grandis
Eucgr.F02583
I
0.666
gene25685-v1.0-hybrid
Fragaria vesca
gene25685-v1.0-hybrid
I
0.666
Gorai.009G263200
Gossypium raimondii
Gorai.009G263200
I
0.666
Gorai.009G288900
Gossypium raimondii
Gorai.009G288900
I
0.666
Gorai.013G139200
Gossypium raimondii
Gorai.013G139200
I
0.666
MDP0000872821
Malus domestica
MDP0000872821
I
0.666
Pavir.J00442
Panicum virgatum
Pavir.J00442
I
0.666
Pavir.J00444
Panicum virgatum
Pavir.J00444
I
0.666
Thhalv10008456m.g
Eutrema salsugineum
Thhalv10008456m.g
I
0.666
PK21058.1
Cannabis sativa
PK21058.1
I
0.666
GRMZM2G160838
Zea mays
GRMZM2G160838
I
0.664
GSMUA_Achr3G22200_001
Musa acuminata
GSMUA_Achr3G22200_001
I
0.664
Bostr.12659s0116
Boechera stricta
Bostr.12659s0116
I
0.663
Eucgr.B00865
Eucalyptus grandis
Eucgr.B00865
I
0.663
Lus10001548.g
Linum usitatissimum
Lus10001548.g
I
0.663
Lus10009448.g
Linum usitatissimum
Lus10009448.g
I
0.663
OB12G14430
Oryza brachyantha
OB12G14430
I
0.662
OGLUM12G05340
Oryza glumaepatula
OGLUM12G05340
I
0.662
ONIVA12G04230
Oryza nivara
ONIVA12G04230
I
0.662
OPUNC12G04520
Oryza punctata
OPUNC12G04520
I
0.662
ORUFI12G05190
Oryza rufipogon
ORUFI12G05190
I
0.662
MYB39
Vitis vinifera
VIT_02s0012g01650
I
0.662
GSMUA_Achr10G04590_001
Musa acuminata
GSMUA_Achr10G04590_001
I
0.661
POPTR_0008s08870
Populus trichocarpa
POPTR_0008s08870
I
0.661
POPTR_0008s08920
Populus trichocarpa
POPTR_0008s08920
I
0.661
Pm006464
Prunus mume
Pm006464
I
0.661
SapurV1A.0801s0120
Salix purpurea
SapurV1A.0801s0120
I
0.661