CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10016941m.g
(
Capsella rubella
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Carubv10016941m.g
T286361_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10016941m
Myb
307
355
KGGWTEELELALQGAYLTVKPSPNFWKKVAKMVPGKSAQECFDKVNSAL
Links
Other
Myb/SANT
family TFs
Other
Capsella rubella
TFs
16 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00044p00144500
Amborella trichopoda
AMTR_s00044p00144500
N
0.753
fgenesh2_kg.5__1710__AT3G53440.2
Arabidopsis lyrata
fgenesh2_kg.5__1710__AT3G53440.2
N
0.905
AT3G53440
Arabidopsis thaliana
AT3G53440
N
0.905
Bostr.11793s0050
Boechera stricta
Bostr.11793s0050
N
0.905
Bo8g082820
Brassica oleracea
Bo8g082820
N
0.786
Bo8g082840
Brassica oleracea
Bo8g082840
N
0.786
PK06741.1
Cannabis sativa
PK06741.1
N
0.744
Cagra.0612s0070
Capsella grandiflora
Cagra.0612s0070
N
0.909
evm.TU.supercontig_129.20
Carica papaya
evm.TU.supercontig_129.20
N
0.724
Thhalv10010289m.g
Eutrema salsugineum
Thhalv10010289m.g
N
0.826
Lus10002159.g
Linum usitatissimum
Lus10002159.g
N
0.675
mgf021292m
Mimulus guttatus
mgf021292m
N
0.698
POPTR_0018s04230
Populus trichocarpa
POPTR_0018s04230
N
0.698
Pm002284
Prunus mume
Pm002284
N
0.709
PRUPE_ppa003947mg
Prunus persica
PRUPE_ppa003947mg
N
0.709
VIT_17s0000g03540
Vitis vinifera
VIT_17s0000g03540
N
0.665