Carubv10020723m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10020723m.g T286403_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB51
M07010_2.00 		Arabidopsis thaliana
NHNHHNHNNNYYYACCWACYW
WRGTWGGTRRRNNNDNDDNDN		 Dap-seq
OMalley et al.(2016)
MYB51_col_a 		0.751 0.806
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10020723m Myb 14 61
Carubv10020723m Myb 67 112

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.3288s0058 Boechera stricta Bostr.3288s0058 I 0.817
ATMYB122 Arabidopsis lyrata fgenesh2_kg.2__1680__AT1G74080.1 I 0.808
MYB122 Arabidopsis thaliana AT1G74080 I 0.803
Bo6g118350 Brassica oleracea Bo6g118350 I 0.793
Bra015939 Brassica rapa Bra015939 I 0.793
Bo2g080900 Brassica oleracea Bo2g080900 I 0.761
Bo8g067910 Brassica oleracea Bo8g067910 I 0.757
Thhalv10018705m.g Eutrema salsugineum Thhalv10018705m.g I 0.756
Bo8g104300 Brassica oleracea Bo8g104300 I 0.755
Bra031035 Brassica rapa Bra031035 I 0.755
Thhalv10008152m.g Eutrema salsugineum Thhalv10008152m.g I 0.754
MYB51 Arabidopsis thaliana AT1G18570 D 0.751
Bra008131 Brassica rapa Bra008131 I 0.751
MYB51 Arabidopsis lyrata fgenesh2_kg.1__2031__AT1G18570.1 I 0.751
Bostr.7128s0464 Boechera stricta Bostr.7128s0464 I 0.751
Cagra.4153s0023 Capsella grandiflora Cagra.4153s0023 I 0.751
Carubv10009563m.g Capsella rubella Carubv10009563m.g I 0.751
Bra016553 Brassica rapa Bra016553 I 0.727
Bo5g025570 Brassica oleracea Bo5g025570 I 0.724
Bra025666 Brassica rapa Bra025666 I 0.724
Bo9g014380 Brassica oleracea Bo9g014380 I 0.694
PK14811.1 Cannabis sativa PK14811.1 I 0.688
Bra035954 Brassica rapa Bra035954 I 0.685
PK27708.1 Cannabis sativa PK27708.1 I 0.685
evm.TU.supercontig_3.239 Carica papaya evm.TU.supercontig_3.239 I 0.684
Bo3g004500 Brassica oleracea Bo3g004500 I 0.682
cassava44039.valid.m1 Manihot esculenta cassava44039.valid.m1 I 0.678
GSMUA_Achr11G07180_001 Musa acuminata GSMUA_Achr11G07180_001 I 0.675
MYB29 Arabidopsis thaliana AT5G07690 I 0.674
MYB29 Arabidopsis lyrata fgenesh2_kg.6__738__AT5G07690.1 I 0.674
Bostr.13129s0197 Boechera stricta Bostr.13129s0197 I 0.674
Cagra.2925s0017 Capsella grandiflora Cagra.2925s0017 I 0.674
Carubv10001328m.g Capsella rubella Carubv10001328m.g I 0.674
Thhalv10013952m.g Eutrema salsugineum Thhalv10013952m.g I 0.674
Bra005949 Brassica rapa Bra005949 I 0.671
cassava46146.m1 Manihot esculenta cassava46146.m1 I 0.670
cassava47112.m1 Manihot esculenta cassava47112.m1 I 0.670
Lus10019085.g Linum usitatissimum Lus10019085.g I 0.667
MYB34 Arabidopsis thaliana AT5G60890 I 0.664
Bo9g175680 Brassica oleracea Bo9g175680 I 0.664
Bra013000 Brassica rapa Bra013000 I 0.664
ATMYB34 Arabidopsis lyrata fgenesh2_kg.8__2056__AT5G60890.1 I 0.664
TCM_014091 Theobroma cacao TCM_014091 I 0.664
Bostr.26833s0149 Boechera stricta Bostr.26833s0149 I 0.664
Carubv10027524m.g Capsella rubella Carubv10027524m.g I 0.664
Thhalv10004638m.g Eutrema salsugineum Thhalv10004638m.g I 0.664
MYB28 Arabidopsis thaliana AT5G61420 I 0.663
Bo2g161590 Brassica oleracea Bo2g161590 I 0.663
Bo9g014610 Brassica oleracea Bo9g014610 I 0.663
Bra035929 Brassica rapa Bra035929 I 0.663
MYB28 Arabidopsis lyrata scaffold_802785.1 I 0.663
Bostr.26833s0098 Boechera stricta Bostr.26833s0098 I 0.663
Cagra.0542s0036 Capsella grandiflora Cagra.0542s0036 I 0.663
Carubv10027861m.g Capsella rubella Carubv10027861m.g I 0.663
Thhalv10004407m.g Eutrema salsugineum Thhalv10004407m.g I 0.663
Bo7g098110 Brassica oleracea Bo7g098110 I 0.661