Carubv10027619m.g (Capsella rubella)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Carubv10027619m.g T286465_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB80
M07142_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHNN
NNDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MS188_col_a 		0.909 1.000
MYB80
M07143_2.00 		Arabidopsis thaliana
YYYACCTAMYTWNNN
NNNWARKTAGGTRRR		 Dap-seq
OMalley et al.(2016)
MS188_colamp_a 		0.909 1.000
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10027619m Myb 14 61
Carubv10027619m Myb 67 112

Links

Other Myb/SANT family TFs
Other Capsella rubella TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0008_2049 Arabidopsis lyrata Al_scaffold_0008_2049 I 0.909
MYB80 Arabidopsis thaliana AT5G56110 D 0.909
Bra002847 Brassica rapa Bra002847 I 0.909
Cagra.3745s0008 Capsella grandiflora Cagra.3745s0008 I 0.909
Thhalv10015622m.g Eutrema salsugineum Thhalv10015622m.g I 0.909
AtMYB103 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001268 I 0.905
Bostr.26833s0652 Boechera stricta Bostr.26833s0652 I 0.900
Bo9g123440 Brassica oleracea Bo9g123440 I 0.898
Bra035604 Brassica rapa Bra035604 I 0.892
Bo2g036530 Brassica oleracea Bo2g036530 I 0.872
evm.TU.supercontig_12.83 Carica papaya evm.TU.supercontig_12.83 I 0.857
TCM_030529 Theobroma cacao TCM_030529 I 0.849
POPTR_0011s17060 Populus trichocarpa POPTR_0011s17060 I 0.841
Eucgr.F03656 Eucalyptus grandis Eucgr.F03656 I 0.836
Aquca_005_00315 Aquilegia coerulea Aquca_005_00315 I 0.834
GLYMA18G07960 Glycine max GLYMA18G07960 I 0.832
PRUPE_ppa021719mg Prunus persica PRUPE_ppa021719mg I 0.832
AtMYB103 Vitis vinifera VIT_19s0015g01280 I 0.832
Ca_17657 Cicer arietinum Ca_17657 I 0.832
cassava33918.m1 Manihot esculenta cassava33918.m1 I 0.832
Cucsa.041880 Cucumis sativus Cucsa.041880 I 0.832
Gorai.009G454000 Gossypium raimondii Gorai.009G454000 I 0.832
SapurV1A.0338s0180 Salix purpurea SapurV1A.0338s0180 I 0.832
PGSC0003DMG400008687 Solanum tuberosum PGSC0003DMG400008687 I 0.831
Solyc10g005760.1 Solanum lycopersicum Solyc10g005760.1 I 0.831
SapurV1A.0395s0050 Salix purpurea SapurV1A.0395s0050 I 0.830
gene01457-v1.0-hybrid Fragaria vesca gene01457-v1.0-hybrid I 0.825
LPERR04G12420 Leersia perrieri LPERR04G12420 I 0.823
Cla004524 Citrullus lanatus Cla004524 I 0.821
Ciclev10008921m.g Citrus clementina Ciclev10008921m.g I 0.818
MTR_3g461490 Medicago truncatula MTR_3g461490 I 0.817
BGIOSGA014912 Oryza indica BGIOSGA014912 I 0.814
F775_22620 Aegilops tauschii F775_22620 I 0.814
GRMZM2G173633 Zea mays GRMZM2G173633 I 0.814
OB04G23000 Oryza brachyantha OB04G23000 I 0.814
OGLUM04G15520 Oryza glumaepatula OGLUM04G15520 I 0.814
OMERI04G13500 Oryza meridionalis OMERI04G13500 I 0.814
ONIVA04G13800 Oryza nivara ONIVA04G13800 I 0.814
OPUNC04G13560 Oryza punctata OPUNC04G13560 I 0.814
ORGLA04G0126700 Oryza glaberrima ORGLA04G0126700 I 0.814
ORUFI04G17000 Oryza rufipogon ORUFI04G17000 I 0.814
Sb06g019650 Sorghum bicolor Sb06g019650 I 0.814
Si012130m.g Setaria italica Si012130m.g I 0.814
Traes_2BL_361925B62 Triticum aestivum Traes_2BL_361925B62 I 0.814
TRIUR3_35325 Triticum urartu TRIUR3_35325 I 0.814
Pavir.Ga01401 Panicum virgatum Pavir.Ga01401 I 0.814
POPTR_0001s47430 Populus trichocarpa POPTR_0001s47430 I 0.812
BGIOSGA030830 Oryza indica BGIOSGA030830 I 0.794
BRADI5G13041 Brachypodium distachyon BRADI5G13041 I 0.792
Traes_2DL_A03AB7608 Triticum aestivum Traes_2DL_A03AB7608 I 0.769
Pavir.J28142 Panicum virgatum Pavir.J28142 I 0.698
Pavir.J07059 Panicum virgatum Pavir.J07059 I 0.695
MTR_4g097570 Medicago truncatula MTR_4g097570 I 0.692
GLYMA19G36830 Glycine max GLYMA19G36830 I 0.688
PGSC0003DMG400004948 Solanum tuberosum PGSC0003DMG400004948 I 0.688
Solyc04g077260.2 Solanum lycopersicum Solyc04g077260.2 I 0.688
PRUPE_ppa024417mg Prunus persica PRUPE_ppa024417mg I 0.684
MDP0000124992 Malus domestica MDP0000124992 I 0.684
MDP0000262514 Malus domestica MDP0000262514 I 0.684
MDP0000786507 Malus domestica MDP0000786507 I 0.684
GSMUA_Achr5G01930_001 Musa acuminata GSMUA_Achr5G01930_001 I 0.683
GSMUA_Achr6G31740_001 Musa acuminata GSMUA_Achr6G31740_001 I 0.683
GLYMA01G40411 Glycine max GLYMA01G40411 I 0.677
Gorai.009G006700 Gossypium raimondii Gorai.009G006700 I 0.677
OB03G42660 Oryza brachyantha OB03G42660 I 0.676
BGIOSGA009746 Oryza indica BGIOSGA009746 I 0.673
GLYMA04G05170 Glycine max GLYMA04G05170 I 0.673
GLYMA06G05260 Glycine max GLYMA06G05260 I 0.673
GLYMA11G04880 Glycine max GLYMA11G04880 I 0.673
LPERR03G29970 Leersia perrieri LPERR03G29970 I 0.673
MTR_1g017140 Medicago truncatula MTR_1g017140 I 0.673
MTR_5g014990 Medicago truncatula MTR_5g014990 I 0.673
OBART03G35660 Oryza barthii OBART03G35660 I 0.673
OGLUM03G35410 Oryza glumaepatula OGLUM03G35410 I 0.673
OLONG_025560 Oryza longistaminata OLONG_025560 I 0.673
OMERI03G32880 Oryza meridionalis OMERI03G32880 I 0.673
ONIVA03G37150 Oryza nivara ONIVA03G37150 I 0.673
ORGLA03G0327000 Oryza glaberrima ORGLA03G0327000 I 0.673
ORUFI03G37090 Oryza rufipogon ORUFI03G37090 I 0.673
OS03G0771100 Oryza sativa OS03G0771100 I 0.673
POPTR_0002s11440 Populus trichocarpa POPTR_0002s11440 I 0.673
POPTR_0018s10390 Populus trichocarpa POPTR_0018s10390 I 0.673
Sb01g006800 Sorghum bicolor Sb01g006800 I 0.673
Si036681m.g Setaria italica Si036681m.g I 0.673
TCM_034634 Theobroma cacao TCM_034634 I 0.673
MYB36 Vitis vinifera VIT_11s0052g01490 I 0.673
VIT_18s0001g08470 Vitis vinifera VIT_18s0001g08470 I 0.673
Ca_02249 Cicer arietinum Ca_02249 I 0.673
Ca_09203 Cicer arietinum Ca_09203 I 0.673
Cla014272 Citrullus lanatus Cla014272 I 0.673
Cla021213 Citrullus lanatus Cla021213 I 0.673
cassava25562.m1 Manihot esculenta cassava25562.m1 I 0.673
cassava46793.m1 Manihot esculenta cassava46793.m1 I 0.673
Cucsa.103470 Cucumis sativus Cucsa.103470 I 0.673
Cucsa.353120 Cucumis sativus Cucsa.353120 I 0.673
Ciclev10027178m.g Citrus clementina Ciclev10027178m.g I 0.673
Gorai.009G222900 Gossypium raimondii Gorai.009G222900 I 0.673
orange1.1g036344m.g Citrus sinensis orange1.1g036344m.g I 0.673
Pavir.Ia00427 Panicum virgatum Pavir.Ia00427 I 0.673
SapurV1A.0004s0360 Salix purpurea SapurV1A.0004s0360 I 0.673
SapurV1A.0271s0250 Salix purpurea SapurV1A.0271s0250 I 0.673
GSMUA_Achr10G08350_001 Musa acuminata GSMUA_Achr10G08350_001 I 0.671
PGSC0003DMG400021401 Solanum tuberosum PGSC0003DMG400021401 I 0.667
Solyc02g091980.1 Solanum lycopersicum Solyc02g091980.1 I 0.667
Lus10011606.g Linum usitatissimum Lus10011606.g I 0.665
Lus10013830.g Linum usitatissimum Lus10013830.g I 0.665
Lus10026543.g Linum usitatissimum Lus10026543.g I 0.665
Thhalv10010576m.g Eutrema salsugineum Thhalv10010576m.g I 0.665
evm.TU.supercontig_160.24 Carica papaya evm.TU.supercontig_160.24 I 0.664
SapurV1A.0818s0020 Salix purpurea SapurV1A.0818s0020 I 0.664
Aquca_001_00247 Aquilegia coerulea Aquca_001_00247 I 0.662
Gorai.006G162800 Gossypium raimondii Gorai.006G162800 I 0.661