CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10025403m.g
(
Capsella rubella
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Carubv10025403m.g
T286440_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AtMYB81
M07049_2.00
Arabidopsis thaliana
VTAACNGHWWH
DWWDCNGTTAB
Dap-seq
OMalley et al.(2016)
MYB81_col_a
0.883
0.957
AtMYB81
M07050_2.00
Arabidopsis thaliana
DHHNYAACBGHWWH
DWWDCVGTTRNDDH
Dap-seq
OMalley et al.(2016)
MYB81_colamp_a
0.883
0.957
myb.Ph3
M02704_2.00
Petunia x hybrida
WAACNGTYW
WRACNGTTW
SELEX
Mathelier et al.(2014)
MA0054.1
0.681
0.785
myb.Ph3
M11070_2.00
Petunia x hybrida
RTAACSGTTTYHW
WDRAAACSGTTAY
Transfac
Matys et al.(2006)
P$MYBPH3_01
0.681
0.785
myb.Ph3
M11071_2.00
Petunia x hybrida
STAACTAACTHHH
DDDAGTTAGTTAS
Transfac
Matys et al.(2006)
P$MYBPH3_02
0.681
0.785
Q9FR42_TOBAC
M11076_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBAS1_01
0.673
0.731
Gam1
M02703_2.00
Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN
SELEX
Mathelier et al.(2014)
MA0034.1
0.670
0.742
Gam1
M11061_2.00
Hordeum vulgare
YAACSRHM
KDYSGTTR
Transfac
Matys et al.(2006)
P$GAMYB_01
0.670
0.742
GAM1_ORYSI
M11055_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GAMYB_Q2
0.670
0.742
MYB33
M02306_2.00
Arabidopsis thaliana
HAACNRHHNN
NNDDYNGTTD
PBM
Weirauch et al.(2014)
pTH8204
0.661
0.742
MYB33
M07120_2.00
Arabidopsis thaliana
NTAACYGWHWH
DWDWCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB33_col_a
0.661
0.742
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10025403m
Myb
22
69
KGPWTQAEDNLLIAYVDKHGDGNWNAVQKHSGLSRCGKSCRLRWVNHL
Carubv10025403m
Myb
75
120
KGAFTEKEEQRVIELHALLGNKWARMAGELPGRTDNEIKNFWNTRL
Links
Other
Myb/SANT
family TFs
Other
Capsella rubella
TFs
127 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cagra.9104s0001
Capsella grandiflora
Cagra.9104s0001
I
0.909
AtMYB81
Arabidopsis lyrata
Al_scaffold_0004_975
I
0.896
AtMYB81
Arabidopsis thaliana
AT2G26960
D
0.883
Bostr.6864s0293
Boechera stricta
Bostr.6864s0293
I
0.874
Thhalv10002011m.g
Eutrema salsugineum
Thhalv10002011m.g
I
0.849
Bo3g041750
Brassica oleracea
Bo3g041750
I
0.806
Bra000531
Brassica rapa
Bra000531
I
0.806
Bostr.29505s0026
Boechera stricta
Bostr.29505s0026
I
0.800
Bo4g076940
Brassica oleracea
Bo4g076940
I
0.760
Bra012038
Brassica rapa
Bra012038
I
0.726
29785.m000932
Ricinus communis
29785.m000932
I
0.723
cassava30977.valid.m1
Manihot esculenta
cassava30977.valid.m1
I
0.723
POPTR_0009s02380
Populus trichocarpa
POPTR_0009s02380
I
0.721
VIT_06s0009g02480
Vitis vinifera
VIT_06s0009g02480
I
0.721
mgf025568m
Mimulus guttatus
mgf025568m
I
0.718
GLYMA13G04031
Glycine max
GLYMA13G04031
I
0.714
evm.TU.supercontig_34.210
Carica papaya
evm.TU.supercontig_34.210
I
0.708
Gorai.006G121900
Gossypium raimondii
Gorai.006G121900
I
0.707
SapurV1A.0008s0050
Salix purpurea
SapurV1A.0008s0050
I
0.705
29686.m000890
Ricinus communis
29686.m000890
I
0.702
cassava1461.valid.m1
Manihot esculenta
cassava1461.valid.m1
I
0.702
evm.TU.supercontig_33.151
Carica papaya
evm.TU.supercontig_33.151
I
0.702
Lus10008685.g
Linum usitatissimum
Lus10008685.g
I
0.702
Lus10026142.g
Linum usitatissimum
Lus10026142.g
I
0.702
TCM_041010
Theobroma cacao
TCM_041010
I
0.699
GLYMA06G47000
Glycine max
GLYMA06G47000
I
0.698
GSMUA_Achr1G17150_001
Musa acuminata
GSMUA_Achr1G17150_001
I
0.697
Ca_07119
Cicer arietinum
Ca_07119
I
0.697
Cucsa.364400
Cucumis sativus
Cucsa.364400
I
0.697
POPTR_0001s07330
Populus trichocarpa
POPTR_0001s07330
I
0.696
POPTR_0003s18900
Populus trichocarpa
POPTR_0003s18900
I
0.696
TCM_044611
Theobroma cacao
TCM_044611
I
0.696
Gorai.010G212500
Gossypium raimondii
Gorai.010G212500
I
0.696
SapurV1A.0369s0230
Salix purpurea
SapurV1A.0369s0230
I
0.696
SapurV1A.0537s0200
Salix purpurea
SapurV1A.0537s0200
I
0.696
Lus10026787.g
Linum usitatissimum
Lus10026787.g
I
0.694
Lus10036103.g
Linum usitatissimum
Lus10036103.g
I
0.694
AMTR_s00038p00150140
Amborella trichopoda
AMTR_s00038p00150140
I
0.693
PGSC0003DMG400005918
Solanum tuberosum
PGSC0003DMG400005918
I
0.693
Solyc06g073640.2
Solanum lycopersicum
Solyc06g073640.2
I
0.693
SapurV1A.1951s0020
Salix purpurea
SapurV1A.1951s0020
I
0.693
Gorai.009G301100
Gossypium raimondii
Gorai.009G301100
I
0.691
SELMODRAFT_128781
Selaginella moellendorffii
SELMODRAFT_128781
I
0.690
SELMODRAFT_81112
Selaginella moellendorffii
SELMODRAFT_81112
I
0.690
PGSC0003DMG400022689
Solanum tuberosum
PGSC0003DMG400022689
I
0.689
Solyc01g009070.2
Solanum lycopersicum
Solyc01g009070.2
I
0.689
Gorai.012G022000
Gossypium raimondii
Gorai.012G022000
I
0.687
GLYMA12G31950
Glycine max
GLYMA12G31950
I
0.686
GLYMA13G38521
Glycine max
GLYMA13G38521
I
0.686
VIT_13s0067g01630
Vitis vinifera
VIT_13s0067g01630
I
0.684
gw1.238.44.1
Physcomitrella patens
gw1.238.44.1
I
0.684
gw1.66.160.1
Physcomitrella patens
gw1.66.160.1
I
0.684
Aquca_014_00928
Aquilegia coerulea
Aquca_014_00928
I
0.684
Ciclev10000756m.g
Citrus clementina
Ciclev10000756m.g
I
0.684
orange1.1g011938m.g
Citrus sinensis
orange1.1g011938m.g
I
0.684
PDK_20s1831811g001
Phoenix dactylifera
PDK_20s1831811g001
I
0.684
cassava40302.m1
Manihot esculenta
cassava40302.m1
I
0.683
GLYMA04G15150
Glycine max
GLYMA04G15150
I
0.682
PGSC0003DMG400028949
Solanum tuberosum
PGSC0003DMG400028949
I
0.681
PRUPE_ppa003628mg
Prunus persica
PRUPE_ppa003628mg
I
0.681
Solyc07g052300.2
Solanum lycopersicum
Solyc07g052300.2
I
0.681
Pm016605
Prunus mume
Pm016605
I
0.681
myb.Ph3
Petunia x hybrida
Q02994_PETHY
D
0.681
cassava44767.m1
Manihot esculenta
cassava44767.m1
I
0.681
mgf002965m
Mimulus guttatus
mgf002965m
I
0.681
Cagra.2117s0052
Capsella grandiflora
Cagra.2117s0052
I
0.681
Carubv10000715m.g
Capsella rubella
Carubv10000715m.g
I
0.681
gene00431-v1.0-hybrid
Fragaria vesca
gene00431-v1.0-hybrid
I
0.681
MTR_2g088170
Medicago truncatula
MTR_2g088170
I
0.679
PGSC0003DMG400013897
Solanum tuberosum
PGSC0003DMG400013897
I
0.678
Bostr.13129s0364
Boechera stricta
Bostr.13129s0364
I
0.678
Eucgr.G03183
Eucalyptus grandis
Eucgr.G03183
I
0.678
Thhalv10013329m.g
Eutrema salsugineum
Thhalv10013329m.g
I
0.678
chr3.CM0005.370.nc
Lotus japonicus
chr3.CM0005.370.nc
I
0.678
MYB33
Arabidopsis lyrata
fgenesh2_kg.6__546__AT5G06100.3
I
0.677
PRUPE_ppa019943mg
Prunus persica
PRUPE_ppa019943mg
I
0.677
GLYMA13G25716
Glycine max
GLYMA13G25716
I
0.676
GLYMA15G35860
Glycine max
GLYMA15G35860
I
0.676
SELMODRAFT_117411
Selaginella moellendorffii
SELMODRAFT_117411
I
0.675
SELMODRAFT_84369
Selaginella moellendorffii
SELMODRAFT_84369
I
0.675
GLYMA20G11040
Glycine max
GLYMA20G11040
I
0.674
GRMZM2G139688
Zea mays
GRMZM2G139688
I
0.674
Q9FR42_TOBAC
Nicotiana tabacum
Q9FR42_TOBAC
D
0.673
Ca_25013
Cicer arietinum
Ca_25013
I
0.671
GAM1
Oryza indica
BGIOSGA004670
I
0.670
BRADI2G53010
Brachypodium distachyon
BRADI2G53010
I
0.670
F775_28392
Aegilops tauschii
F775_28392
I
0.670
GAM1_ORYSI
Oryza sativa
GAM1_ORYSI
D
0.670
MTR_1g021230
Medicago truncatula
MTR_1g021230
I
0.670
MTR_3g052430
Medicago truncatula
MTR_3g052430
I
0.670
MTR_3g052450
Medicago truncatula
MTR_3g052450
I
0.670
OB01G43550
Oryza brachyantha
OB01G43550
I
0.670
OBART01G34660
Oryza barthii
OBART01G34660
I
0.670
OGLUM01G20920
Oryza glumaepatula
OGLUM01G20920
I
0.670
OLONG_020610
Oryza longistaminata
OLONG_020610
I
0.670
OMERI01G31990
Oryza meridionalis
OMERI01G31990
I
0.670
GAMYB
Oryza sativa
OS01G0812000
I
0.670
Gam1
Hordeum vulgare
Q96464_HORVU
D
0.670
Si000907m.g
Setaria italica
Si000907m.g
I
0.670
TRAES3BF027700010CFD_g
Triticum aestivum
TRAES3BF027700010CFD_g
I
0.670
TRIUR3_27104
Triticum urartu
TRIUR3_27104
I
0.670
Pavir.Ea03206
Panicum virgatum
Pavir.Ea03206
I
0.670
GSMUA_AchrUn_randomG15100_001
Musa acuminata
GSMUA_AchrUn_randomG15100_001
I
0.669
PRUPE_ppa022465mg
Prunus persica
PRUPE_ppa022465mg
I
0.668
Sb10g027280
Sorghum bicolor
Sb10g027280
I
0.668
Si006555m.g
Setaria italica
Si006555m.g
I
0.668
Cla005406
Citrullus lanatus
Cla005406
I
0.668
Cucsa.060080
Cucumis sativus
Cucsa.060080
I
0.668
gene03321-v1.0-hybrid
Fragaria vesca
gene03321-v1.0-hybrid
I
0.668
Pavir.Db00593
Panicum virgatum
Pavir.Db00593
I
0.668
Cla007782
Citrullus lanatus
Cla007782
I
0.667
Cucsa.148580
Cucumis sativus
Cucsa.148580
I
0.667
SapurV1A.1897s0070
Salix purpurea
SapurV1A.1897s0070
I
0.667
SapurV1A.2567s0040
Salix purpurea
SapurV1A.2567s0040
I
0.667
Ca_20081
Cicer arietinum
Ca_20081
I
0.666
LjT02G13.10.nc
Lotus japonicus
LjT02G13.10.nc
I
0.666
Aquca_005_00025
Aquilegia coerulea
Aquca_005_00025
I
0.665
MTR_3g011610
Medicago truncatula
MTR_3g011610
I
0.664
29823.m000215
Ricinus communis
29823.m000215
I
0.664
cassava11031.m1
Manihot esculenta
cassava11031.m1
I
0.664
LjSGA_010688.1
Lotus japonicus
LjSGA_010688.1
I
0.664
GLYMA18G10921
Glycine max
GLYMA18G10921
I
0.663
Cla013880
Citrullus lanatus
Cla013880
I
0.663
MDP0000175835
Malus domestica
MDP0000175835
I
0.663
AMTR_s00037p00177500
Amborella trichopoda
AMTR_s00037p00177500
I
0.662
MYB33
Arabidopsis thaliana
AT5G06100
D
0.661
MTR_8g042410
Medicago truncatula
MTR_8g042410
I
0.661