Carubv10018791m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10018791m.g T286382_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB23
M07133_2.00 		Arabidopsis thaliana
HCAACWAHHHH
DDDDTWGTTGD		 Dap-seq
OMalley et al.(2016)
MYB23_col_a 		0.755 0.903
WER
M11047_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WEREWOLF_Q2_01 		0.742 0.903
WER
M11048_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WEREWOLF_Q2 		0.742 0.903
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10018791m Myb 16 63
Carubv10018791m Myb 69 114

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

61 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.4961s0006 Capsella grandiflora Cagra.4961s0006 I 0.909
Bostr.0556s0467 Boechera stricta Bostr.0556s0467 I 0.884
GL1 Arabidopsis thaliana AT3G27920 I 0.863
GL1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5000559 I 0.863
Bra025311 Brassica rapa Bra025311 I 0.833
Bo7g090950 Brassica oleracea Bo7g090950 I 0.812
Thhalv10005428m.g Eutrema salsugineum Thhalv10005428m.g I 0.794
TCM_016886 Theobroma cacao TCM_016886 I 0.776
Thhalv10028340m.g Eutrema salsugineum Thhalv10028340m.g I 0.771
Eucgr.I01791 Eucalyptus grandis Eucgr.I01791 I 0.762
MYB23 Arabidopsis thaliana AT5G40330 D 0.755
Bra025589 Brassica rapa Bra025589 I 0.755
Bostr.7200s0005 Boechera stricta Bostr.7200s0005 I 0.755
Cagra.3160s0003 Capsella grandiflora Cagra.3160s0003 I 0.755
Carubv10005698m.g Capsella rubella Carubv10005698m.g I 0.755
WER Arabidopsis thaliana AT5G14750 D 0.742
Bo2g012170 Brassica oleracea Bo2g012170 I 0.742
WER Arabidopsis lyrata fgenesh2_kg.6__1454__AT5G14750.1 I 0.742
Bostr.2902s0211 Boechera stricta Bostr.2902s0211 I 0.742
Cagra.3166s0078 Capsella grandiflora Cagra.3166s0078 I 0.742
Carubv10001990m.g Capsella rubella Carubv10001990m.g I 0.742
Thhalv10014715m.g Eutrema salsugineum Thhalv10014715m.g I 0.742
VIT_14s0066g01220 Vitis vinifera VIT_14s0066g01220 I 0.735
Gorai.012G061800 Gossypium raimondii Gorai.012G061800 I 0.733
Pm024725 Prunus mume Pm024725 I 0.726
Bo9g165670 Brassica oleracea Bo9g165670 I 0.725
Bra008740 Brassica rapa Bra008740 I 0.725
orange1.1g047269m.g Citrus sinensis orange1.1g047269m.g I 0.724
cassava26193.m1 Manihot esculenta cassava26193.m1 I 0.719
Bostr.1460s0063 Boechera stricta Bostr.1460s0063 I 0.719
TCM_012057 Theobroma cacao TCM_012057 I 0.716
MDP0000578193 Malus domestica MDP0000578193 I 0.716
PRUPE_ppa010908mg Prunus persica PRUPE_ppa010908mg I 0.711
Ciclev10017556m.g Citrus clementina Ciclev10017556m.g I 0.709
SapurV1A.1178s0050 Salix purpurea SapurV1A.1178s0050 I 0.708
Aquca_025_00333 Aquilegia coerulea Aquca_025_00333 I 0.707
Bra039065 Brassica rapa Bra039065 I 0.705
Aquca_002_00170 Aquilegia coerulea Aquca_002_00170 I 0.705
Eucgr.J02212 Eucalyptus grandis Eucgr.J02212 I 0.703
Bra023486 Brassica rapa Bra023486 I 0.701
VIT_17s0000g08480 Vitis vinifera VIT_17s0000g08480 I 0.699
MDP0000650225 Malus domestica MDP0000650225 I 0.699
POPTR_0012s08190 Populus trichocarpa POPTR_0012s08190 I 0.686
Eucgr.B00373 Eucalyptus grandis Eucgr.B00373 I 0.683
VIT_01s0127g00730 Vitis vinifera VIT_01s0127g00730 I 0.682
Gorai.007G001800 Gossypium raimondii Gorai.007G001800 I 0.682
SapurV1A.1404s0020 Salix purpurea SapurV1A.1404s0020 I 0.681
cassava27350.m1 Manihot esculenta cassava27350.m1 I 0.680
mgf023205m Mimulus guttatus mgf023205m I 0.678
Ciclev10032713m.g Citrus clementina Ciclev10032713m.g I 0.676
MDP0000537324 Malus domestica MDP0000537324 I 0.676
evm.TU.supercontig_124.57 Carica papaya evm.TU.supercontig_124.57 I 0.674
POPTR_0015s08680 Populus trichocarpa POPTR_0015s08680 I 0.669
PRUPE_ppa014884mg Prunus persica PRUPE_ppa014884mg I 0.668
Pm006678 Prunus mume Pm006678 I 0.668
MDP0000164048 Malus domestica MDP0000164048 I 0.668
TCM_010360 Theobroma cacao TCM_010360 I 0.665
MDP0000199965 Malus domestica MDP0000199965 I 0.664
gene31098-v1.0-hybrid Fragaria vesca gene31098-v1.0-hybrid I 0.663
evm.TU.supercontig_46.32 Carica papaya evm.TU.supercontig_46.32 I 0.662
LjT16O05.150.nd Lotus japonicus LjT16O05.150.nd I 0.662