CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10011259m.g
(
Capsella rubella
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Carubv10011259m.g
T286308_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TRP5
M01266_2.00
Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN
PBM
Lambert et al.(2019)
pTH9963
0.909
1.000
PK21687.1
M01282_2.00
Cannabis sativa
HWAAACCYH
DRGGTTTWD
PBM
Lambert et al.(2019)
pTH11299
0.849
0.957
TRP2
M07092_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP2_col_a
0.841
0.936
TRP2
M07093_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP2_colamp_a
0.841
0.936
TRP1
M07148_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP1_col
0.831
0.957
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10011259m
Myb
527
577
RRPFSVAEVEALVQAVERLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLV
Links
Other
Myb/SANT
family TFs
Other
Capsella rubella
TFs
197 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TRFL2
Arabidopsis lyrata
Al_scaffold_0001_698
I
0.909
TRP5
Arabidopsis thaliana
AT1G07540
D
0.909
Bo01118s020
Brassica oleracea
Bo01118s020
I
0.909
Bra030689
Brassica rapa
Bra030689
I
0.909
Bostr.25219s0206
Boechera stricta
Bostr.25219s0206
I
0.909
Cagra.1671s0374
Capsella grandiflora
Cagra.1671s0374
I
0.909
Thhalv10007062m.g
Eutrema salsugineum
Thhalv10007062m.g
I
0.909
MTR_2g097290
Medicago truncatula
MTR_2g097290
I
0.891
POPTR_0006s08680
Populus trichocarpa
POPTR_0006s08680
I
0.891
TRFL4
Arabidopsis lyrata
Al_scaffold_0005_2280
I
0.883
TRFL4
Arabidopsis thaliana
AT3G53790
I
0.883
Bo5g008270
Brassica oleracea
Bo5g008270
I
0.860
Bra015585
Brassica rapa
Bra015585
I
0.860
TRP3
Arabidopsis thaliana
AT3G12560
I
0.849
BGIOSGA012326
Oryza indica
BGIOSGA012326
I
0.849
Bo1g139150
Brassica oleracea
Bo1g139150
I
0.849
Bo5g133380
Brassica oleracea
Bo5g133380
I
0.849
Bra034751
Brassica rapa
Bra034751
I
0.849
Bra038729
Brassica rapa
Bra038729
I
0.849
BRADI1G66677
Brachypodium distachyon
BRADI1G66677
I
0.849
F775_17181
Aegilops tauschii
F775_17181
I
0.849
TRFL9
Arabidopsis lyrata
fgenesh2_kg.3__1313__AT3G12560.1
I
0.849
GLYMA11G34050
Glycine max
GLYMA11G34050
I
0.849
GLYMA13G41210
Glycine max
GLYMA13G41210
I
0.849
GLYMA18G04251
Glycine max
GLYMA18G04251
I
0.849
GRMZM2G063151
Zea mays
GRMZM2G063151
I
0.849
GRMZM2G110309
Zea mays
GRMZM2G110309
I
0.849
GSMUA_Achr7G15090_001
Musa acuminata
GSMUA_Achr7G15090_001
I
0.849
GSMUA_Achr9G03910_001
Musa acuminata
GSMUA_Achr9G03910_001
I
0.849
LPERR03G10840
Leersia perrieri
LPERR03G10840
I
0.849
MLOC_59817
Hordeum vulgare
MLOC_59817
I
0.849
MTR_3g067935
Medicago truncatula
MTR_3g067935
I
0.849
OB03G22340
Oryza brachyantha
OB03G22340
I
0.849
OBART03G12240
Oryza barthii
OBART03G12240
I
0.849
OGLUM03G12230
Oryza glumaepatula
OGLUM03G12230
I
0.849
OLONG_025333
Oryza longistaminata
OLONG_025333
I
0.849
OMERI03G11490
Oryza meridionalis
OMERI03G11490
I
0.849
ONIVA11G13450
Oryza nivara
ONIVA11G13450
I
0.849
OPUNC03G11810
Oryza punctata
OPUNC03G11810
I
0.849
ORGLA03G0118300
Oryza glaberrima
ORGLA03G0118300
I
0.849
ORUFI03G12870
Oryza rufipogon
ORUFI03G12870
I
0.849
OS03G0274300
Oryza sativa
OS03G0274300
I
0.849
PGSC0003DMG400030324
Solanum tuberosum
PGSC0003DMG400030324
I
0.849
POPTR_0001s24840
Populus trichocarpa
POPTR_0001s24840
I
0.849
POPTR_0009s03730
Populus trichocarpa
POPTR_0009s03730
I
0.849
PRUPE_ppa002374mg
Prunus persica
PRUPE_ppa002374mg
I
0.849
PRUPE_ppa002403mg
Prunus persica
PRUPE_ppa002403mg
I
0.849
PRUPE_ppa002522mg
Prunus persica
PRUPE_ppa002522mg
I
0.849
Sb01g039650
Sorghum bicolor
Sb01g039650
I
0.849
Si016548m.g
Setaria italica
Si016548m.g
I
0.849
Si034524m.g
Setaria italica
Si034524m.g
I
0.849
Solyc06g076270.2
Solanum lycopersicum
Solyc06g076270.2
I
0.849
TCM_041816
Theobroma cacao
TCM_041816
I
0.849
TCM_042704
Theobroma cacao
TCM_042704
I
0.849
Traes_4AS_FA7E65184
Triticum aestivum
Traes_4AS_FA7E65184
I
0.849
Traes_4BL_AB2636FB0
Triticum aestivum
Traes_4BL_AB2636FB0
I
0.849
Traes_4DL_3849A9A5F
Triticum aestivum
Traes_4DL_3849A9A5F
I
0.849
TRIUR3_18647
Triticum urartu
TRIUR3_18647
I
0.849
VIT_06s0004g04940
Vitis vinifera
VIT_06s0004g04940
I
0.849
VIT_13s0019g01670
Vitis vinifera
VIT_13s0019g01670
I
0.849
Ca_02624
Cicer arietinum
Ca_02624
I
0.849
Ca_13309
Cicer arietinum
Ca_13309
I
0.849
Cla008361
Citrullus lanatus
Cla008361
I
0.849
Pm000720
Prunus mume
Pm000720
I
0.849
Pm002686
Prunus mume
Pm002686
I
0.849
28880.m000016
Ricinus communis
28880.m000016
I
0.849
cassava19451.valid.m1
Manihot esculenta
cassava19451.valid.m1
I
0.849
cassava19452.valid.m1
Manihot esculenta
cassava19452.valid.m1
I
0.849
cassava19453.valid.m1
Manihot esculenta
cassava19453.valid.m1
I
0.849
cassava30955.valid.m1
Manihot esculenta
cassava30955.valid.m1
I
0.849
Cucsa.117790
Cucumis sativus
Cucsa.117790
I
0.849
e_gw1.132.51.1
Physcomitrella patens
e_gw1.132.51.1
I
0.849
mgf005791m
Mimulus guttatus
mgf005791m
I
0.849
Aquca_009_00956
Aquilegia coerulea
Aquca_009_00956
I
0.849
Bostr.26833s0301
Boechera stricta
Bostr.26833s0301
I
0.849
Bostr.3640s0028
Boechera stricta
Bostr.3640s0028
I
0.849
Cagra.1317s0071
Capsella grandiflora
Cagra.1317s0071
I
0.849
Cagra.5641s0019
Capsella grandiflora
Cagra.5641s0019
I
0.849
Carubv10013179m.g
Capsella rubella
Carubv10013179m.g
I
0.849
Carubv10026172m.g
Capsella rubella
Carubv10026172m.g
I
0.849
Ciclev10027927m.g
Citrus clementina
Ciclev10027927m.g
I
0.849
Eucgr.B02351
Eucalyptus grandis
Eucgr.B02351
I
0.849
Eucgr.J01245
Eucalyptus grandis
Eucgr.J01245
I
0.849
evm.TU.supercontig_1.421
Carica papaya
evm.TU.supercontig_1.421
I
0.849
evm.TU.supercontig_81.127
Carica papaya
evm.TU.supercontig_81.127
I
0.849
Gorai.003G130700
Gossypium raimondii
Gorai.003G130700
I
0.849
Gorai.011G266100
Gossypium raimondii
Gorai.011G266100
I
0.849
Gorai.013G021300
Gossypium raimondii
Gorai.013G021300
I
0.849
Lus10010844.g
Linum usitatissimum
Lus10010844.g
I
0.849
Lus10024385.g
Linum usitatissimum
Lus10024385.g
I
0.849
MDP0000137531
Malus domestica
MDP0000137531
I
0.849
MDP0000209974
Malus domestica
MDP0000209974
I
0.849
orange1.1g042386m.g
Citrus sinensis
orange1.1g042386m.g
I
0.849
Pavir.Ia03771
Panicum virgatum
Pavir.Ia03771
I
0.849
Pavir.J18132
Panicum virgatum
Pavir.J18132
I
0.849
SapurV1A.0041s0150
Salix purpurea
SapurV1A.0041s0150
I
0.849
Thhalv10013086m.g
Eutrema salsugineum
Thhalv10013086m.g
I
0.849
Thhalv10020283m.g
Eutrema salsugineum
Thhalv10020283m.g
I
0.849
PK21687.1
Cannabis sativa
PK21687.1
D
0.849
TRP2
Arabidopsis thaliana
AT3G46590
D
0.841
TRFL1
Arabidopsis lyrata
fgenesh2_kg.5__1021__AT3G46590.3
I
0.841
GLYMA07G15940
Glycine max
GLYMA07G15940
I
0.841
GLYMA18G39911
Glycine max
GLYMA18G39911
I
0.841
MTR_7g061840
Medicago truncatula
MTR_7g061840
I
0.841
PGSC0003DMG400002138
Solanum tuberosum
PGSC0003DMG400002138
I
0.841
PGSC0003DMG400023432
Solanum tuberosum
PGSC0003DMG400023432
I
0.841
Solyc05g054410.2
Solanum lycopersicum
Solyc05g054410.2
I
0.841
Solyc06g005590.2
Solanum lycopersicum
Solyc06g005590.2
I
0.841
Ca_21136
Cicer arietinum
Ca_21136
I
0.841
Cla004068
Citrullus lanatus
Cla004068
I
0.841
Cucsa.165230
Cucumis sativus
Cucsa.165230
I
0.841
mgf007893m
Mimulus guttatus
mgf007893m
I
0.841
Cagra.0448s0008
Capsella grandiflora
Cagra.0448s0008
I
0.841
Carubv10016934m.g
Capsella rubella
Carubv10016934m.g
I
0.841
gene02230-v1.0-hybrid
Fragaria vesca
gene02230-v1.0-hybrid
I
0.841
Thhalv10002472m.g
Eutrema salsugineum
Thhalv10002472m.g
I
0.841
TRP4
Arabidopsis thaliana
AT5G13820
I
0.839
Bo2g011570
Brassica oleracea
Bo2g011570
I
0.839
Bo3g009370
Brassica oleracea
Bo3g009370
I
0.839
Bo9g166400
Brassica oleracea
Bo9g166400
I
0.839
Bra006218
Brassica rapa
Bra006218
I
0.839
Bra008800
Brassica rapa
Bra008800
I
0.839
Bra023437
Brassica rapa
Bra023437
I
0.839
TBP1
Arabidopsis lyrata
fgenesh2_kg.6__1339__AT5G13820.1
I
0.839
MTR_5g080010
Medicago truncatula
MTR_5g080010
I
0.839
POPTR_0008s05740
Populus trichocarpa
POPTR_0008s05740
I
0.839
Ca_16107
Cicer arietinum
Ca_16107
I
0.839
cassava31336.valid.m1
Manihot esculenta
cassava31336.valid.m1
I
0.839
Bostr.2902s0116
Boechera stricta
Bostr.2902s0116
I
0.839
Ciclev10030878m.g
Citrus clementina
Ciclev10030878m.g
I
0.839
Lus10000947.g
Linum usitatissimum
Lus10000947.g
I
0.839
Lus10002704.g
Linum usitatissimum
Lus10002704.g
I
0.839
Lus10040285.g
Linum usitatissimum
Lus10040285.g
I
0.839
MDP0000119184
Malus domestica
MDP0000119184
I
0.839
SapurV1A.0451s0070
Salix purpurea
SapurV1A.0451s0070
I
0.839
Thhalv10012893m.g
Eutrema salsugineum
Thhalv10012893m.g
I
0.839
LjSGA_019393.1
Lotus japonicus
LjSGA_019393.1
I
0.839
AMTR_s00009p00107000
Amborella trichopoda
AMTR_s00009p00107000
I
0.831
TRP1
Arabidopsis thaliana
AT5G59430
D
0.831
ATTRP1
Arabidopsis lyrata
fgenesh2_kg.8__1886__AT5G59430.4
I
0.831
GLYMA11G14760
Glycine max
GLYMA11G14760
I
0.831
GLYMA15G04200
Glycine max
GLYMA15G04200
I
0.831
GSMUA_Achr10G22620_001
Musa acuminata
GSMUA_Achr10G22620_001
I
0.831
GSMUA_Achr8G20810_001
Musa acuminata
GSMUA_Achr8G20810_001
I
0.831
TCM_021921
Theobroma cacao
TCM_021921
I
0.831
TRFL4
Vitis vinifera
VIT_08s0007g00500
I
0.831
Pm018821
Prunus mume
Pm018821
I
0.831
gene26492-v1.0-hybrid
Fragaria vesca
gene26492-v1.0-hybrid
I
0.831
Gorai.006G172000
Gossypium raimondii
Gorai.006G172000
I
0.831
SapurV1A.0040s0420
Salix purpurea
SapurV1A.0040s0420
I
0.831
AMTR_s00012p00239180
Amborella trichopoda
AMTR_s00012p00239180
I
0.823
Bo9g139390
Brassica oleracea
Bo9g139390
I
0.823
Bra002566
Brassica rapa
Bra002566
I
0.823
GLYMA12G06680
Glycine max
GLYMA12G06680
I
0.823
GRMZM2G133016
Zea mays
GRMZM2G133016
I
0.823
Sb06g019970
Sorghum bicolor
Sb06g019970
I
0.823
Si000591m.g
Setaria italica
Si000591m.g
I
0.823
gw1.98.100.1
Physcomitrella patens
gw1.98.100.1
I
0.823
Aquca_003_00096
Aquilegia coerulea
Aquca_003_00096
I
0.823
Bostr.18473s0300
Boechera stricta
Bostr.18473s0300
I
0.823
gene18432-v1.0-hybrid
Fragaria vesca
gene18432-v1.0-hybrid
I
0.823
Pavir.Gb01315
Panicum virgatum
Pavir.Gb01315
I
0.823
Thhalv10011058m.g
Eutrema salsugineum
Thhalv10011058m.g
I
0.823
POPTR_0010s20990
Populus trichocarpa
POPTR_0010s20990
I
0.821
SapurV1A.0281s0030
Salix purpurea
SapurV1A.0281s0030
I
0.821
Solyc04g011650.2
Solanum lycopersicum
Solyc04g011650.2
I
0.820
Cagra.5588s0009
Capsella grandiflora
Cagra.5588s0009
I
0.820
Carubv10000426m.g
Capsella rubella
Carubv10000426m.g
I
0.820
Si009551m.g
Setaria italica
Si009551m.g
I
0.805
PGSC0003DMG400006353
Solanum tuberosum
PGSC0003DMG400006353
I
0.802
Pavir.Ea04142
Panicum virgatum
Pavir.Ea04142
I
0.800
Gorai.009G098300
Gossypium raimondii
Gorai.009G098300
I
0.794
BGIOSGA005358
Oryza indica
BGIOSGA005358
I
0.792
LPERR02G30830
Leersia perrieri
LPERR02G30830
I
0.792
OB02G44060
Oryza brachyantha
OB02G44060
I
0.792
OBART02G37370
Oryza barthii
OBART02G37370
I
0.792
OGLUM02G38510
Oryza glumaepatula
OGLUM02G38510
I
0.792
OLONG_013725
Oryza longistaminata
OLONG_013725
I
0.792
OMERI01G33350
Oryza meridionalis
OMERI01G33350
I
0.792
ONIVA02G40130
Oryza nivara
ONIVA02G40130
I
0.792
OPUNC02G34540
Oryza punctata
OPUNC02G34540
I
0.792
ORGLA02G0325900
Oryza glaberrima
ORGLA02G0325900
I
0.792
ORUFI02G38880
Oryza rufipogon
ORUFI02G38880
I
0.792
BRADI2G62170
Brachypodium distachyon
BRADI2G62170
I
0.789
F775_10373
Aegilops tauschii
F775_10373
I
0.789
MLOC_57410
Hordeum vulgare
MLOC_57410
I
0.789
TRAES3BF045500220CFD_g
Triticum aestivum
TRAES3BF045500220CFD_g
I
0.789
SELMODRAFT_121021
Selaginella moellendorffii
SELMODRAFT_121021
I
0.782
SELMODRAFT_123062
Selaginella moellendorffii
SELMODRAFT_123062
I
0.782
Pavir.J14051
Panicum virgatum
Pavir.J14051
I
0.763
Cla013524
Citrullus lanatus
Cla013524
I
0.760
Cucsa.138770
Cucumis sativus
Cucsa.138770
I
0.760
Gorai.010G200900
Gossypium raimondii
Gorai.010G200900
I
0.754
Carubv10018629m.g
Capsella rubella
Carubv10018629m.g
I
0.734
Bo4g120560
Brassica oleracea
Bo4g120560
I
0.711
SELMODRAFT_131544
Selaginella moellendorffii
SELMODRAFT_131544
I
0.708
LjSGA_017694.1
Lotus japonicus
LjSGA_017694.1
I
0.705