CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10019483m.g
(
Capsella rubella
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Carubv10019483m.g
T286391_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10019483m
Myb
10
57
KGPWKAEEDEVLINHVKRYGPRDWSSIRSKGLLQRTGKSCRLRWVNKL
Carubv10019483m
Myb
64
108
GCKFSADEERVVIELQSEFGNKWARIATYLPGRTDNDVKNFWSSR
Links
Other
Myb/SANT
family TFs
Other
Capsella rubella
TFs
87 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.3527s0008
Capsella grandiflora
Cagra.3527s0008
N
0.909
DUO1
Arabidopsis thaliana
AT3G60460
N
0.884
Bra003413
Brassica rapa
Bra003413
N
0.884
DUO1
Arabidopsis lyrata
fgenesh2_kg.5__2511__AT3G60460.1
N
0.884
Bostr.13158s0042
Boechera stricta
Bostr.13158s0042
N
0.884
POPTR_0002s14180
Populus trichocarpa
POPTR_0002s14180
N
0.879
SapurV1A.0033s0200
Salix purpurea
SapurV1A.0033s0200
N
0.876
Bo6g077030
Brassica oleracea
Bo6g077030
N
0.875
Thhalv10006475m.g
Eutrema salsugineum
Thhalv10006475m.g
N
0.869
SapurV1A.0490s0170
Salix purpurea
SapurV1A.0490s0170
N
0.856
LjT36B17.50.nd
Lotus japonicus
LjT36B17.50.nd
N
0.855
POPTR_0014s05370
Populus trichocarpa
POPTR_0014s05370
N
0.849
POPTR_0014s05420
Populus trichocarpa
POPTR_0014s05420
N
0.849
TCM_005653
Theobroma cacao
TCM_005653
N
0.849
evm.TU.supercontig_37.96
Carica papaya
evm.TU.supercontig_37.96
N
0.849
Cla006831
Citrullus lanatus
Cla006831
N
0.839
Bo8g095200
Brassica oleracea
Bo8g095200
N
0.835
Bra007536
Brassica rapa
Bra007536
N
0.835
30174.m008784
Ricinus communis
30174.m008784
N
0.832
Pm017596
Prunus mume
Pm017596
N
0.829
MDP0000237596
Malus domestica
MDP0000237596
N
0.829
MDP0000319634
Malus domestica
MDP0000319634
N
0.829
Cucsa.121070
Cucumis sativus
Cucsa.121070
N
0.825
Eucgr.E01581
Eucalyptus grandis
Eucgr.E01581
N
0.820
cassava19913.m1
Manihot esculenta
cassava19913.m1
N
0.817
Bostr.13158s0046
Boechera stricta
Bostr.13158s0046
N
0.816
Si012032m.g
Setaria italica
Si012032m.g
N
0.815
Pavir.Gb01130
Panicum virgatum
Pavir.Gb01130
N
0.815
Pavir.Fb01900
Panicum virgatum
Pavir.Fb01900
N
0.810
Pavir.J30013
Panicum virgatum
Pavir.J30013
N
0.808
Pavir.J35399
Panicum virgatum
Pavir.J35399
N
0.808
DUO1
Vitis vinifera
VIT_15s0021g02040
N
0.807
mgf019330m
Mimulus guttatus
mgf019330m
N
0.807
Ciclev10021345m.g
Citrus clementina
Ciclev10021345m.g
N
0.807
orange1.1g038795m.g
Citrus sinensis
orange1.1g038795m.g
N
0.807
PRUPE_ppa020326mg
Prunus persica
PRUPE_ppa020326mg
N
0.804
Traes_2AL_0A21FB42C
Triticum aestivum
Traes_2AL_0A21FB42C
N
0.804
Traes_2BL_855A1170C
Triticum aestivum
Traes_2BL_855A1170C
N
0.804
GLYMA03G26830
Glycine max
GLYMA03G26830
N
0.802
Gorai.004G165400
Gossypium raimondii
Gorai.004G165400
N
0.801
BGIOSGA016880
Oryza indica
BGIOSGA016880
N
0.800
GRMZM2G105137
Zea mays
GRMZM2G105137
N
0.800
OB04G27810
Oryza brachyantha
OB04G27810
N
0.800
OBART04G20790
Oryza barthii
OBART04G20790
N
0.800
OGLUM04G20730
Oryza glumaepatula
OGLUM04G20730
N
0.800
OMERI04G17240
Oryza meridionalis
OMERI04G17240
N
0.800
ONIVA04G19030
Oryza nivara
ONIVA04G19030
N
0.800
OPUNC04G18480
Oryza punctata
OPUNC04G18480
N
0.800
ORGLA04G0178400
Oryza glaberrima
ORGLA04G0178400
N
0.800
ORUFI04G22380
Oryza rufipogon
ORUFI04G22380
N
0.800
gene04800-v1.0-hybrid
Fragaria vesca
gene04800-v1.0-hybrid
N
0.800
PRUPE_ppa016603mg
Prunus persica
PRUPE_ppa016603mg
N
0.796
Pm019530
Prunus mume
Pm019530
N
0.796
Pm031387
Prunus mume
Pm031387
N
0.796
Solyc01g090530.1
Solanum lycopersicum
Solyc01g090530.1
N
0.794
GLYMA07G14480
Glycine max
GLYMA07G14480
N
0.793
Ca_18954
Cicer arietinum
Ca_18954
N
0.791
PGSC0003DMG400025720
Solanum tuberosum
PGSC0003DMG400025720
N
0.790
cassava17368.m1
Manihot esculenta
cassava17368.m1
N
0.784
MTR_8g006470
Medicago truncatula
MTR_8g006470
N
0.783
gene12261-v1.0-hybrid
Fragaria vesca
gene12261-v1.0-hybrid
N
0.783
Pavir.Fa00479
Panicum virgatum
Pavir.Fa00479
N
0.779
Traes_2DL_912473A86
Triticum aestivum
Traes_2DL_912473A86
N
0.778
Aquca_081_00025
Aquilegia coerulea
Aquca_081_00025
N
0.778
BRADI5G17600
Brachypodium distachyon
BRADI5G17600
N
0.776
MTR_4g029540
Medicago truncatula
MTR_4g029540
N
0.776
Si015815m.g
Setaria italica
Si015815m.g
N
0.776
Sb06g024510
Sorghum bicolor
Sb06g024510
N
0.772
GRMZM2G311059
Zea mays
GRMZM2G311059
N
0.762
Aquca_002_00029
Aquilegia coerulea
Aquca_002_00029
N
0.762
Sb07g027160
Sorghum bicolor
Sb07g027160
N
0.760
Solyc10g019260.1
Solanum lycopersicum
Solyc10g019260.1
N
0.755
GRMZM2G046443
Zea mays
GRMZM2G046443
N
0.743
TCM_014872
Theobroma cacao
TCM_014872
N
0.742
Cla010897
Citrullus lanatus
Cla010897
N
0.733
Lus10009780.g
Linum usitatissimum
Lus10009780.g
N
0.731
Ca_19557
Cicer arietinum
Ca_19557
N
0.727
AMTR_s00111p00072510
Amborella trichopoda
AMTR_s00111p00072510
N
0.723
GSMUA_Achr1G01660_001
Musa acuminata
GSMUA_Achr1G01660_001
N
0.722
GLYMA09G00371
Glycine max
GLYMA09G00371
N
0.721
GLYMA12G37026
Glycine max
GLYMA12G37026
N
0.718
Gorai.003G112700
Gossypium raimondii
Gorai.003G112700
N
0.713
Cucsa.094180
Cucumis sativus
Cucsa.094180
N
0.709
SELMODRAFT_116971
Selaginella moellendorffii
SELMODRAFT_116971
N
0.677
SELMODRAFT_118852
Selaginella moellendorffii
SELMODRAFT_118852
N
0.677
mgf004314m
Mimulus guttatus
mgf004314m
N
0.675
LPERR04G16870
Leersia perrieri
LPERR04G16870
N
0.674